Small and overlooked: Phylogeny of the genus Trigonodactylus (Squamata: Gekkonidae), with the first record of Trigonodactylus arabicus from Jordan
Status PubMed-not-MEDLINE Jazyk angličtina Země Saúdská Arábie Médium print-electronic
Typ dokumentu časopisecké články
PubMed
34121892
PubMed Central
PMC8176046
DOI
10.1016/j.sjbs.2021.03.019
PII: S1319-562X(21)00192-3
Knihovny.cz E-zdroje
- Klíčová slova
- Middle East, Mitochondrial DNA, Palearctic naked-toed geckos, Range extension, Stenodactylus,
- Publikační typ
- časopisecké články MeSH
Geckos of the genus Trigonodactylus are widely distributed in the sand deserts of the Arabian Peninsula. Three species of this genus are currently recognized, with a fourth one, Stenodactylus pulcher, which placement within Trigonodactylus has been tentatively suggested, but not yet confirmed. We present a phylogenetic analysis of the genus Trigonodactylus with new specimens collected in central Saudi Arabia and southern Jordan. New genetic data has been generated from three mitochondrial markers to investigate the phylogenetic relationships of all species of the genus and to assess the putative generic assignment of S. pulcher. Our results confirm that S. pulcher indeed belongs within Trigonodactylus, branching as a sister lineage to all other species of the genus. The new samples cluster within Trigonodactylus arabicus, thus confirming the genetic homogeneity of the species across its large and seemingly inhospitable range. The new specimen collected in southern Jordan represents the first record for the country and a considerable range extension to the northwest from all previously reported localities. Our findings and discovery of a new species for Jordan highlight the need of more field surveys to be carried out in the underexplored parts of Jordan and northern Saudi Arabia, as these places still hold a potential for new discoveries and are crucial for understating the biogeography of the Arabian herpetofauna.
Biology Department Science College Taif University P O Box 11099 Taif 21944 Saudi Arabia
Department of Biology Jordan University of Science and Technology Irbid Jordan
Department of Biology The University of Jordan Amman Jordan
Department of Zoology Faculty of Science Charles University Viničná 7 12844 Prague Czech Republic
Department of Zoology National Museum Cirkusová 1740 19300 Prague Czech Republic
Institute of Evolutionary Biology Passeig Marítim de la Barceloneta 37 49 Barcelona Spain
Otovická 268 403 39 Chlumec Czech Republic
Saudi Wildlife Authority Prince Saud Al Faisal Research Center Taif Saudi Arabia
Zoological and Botanical Garden in Pilsen Pod Vinicemi 9 30116 Pilsen Czech Republic
Zobrazit více v PubMed
Al Quran S. A herpetofaunal survey of Southern Jordan. Herpetol Bull. 2010;112:7–13.
Arnold E.N. Reptiles of Saudi Arabia: a review of the lizard genus Stenodactylus (Reptilia: Gekkonidae) Fauna Saudi Arabia. 1980;2:368–404.
Arnold E.N. A key and annotated check list to the Lizards and Amphisbaenians of Arabia. Fauna Saudi Arabia. 1986;8:385–435.
Bauer A.M., Russell A.P. Pedal specialisations in dune-dwelling geckos. J. Arid Environ. 1991;20(1):43–62. doi: 10.1016/S0140-1963(18)30774-2. DOI
Bouckaert R., Heled J., Kühnert D., Vaughan T., Wu Ch.H., Xie D., Suchard M.A., Rambaut A., Drummond A.J. BEAST 2: a software platform for Bayesian evolutionary analysis. PloS Comput. Biol. 2014;10(4):e1003537. doi: 10.1371/journal.pcbi.1003537. PubMed DOI PMC
Burriel-Carranza B., Tarroso P., Els J., Garder A., Soorae P., Mohammd A.A., Tubati S.R.K., Eltayeb M.M., Shan J.N., Tejero-Cicuéndez H., Simó-Riudalbas M., Pleguezuelos J.M., Fernández-Guiberteau D., Šmíd J., Carranza S. An integrative assesment of th diversity phylogeny, distribution, and conservation of the terrestrial reptiles (Sauropsida, Squamata) of the United Arab Emirates. PLoS ONE. 2019;14(5):e0216273. PubMed PMC
Carranza S., Xipell M., Tarroso P., Gardner A.S., Arnold E.N., Robinson M.D., Simó-Riudalbas M., Vasconcelos R., de Pous P., Amat F., Šmíd J., Sindaco R., Metallinou M., Els J., Pleguezuelos J.M., Machado L., Donaire D., Martínez G., Garcia-Porta J., Mazuch T., Wilms T., Gebhart J., Aznar J., Gallego J., Zwanzig B.M., Fernandez-Guiberteau D., Papenfuss T., Al Saadi S., Alghafri A., Khalifa S., Al Farqani H., Bilal S.B., Alazri I.S., Al Adhoobi A.S., Al Omairi Z.S., Al Shariani M., Al Kiyumi A., Al Sariri T., Al Shukaili A.S., Al Akhzami S.N. Diversity, distribution and conservation of the terrestrial reptiles of Oman (Sauropsida, Squamata) PLoS ONE. 2018;13(2):e0190389. doi: 10.1371/journal.pone.0190389. PubMed DOI PMC
Darriba D., Taboada G.L., Doallo R., Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat. Methods. 2012;9(772) doi: 10.1038/nmeth.2109. PubMed DOI PMC
Delima E.C., Al-Nasser A. New record of the Web-footed Sand Gecko, Stenodactylus arabicus (Haas, 1957) (Sauria: Gekkonidae), from Kuwait. Zool. Middle East. 2007;41(1):111–112. doi: 10.1080/09397140.2007.10638235. DOI
Disi A.M. Review of the lizard fauna of Jordan. Zool. Middle East. 2011;54(3):89–102. doi: 10.1080/09397140.2011.10648900. DOI
Disi, A.M., Modrý, D., Nečas, P., Rifai, L., 2001. The Amphibians and Reptiles of the Hashemite Kingdom of Jordan. An Atlas and Field guide. Edition Chimaira.
Drummond A.J., Bouckaert R.R. Cambridge University Press; 2017. Bayesian evolutionary analysis with BEAST.
Edgell H.S. Springer; 2006. Arabian deserts: Nature, Origin and Evolution.
Fathinia B., Gholamifard A., Rastegar-Pouyani N. First record of Stenodactylus arabicus (Haas, 1957) from Iran. Herpetozoa. 2014;36(3/4):169–173.
Fujita M.K., Papenfuss T.J. Molecular systematics of Stenodactylus (Gekkonidae), an Afro-Arabian gecko species complex. Mol. Phylogenet. Evol. 2011;58(1):71–75. doi: 10.1016/j.ympev.2010.10.014. PubMed DOI
Gallagher M.D. M.D. Gallagher; Bahrain: 1971. The Amphibians and Reptiles of Bahrain.
Gardner A.S. Edition Chimaira; 2013. The Amphibians and Reptiles of Oman and the UAE.
Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Sys. Biol. 2010;59(3):307–321. doi: 10.1093/sysbio/syq010. PubMed DOI
Haas G. Some amphibians and reptiles from Arabia. Proc. Calif. Acad. Sci. 1957;29:47–86.
Kalyaanamoorthy S., Minh B.Q., Wong T.K., Von Haeseler A., Jermiin L.S. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat. Methods. 2017;14(6):587–589. doi: 10.1038/nmeth.4285. PubMed DOI PMC
Katoh K., Rozewicki J., Yamada K.D. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief. Bioinformatics. 2019;20(4):1160–1166. doi: 10.1093/bib/bbx108. PubMed DOI PMC
Kearse M., Moir R., Wilson A., Stones-Havas S., Cheung M., Sturrock S., Buxton S., Cooper A., Markowitz S., Duran Ch., Thierer T., Ashton B., Meintjes P., Drummond A. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 2012;28(12):1647–1649. doi: 10.1093/bioinformatics/bts199. PubMed DOI PMC
Kluge A.G. Higher taxonomic categories of gekkonid lizards and their evolution. Bull. Am. Mus. Nat. His. 1967;135:1–59.
Kumar S., Stecher G., Li M., Knyaz C., Tamura K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol. Biol. Evol. 2018;35(6):1547–1549. doi: 10.1093/molbev/msy096. PubMed DOI PMC
Lanfear R., Frandsen P.B., Wright A.M., Senfeld T., Calcott B. PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Mol. Biol. Evol. 2016;34(3):772–773. doi: 10.1093/molbev/msw260. PubMed DOI
Metallinou M., Arnold E.N., Crochet P.A., Geniez P., Brito J.C., Lymberakis P., Baha El Din S., Sindaco R., Robinson M., Carranza S. Conquering the Sahara and Arabian deserts: systematics and biogeography of Stenodactylus geckos (Reptilia: Gekkonidae) BMC Evol. Biol. 2012;12(1):258. doi: 10.1186/1471-2148-12-258. PubMed DOI PMC
Metallinou M., Carranza S. New species of Stenodactylus (Squamata: Gekkonidae) from the Sharqiyah Sands in northeastern Oman. Zootaxa. 2013;3745(4):449–468. doi: 10.11646/zootaxa.3745.4.3. PubMed DOI
Miller, M.A., Pfeiffer, W., Schwartz, T., 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010 (phylo.org). https://doi.org/10.1109/GCE.2010.5676129.
Minh B.Q., Nguyen M.A.T., Von Haeseler A. Ultrafast approximation for phylogenetic bootstrap. Mol. Biol. Evol. 2013;30(5):1188–1195. doi: 10.1093/molbev/mst024. PubMed DOI PMC
Nazarov R.A., Melnikov D.A., Radjabizadeh M., Poyarkov N.A. A new species of short-fingered geckos Stenodactylus (Squamata, Geckonidae) from South Iran with taxonomic notes on validity of the genus Hass, 1957. Zootaxa. 2018;4457(1):93–113. doi: 10.11646/zootaxa.4457.1.4. PubMed DOI
Nguyen L.T., Schmidt H.A., Von Haeseler A., Minh B.Q. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol. Biol. Evol. 2015;32(1):268–274. doi: 10.1093/molbev/msu300. PubMed DOI PMC
Rambaut A., Drummond A.J., Xie D., Baele G., Suchard M.A. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Sys. Biol. 2018;67(5):901–904. doi: 10.1093/sysbio/syy032. PubMed DOI PMC
Scholz S., Siegenthaler F., Radspieler C., Wilms T.M. A new locality record of Phrynocephalus maculatus Anderson, 1872, from Jordan. Herpetozoa. 2013;25(3/4):174–179.
Sindaco R., Fedrighini N., Venchi A. Contribution to the herpetology of Jordan. Boll. Mus. reg. di Sci. nat. Turin. 1995;13(2):389–405.
Sindaco, R., Jeremčenko, V., 2008. The Reptiles of the Western Palearctic. 1. Annotated checklist and distributional atlas of the turtles, crocodiles, amphisbaenians and lizards of Europe, North Africa Middle East and Central Asia. Edizioni Belvedere.
Šmíd J., Carranza S., Kratochvíl L., Gvoždík V., Nasher A.K., Moravec J. Out of Arabia: a complex biogeographic history of multiple vicariance and dispersal events in the Gecko Genus Hemidactylus (Reptilia: Gekkonidae) PLoS ONE. 2013;8:e64018. doi: 10.1371/journal.pone.0064018. PubMed DOI PMC
Šmíd, J., Sindaco, R., Shobrak, M., Busais, S., Tamar, K., Aghová, T., Simó-Riudalbas, M., Tarroso, P., Geniez, P., Crochet, P.-A., Els, J., Burriel-Carranza, B., Tejero-Cicuéndez, H., Carranza, S., 2021. Diversity patterns and evolutionary history of Arabian squamates. J. Biogeogr., in press.
Tamar K., Carranza S., Sindaco R., Moravec J., Trape J.-F., Meiri S. Out of Africa: phylogeny and biogeography of the widespread genus Acanthodactylus (Reptilia: Lacertidae) Mol. Phylogenet. Evol. 2016;103:6–18. doi: 10.1016/j.ympev.2016.07.003. PubMed DOI
Trifinopoulos J., Nguyen L.T., Von Haeseler A., Minh B.Q. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res. 2016;44(W1):W232–W235. doi: 10.1093/nar/gkw256. PubMed DOI PMC
Uetz, P., Freed, P., Hošek, J. (Eds.), 2021. The Reptile Database. http://www.reptile-database.org/ (accessed February 2021).
Wittenberg, J., 1992. First record of Arabian toad-head agamid (Phrynocephalus arabicus) in Jordan. Zool Middle East 7, 59–64.