Trichotorquatus gen. nov. - a new genus of soil cyanobacteria discovered from American drylands1

. 2021 Jun ; 57 (3) : 886-902. [epub] 20210323

Jazyk angličtina Země Spojené státy americké Médium print-electronic

Typ dokumentu časopisecké články, práce podpořená grantem, Research Support, U.S. Gov't, Non-P.H.S.

Perzistentní odkaz   https://www.medvik.cz/link/pmid33583028

Cyanobacteria are crucial ecosystem components in dryland soils. Advances in describing α-level taxonomy are needed to understand what drives their abundance and distribution. We describe Trichotorquatus gen. nov. (Oculatellaceae, Synechococcales, Cyanobacteria) based on four new species isolated from dryland soils including the coastal sage scrub near San Diego, California (USA), the Mojave and Colorado Deserts with sites at Joshua Tree National Park and Mojave National Preserve, California (USA), and the Atacama Desert (Chile). The genus is morphologically characterized by having thin trichomes (<4.5 μm wide), cells both shorter and longer than wide, rarely occurring single and double false branching, necridia appearing singly or in rows, and sheaths with a distinctive collar-like fraying and widening mid-filament, the feature for which the genus is named. The genus is morphologically nearly identical with Leptolyngbya sensu stricto but is phylogenetically quite distant from that genus. It is consequently a cryptic genus that will likely be differentiated in future studies based on 16S rRNA sequence data. The type species, T. maritimus sp. nov. is morphologically distinct from the other three species, T. coquimbo sp. nov., T. andrei sp. nov. and T. ladouxae sp. nov. However, these latter three species are morphologically very close and are considered by the authors to be cryptic species. All species are separated phylogenetically based on sequence of the 16S-23S ITS region. Three distinct ribosomal operons were recovered from the genus, lending difficulty to recognizing further diversity in this morphologically cryptic genus.

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Alwathnani, H. & Johansen, J. R. 2011. Cyanobacteria in soils from a Mojave Desert ecosystem. Monogr. West. N. Am. Nat. 5:71-89.

Bagchi, S. N., Dubey, N. & Singh, P. 2017. Phylogenetically distant clade of Nostoc-like taxa with the description of Aliinostoc gen. nov. and Aliinostoc morphoplasticum sp. nov. Int. J. Syst. Evol. Micr. 67:3329-38.

Becerra-Absalón, I., Johansen, J. R., Muñoz-Martín, M. A. & Montejano, G. 2018. Chroakolemma gen. nov. (Leptolyngbyaceae, Cyanobacteria) from soil biocrusts in the semi-desert Central Region of Mexico. Phytotaxa 367:201-18.

Becerra-Absalón, I., Johansen, J. R., Osorio-Santos, K. & Montejano, G. 2020. Two new Oculatella (Oculatellaceae, Cyanobacteria) species in soil crusts from tropical semi-arid uplands of México. Fottea 20:160-70.

Becerra-Absalón, I., Muñoz-Martín, M. A., Montejano, G. & Mateo, P. 2019. Differences in the cyanobacterial community composition of biocrusts from the drylands of Central Mexico. Are there endemic species? Front. Microbiol. 10:937.

Belnap, J., Büdel, B. & Lange, O. L. 2003. Biological soil crusts: Characteristics and distribution. In Belnap, J. & Lange, O. L. [Eds.] Ecological Studies 150. Springer-Verlag, Berlin Heidelberg, pp. 3-30.

Bohunická, M., Pietrasiak, N., Johansen, J. R., Berrendero-Gomez, E., Hauer, T., Gaysina, L. & Lukešová, A. 2015. Roholtiella, gen. nov. (Nostocales, Cyanobacteria) - a tapering and branching member of the Nostocaceae (Cyanobacteria). Phytotaxa 197:84-103.

Boyer, S. L., Flechtner, V. R. & Johansen, J. R. 2001. Is the 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? A case study in cyanobacteria. Mol. Biol. Evol. 18:1057-69.

Boyer, S. L., Johansen, J. R., Flechtner, V. R. & Howard, G. L. 2002. Phylogeny and genetic variance in terrestrial Microcoleus (Cyanophyceae) species based on sequence analysis of the 16S rRNA gene and associated 16S-23S ITS region. J. Phycol. 38:1222-35.

Büdel, B., Dulić, T., Darienko, T., Rybalka, N. & Friedl, T. 2016. Cyanobacteria and algae of biological soil crusts. In Weber, B., Büdel, B. & Belnap, J. [Eds.] Ecological Studies. Springer International Publishing, Champaign, pp. 55-80.

Burke, D. J., Kretzer, A. M., Rygiewicz, P. T. & Topa, A. M. 2006. Soil bacterial diversity in a loblolly pine plantation: influence of ecotomycorrhizas and fertilization. FEMS Microbiol. Ecol. 57:409-19.

Cai, F., Li, X., Geng, R., Peng, X. & Li, R. 2019a. Phylogenetically distant clade of Nostoc-like taxa with the description of Minunostoc gen. nov. and Minunostoc cylindricum sp. nov. Fottea 19:13-24.

Cai, F., Li, X., Yang, Y., Jia, N., Huo, D. & Li, R. 2019b. Compactonostoc shennongjiaensis gen. & sp. nov. (Nostocales, Cyanobacteria) from a wet rocky wall in China. Phycologia 58:200-10.

Cai, F. & Li, R. 2019. Validation of Compactonostoc shennongjiaense gen. et sp. nov. (Nostocaceae, Cyanobacteria). Notulae Algarum 121:1.

Cai, F., Peng, X. & Li, R. 2020. Violetonostoc minutum gen et sp. nov. (Nostocales, Cyanobacteria) from a rocky substrate in China. Algae Int. J. Algal Res. 35:1-15.

Carmichael, W. W. 1986. Isolation, culture, and toxicity testing of toxic freshwater cyanobacteria (blue-green algae). In Shilov, V. [Ed.] Fundamental research in homogenous catalysis. Vol. 3. Gordon and Breach, New York, pp. 1249-62.

Casamatta, D. A., Johansen, J. R., Vis, M. L. & Broadwater, S. T. 2005. Molecular and morphological characterization of ten polar and near-polar strains within the Oscillatoriales (Cyanobacteria). J. Phycol. 41:421-38.

Darriba, D., Taboada, G. L., Doallo, R. & Posada, D. 2012. jModelTest2: More models, new heuristics and parallel computing. Nat. Methods 9:772.

Dodds, W. K., Gudder, D. A. & Mollenhauer, D. 1995. The ecology of Nostoc. J. Phycol. 31:2-18.

Dojani, S., Kauff, F., Weber, B. & Büdel, B. 2013. Genotypic and phenotypic diversity of Cyanobacteria in biological soil crusts of the succulent Karoo and Nama Karoo of Southern Africa. Microb. Ecol. 67:286-301.

Elbert, W., Weber, B., Burrows, S., Steinkamp, J., Büdel, B., Andreae, M. O. & Pöschl, U. 2012. Contribution of cryptogamic covers to the global cycles of carbon and nitrogen. Nature Geosci. 5:459-62.

Evans, R. D. & Johansen, J. R. 1999. Microbiotic crusts and ecosystem processes. Critical Rev. Plant Sci. 18:183-225.

Flechtner, V. R., Boyer, S. L., Johansen, J. R. & DeNoble, M. L. 2002. Spirirestis rafaelensis gen. et sp. nov. (Cyanophyceae), a new cyanobacterial genus from desert soils. Nova Hedwigia 74:1-24.

Flechtner, V. R., Johansen, J. R. & Belnap, J. 2008. The biological soil crusts of the San Nicolas Island: enigmatic algae from a geographically isolated system. West. N. Am. Nat. 68:405-36.

Garcia-Pichel, F., López-Cortés, A. & Nübel, U. 2001. Phylogenetic and morphological diversity of cyanobacteria in soil desert crusts from the Colorado Plateau. Appl. Environ. Microbiol. 67:1902-10.

Genuário, D. B., Vieira Vaz, M. G. M., Hentschke, G. S., Sant'Anna, C. L. & Fiore, M. F. 2015. Halotia gen. nov., a phylogenetically and physiologically coherent cyanobacterial genus isolated from marine coastal environments. Int. J. Syst. Evol. Microbiol. 65:663-675.

Giraldo-Silva, A., Nelson, C., Barger, N. N. & Garcia-Pichel, F. 2019. Nursing biocrusts: isolation, cultivation, and fitness test of indigenous cyanobacteria. Restor. Ecol. 27:793-803.

Hagemann, M., Henneberg, M., Felde, V. J., Drahorad, S. L., Berkowicz, S. M., Felix-Henningsen, P. & Kaplan, A. 2015. Cyanobacterial diversity in biological soil crusts along a precipitation gradient, Northwest Negev Desert, Israel. Microb. Ecol. 70:219-30.

Hentschke, G. S., Johansen, J. R., Pietrasiak, N., Rigonato, J., Fiore, M. F. & Sant'Anna, C. L. 2017. Komarekiella atlantica gen. et sp. nov. (Nostocaceae, Cyanobacteria): a new subaerial taxon from the Atlantic Rainforest and Kauai, Hawaii. Fottea, Olomouc 17:178-90.

Johansen, J. R. 1993. Cryptogamic crusts of semiarid and arid lands of North America: Minireview. J. Phycol. 29:140-7.

Johansen, J. R. & Shubert, L. E. 2001. Algae in soils. Nova Hedwigia, Beiheft 123:297-306.

Johansen, J. R., Olsen, C. E., Lowe, R. L., Fučiková, K. & Casamatta, D. A. 2008. Leptolyngbya species from selected seep walls in the Great Smoky Mountains National Park. Algol. Stud. 126:21-36.

Johansen, J. R., Kovacik, L., Casamatta, D. A., Fučiková, K. & Kaštovský, J. 2011. Utility of 16S-23S ITS sequence and secondary structure for recognition of intrageneric and intergeneric limits within cyanobacterial taxa: Leptolyngbya corticola sp. nov. (Pseudanabaenaceae, Cyanobacteria). Nova Hedwigia 92:283-302.

Komárek, J. & Anagnostidis, K. 2005. Cyanoprokaryota - 2nd Part: Oscillatoriales. Elsevier/Spektrum, Heidelberg, 759 pp.

Komárek, J., Kaštovsky, J., Mareš, J. & Johansen, J. R. 2014. Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) according to the polyphasic approach. Preslia 86:295-335.

Komárek, J., Johansen, J. R., Šmarda, J. & Strunecký, O. 2020. Phylogeny and taxonomy of Synechococcus-like cyanobacteria. Fottea 20:171-91.

Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., Gibson, T. J. & Higgins, D. G. 2007. ClustalW and ClustalX version 2. Bioinformatics 23:2947-8.

Mai, T., Johansen, J. R., Pietrasiak, N., Bohunická, M. & Martin, M. P. 2018. Revision of the Synechococcales (Cyanobacteria) through recognition of four families including Oculatellaceae fam. nov. and Trichocoleaceae fam. nov. and six new genera containing 14 species. Phytotaxa 325:1-59.

Maier, S., Tamm, A., Wu, D., Caesar, J., Grube, M. & Weber, B. 2018. Photoautotrophic organisms control microbial abundance, diversity, and physiology in different types of biological soil crusts. ISME J. 12:1032-46.

Mareš, J., Johansen, J. R., Hauer, T., Zima, J. Jr, Ventura, S., Cuzman, O., Tiribilli, B. & Kaštovský, J. 2019. Taxonomic resolution of the genus Cyanothece (Chroococcales, Cyanobacteria), with a treatment on Gloeothece and three new genera, Crocosphaera, Rippkaea, and Zehria. J. Phycol. 55:578-610.

Mesfin, M., Johansen, J. R., Pietrasiak, N. & Balderelli, L. M. 2020. Nostoc oromo sp. nov. (Nostocales, Cyanophyceae) from Ethiopia: a new species based on morphological and molecular evidence. Phytotaxa 433:81-93.

Miller, M., Schwartz, T., Pickett, B., He, S., Klem, E., Scheuermann, R. H., Passarotti, M., Kaufman, S. & O'Leary, M. A. 2015. A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway. Evol. Bioinform. 11:43-8.

Mühlsteinová, R., Johansen, J. R., Pietrasiak, N., Martin, M. P., Osorio-Santos, K. & Warren, S. D. 2014a. Polyphasic characterization of Trichocoleus desertorum sp. nov. (Pseudanabaenales, Cyanobacteria) from desert soils and phylogenetic placement of the genus Trichocoleus. Phytotaxa 193:241-61.

Mühlsteinová, R., Johansen, J. R., Pietrasiak, N. & Martin, M. P. 2014b. Polyphasic characterization of Kastovskya adunca gen. nov. et comb. nov. (Oscillatoriales, Cyanobacteria) from desert soils of the Atacama Desert, Chile. Phytotaxa 163:216-28.

Muñoz-Martín, M. Á., Becerra-Absalón, I., Perona, E., Fernández-Valbuena, L., Garcia-Pichel, F. & Mateo, P. 2019. Cyanobacterial biocrust diversity in Mediterranean ecosystems along a latitudinal and climatic gradient. New Phytol. 221:123-41.

Nübel, U., Garcia-Pichel, F. & Muyzer, G. 1997. PCR primers to amplify 16S rRNA genes from cyanobacteria. Appl. Environ. Microbiol. 63:3327-32.

Osorio-Santos, K., Pietrasiak, N., Bohunická, M., Miscoe, L. H., Kováčik, L., Martin, M. P. & Johansen, J. R. 2014. Seven new species of Oculatella (Pseudanabaenales, Cyanobacteria). Eur. J. Phycol. 49:450-70.

Patzelt, D. J., Hodač, L., Friedl, T., Pietrasiak, N. & Johansen, J. R. 2014. Biodiversity of soil cyanobacteria in the hyper-arid Atacama Desert, Chile, assessed by culture dependent and independent approaches. J. Phycol. 50:698-710.

Perkerson, R., Johansen, J. R., Kovacik, L., Brand, J. & Casamatta, D. A. 2011. A unique Pseudanbaenalean (Cyanobacteria) genus Nodosilinea gen. nov. based on morphological and molecular data. J. Phycol. 47:1397-412.

Pietrasiak, N., Mühlsteinová, R., Siegesmund, M. & Johansen, J. R. 2014. Phylogenetic placement of Symplocastrum (Phormidiaceae, Cyanobacteria) with descriptions of two new species: S. flechtnerae and S. torsivum. Phycologia 53:529-41.

Pietrasiak, N., Osorio-Santos, K., Shalygin, S., Martin, M. P. & Johansen, J. R. 2019. When is a lineage a species? A case study in Myxacorys gen. nov. (Synechococcales: Cyanobacteria) with the description of two new species from the Americas. J. Phycol. 55:976-96.

Rambaut, A. 2018. FigTree v1.4.4, A Graphical Viewer of Phylogenetic Trees. Available from http://tree.bio.ed.ac.uk/software/figtree/.

Řeháková, K., Johansen, J. R., Casamatta, D. A., Xuesong, L. & Vincent, J. 2007. Morphological and molecular characterization of selected desert soil cyanobacteria: three species new to science including Mojavia pulchra gen. et sp. nov. Phycologia 46:481-502.

Rivera-Aguilar, V., Montejano, G., Rodríguez-Zaragoza, S. & Durán-Díaz, A. 2006. Distribution and composition of cyanobacteria, mosses and lichens of the biological soil crusts of the Tehuacán Valley, Puebla, México. J. Arid Environ. 67:208-25.

Saraf, A. G., Dawda, H. G. & Singh, P. 2018. Desikacharya gen. nov., a phylogenetically distinct genus of Cyanobacteria along with the description of two new species, Desikacharya nostocoides sp. nov. and Desikacharya soli sp. nov., and reclassification of Nostoc thermotolerans to Desikacharya thermotolerans comb. nov. Int. J. Syst. Evol. Microbiol. 69:307-15.

Saraf, A. G., Dawda, H. G. & Singh, P. 2019. Validation of the genus Desikacharya gen. nov. (Nostocaceae, Cyanobacteria) and three included species. Notulae Algarum 107:1-3.

Shalygin, S., Shalygina, R., Redkina, V. V., Gargas, C. B. & Johansen, J. R. 2020. Description of Stenomitos kolaenensis and S. hiloensis sp. nov. (Leptolyngbyaceae, Cyanobacteria) with an emendation of the genus. Phytotaxa 440:108-28.

Swofford, D. L. 1998. PAUP*: Phylogenetic analysis using parsimony (and other methods). Sinauer Associates, Sunderland, Massachusetts.

Taton, A., Grubisic, S., Ertz, D., Hodgson, D. A., Piccardi, R., Biondi, N., Tredici, M. R., Mainini, M., Losi, D., Marinelli, F. & Wilmotte, A. 2006. Polyphasic study of Antarctic cyanobacterial strains. J. Phycol. 42:1257-70.

Thiers, B. 2020. Index Herbariorum: A Global Directory of Public Herbaria and Associated Staff. New York Botanical Garden’s Virtual Herbarium. http://sweetgum.nybg.org/science/ih [accessed 11 June 2019].

Turland, N. J., Wiersema, J. H., Barrie, F. R., Greuter, W., Hawks-worth, D. L., Herendeen, P. S. & Knapp, S., et al. [Eds.] 2018. International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress Shenzhen, China, July 2017. Regnum Vegetabile 159. Koeltz Botanical Books, Glashütten.

Turner, S. 1997. Molecular systematics of the oxygenic photosynthetic bacteria. Pl. Syst. Evol. 11:13-52.

Vaz, M. G. M. V., Genuário, D. B., Andreote, A. P. D., Malone, C. F. S., Sant'Anna, C. L., Barbiero, L. & Fiore, M. F. 2015. Pantanalinema gen. nov. and Alkalinema gen. nov.: novel pseudanabaenacean genera (Cyanobacteria) isolated from saline-alkaline lakes. Int. J. Syst. Evol. Microbiol. 65:298-308.

Williams, L., Loewen-Schneider, K., Maier, S. & Büdel, B. 2016. Cyanobacterial diversity of western European biological soil crusts along a latitudinal gradient. FEMS Microbiol. Ecol. 92:fiw157.

Wilmotte, A., Auwera, G. V. D. & Wachter, R. D. 1993. Structure of the 16S rRNA of the thermophilic cyanobacterium Chlorogloeopsis HTF (‘Mastigocladus laminosus HTF’) strain PCC7518, and phylogenetic analysis. FEBS 317:96-100.

Yarza, P., Yilmaz, P., Pruesse, E., Glöckner, F. O., Ludwig, W., Schleifer, K., Whitman, W. B., Euzéby, J., Amann, R. & Rosselló-Móra, R. 2014. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nature Rev. Microbiol. 12:635-45.

Yeager, C. M., Kuske, C. R., Carney, T. D., Johnson, S. L., Ticknor, L. O. & Belnap, J. 2012. Response of biological soil crust diazotrophs to season, altered summer precipitation, and year-round increased temperature in an arid grassland of the Colorado Plateau, USA. Front. Microbiol. 3:358.

Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nuc. Acids Res. 31:3406-15.

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