SkullBreak / SkullFix - Dataset for automatic cranial implant design and a benchmark for volumetric shape learning tasks
Status PubMed-not-MEDLINE Jazyk angličtina Země Nizozemsko Médium electronic-ecollection
Typ dokumentu časopisecké články
Grantová podpora
KLI 678
Austrian Science Fund FWF - Austria
PubMed
33997188
PubMed Central
PMC8100897
DOI
10.1016/j.dib.2021.106902
PII: S2352-3409(21)00186-4
Knihovny.cz E-zdroje
- Klíčová slova
- autoimplant, cranial implant design, cranioplasty, deep learning, skull, volumetric shape learning,
- Publikační typ
- časopisecké články MeSH
The article introduces two complementary datasets intended for the development of data-driven solutions for cranial implant design, which remains to be a time-consuming and laborious task in current clinical routine of cranioplasty. The two datasets, referred to as the SkullBreak and SkullFix in this article, are both adapted from a public head CT collection CQ500 (http://headctstudy.qure.ai/dataset) with CC BY-NC-SA 4.0 license. The SkullBreak contains 114 and 20 complete skulls, each accompanied by five defective skulls and the corresponding cranial implants, for training and evaluation respectively. The SkullFix contains 100 triplets (complete skull, defective skull and the implant) for training and 110 triplets for evaluation. The SkullFix dataset was first used in the MICCAI 2020 AutoImplant Challenge (https://autoimplant.grand-challenge.org/) and the ground truth, i.e., the complete skulls and the implants in the evaluation set are held private by the organizers. The two datasets are not overlapping and differ regarding data selection and synthetic defect creation and each serves as a complement to the other. Besides cranial implant design, the datasets can be used for the evaluation of volumetric shape learning algorithms, such as volumetric shape completion. This article gives a description of the two datasets in detail.
Brno University of Technology Brno Czech Republic
Computer Algorithms for Medicine Laboratory Graz Styria Austria
Graz University of Technology Graz Styria Austria
Medical University of Graz Graz Styria Austria
qure ai Level 6 Oberoi Commerz 2 Goregaon East Mumbai 400063 India
Zobrazit více v PubMed
Li J., Pepe A., Gsaxner C., von Campe G., Egger J. Multimodal Learning for Clinical Decision Support and Clinical Image-Based Procedures. Springer; 2020. A baseline approach for autoimplant: the miccai 2020 cranial implant design challenge; pp. 75–84.
Kodym O., Španěl M., Herout A. Skull shape reconstruction using cascaded convolutional networks. Comput. Biol. Med. 2020;123:103886. doi: 10.1016/j.compbiomed.2020.103886. PubMed DOI
Kodym O., S̃panel M., Herout A. Segmentation of defective skulls from ct data for tissue modelling. arXiv preprint arXiv: 1911.08805. 2019
Li J., Pepe A., Gsaxner C., Egger J. An online platform for automatic skull defect restoration and cranial implant design. Proc. SPIE 11598, Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling, 115981Q. 2021