Expert opinion on NSCLC small specimen biomarker testing - Part 1: Tissue collection and management

. 2022 Sep ; 481 (3) : 335-350. [epub] 20220720

Jazyk angličtina Země Německo Médium print-electronic

Typ dokumentu časopisecké články, přehledy

Perzistentní odkaz   https://www.medvik.cz/link/pmid35857102
Odkazy

PubMed 35857102
PubMed Central PMC9485167
DOI 10.1007/s00428-022-03343-2
PII: 10.1007/s00428-022-03343-2
Knihovny.cz E-zdroje

Biomarker testing is crucial for treatment selection in advanced non-small cell lung cancer (NSCLC). However, the quantity of available tissue often presents a key constraint for patients with advanced disease, where minimally invasive tissue biopsy typically returns small samples. In Part 1 of this two-part series, we summarise evidence-based recommendations relating to small sample processing for patients with NSCLC. Generally, tissue biopsy techniques that deliver the greatest quantity and quality of tissue with the least risk to the patient should be selected. Rapid on-site evaluation can help to ensure sufficient sample quality and quantity. Sample processing should be managed according to biomarker testing requirements, because tissue fixation methodology influences downstream nucleic acid, protein and morphological analyses. Accordingly, 10% neutral buffered formalin is recommended as an appropriate fixative, and the duration of fixation is recommended not to exceed 24-48 h. Tissue sparing techniques, including the 'one biopsy per block' approach and small sample cutting protocols, can help preserve tissue. Cytological material (formalin-fixed paraffin-embedded [FFPE] cytology blocks and non-FFPE samples such as smears and touch preparations) can be an excellent source of nucleic acid, providing either primary or supplementary patient material to complete morphological and molecular diagnoses. Considerations on biomarker testing, reporting and quality assessment are discussed in Part 2.

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Kerr KM, Bibeau F, Thunnissen E, Botling J, Ryška A, Wolf J, Öhrling K, Burdon P, Malapelle U, Büttner R. The evolving landscape of biomarker testing for non-small cell lung cancer in Europe. Lung Cancer. 2021;154:161–175. doi: 10.1016/j.lungcan.2021.02.026. PubMed DOI

Hardtstock F, Myers D, Li T, Cizova D, Maywald U, Wilke T, Griesinger F. Real-world treatment and survival of patients with advanced non-small cell lung cancer: a German retrospective data analysis. BMC Cancer. 2020;20:260. doi: 10.1186/s12885-020-06738-z. PubMed DOI PMC

Lester J, Escriu C, Khan S, Hudson E, Mansy T, Conn A, Chan S, Powell C, Brock J, Conibear J, Nelless L, Nayar V, Zhuo X, Durand A, Amin A, Martin P, Zhang X, Pawar V. Retrospective analysis of real-world treatment patterns and clinical outcomes in patients with advanced non-small cell lung cancer starting first-line systemic therapy in the United Kingdom. BMC Cancer. 2021;21:515. doi: 10.1186/s12885-021-08096-w. PubMed DOI PMC

Tan L, Alexander M, Officer A, MacManus M, Mileshkin L, Jennens R, Herath D, de Boer R, Fox SB, Ball D, Solomon B. Survival difference according to mutation status in a prospective cohort study of Australian patients with metastatic non-small-cell lung carcinoma. Intern Med J. 2018;48:37–44. doi: 10.1111/imj.13491. PubMed DOI

Howlader N, Forjaz G, Mooradian MJ, Meza R, Kong CY, Cronin KA, Mariotto AB, Lowy DR, Feuer EJ. The effect of advances in lung-cancer treatment on population mortality. N Engl J Med. 2020;383:640–649. doi: 10.1056/NEJMoa1916623. PubMed DOI PMC

Jones CM, Brunelli A, Callister ME, Franks KN. Multimodality treatment of advanced non-small cell lung cancer: where are we with the evidence? Curr Surg Rep. 2018;6:5. doi: 10.1007/s40137-018-0202-0. PubMed DOI PMC

European Society for Medical Oncology (ESMO) (2020) Metastatic non-small-cell lung cancer: ESMO clinical practice guidelines for diagnosis, treatment and follow-up. Available from: https://www.esmo.org/content/download/347819/6934778/1/ESMO-CPG-mNSCLC-15SEPT2020.pdf. (cited 2021 25 November) PubMed

Gan Q, Roy-Chowdhuri S. Small but powerful: the promising role of small specimens for biomarker testing. J Am Soc Cytopathol. 2020;9:450–460. doi: 10.1016/j.jasc.2020.05.001. PubMed DOI

Dietel M, Bubendorf L, Dingemans AM, Dooms C, Elmberger G, Garcia RC, Kerr KM, Lim E, Lopez-Rios F, Thunnissen E, Van Schil PE, von Laffert M. Diagnostic procedures for non-small-cell lung cancer (NSCLC): recommendations of the European Expert Group. Thorax. 2016;71:177–184. doi: 10.1136/thoraxjnl-2014-206677. PubMed DOI PMC

Malapelle U, Tiseo M, Vivancos A, Kapp J, Serrano MJ, Tiemann M. Liquid biopsy for biomarker testing in non-small cell lung cancer: a European perspective. J Mol Pathol. 2021;2:255–273. doi: 10.3390/jmp2030022. DOI

Bosc C, Ferretti GR, Cadranel J, Audigier-Valette C, Besse B, Barlesi F, Decroisette C, Lantuejoul S, Arbib F, Moro-Sibilot D. Rebiopsy during disease progression in patients treated by TKI for oncogene-addicted NSCLC. Target Oncol. 2015;10:247–253. doi: 10.1007/s11523-014-0332-y. PubMed DOI

Murray S, Karavasilis V, Bobos M, Razis E, Papadopoulos S, Christodoulou C, Kosmidis P, Fountzilas G. Molecular predictors of response to tyrosine kinase inhibitors in patients with non-small-cell lung cancer. J Exp Clin Cancer Res. 2012;31:77. doi: 10.1186/1756-9966-31-77. PubMed DOI PMC

Tredan O, Wang Q, Pissaloux D, Cassier P, de la Fouchardiere A, Fayette J, Desseigne F, Ray-Coquard I, de la Fouchardiere C, Frappaz D, Heudel PE, Bonneville-Levard A, Flechon A, Sarabi M, Guibert P, Bachelot T, Perol M, You B, Bonnin N, Collard O, Leyronnas C, Attignon V, Baudet C, Sohier E, Villemin JP, Viari A, Boyault S, Lantuejoul S, Paindavoine S, Treillleux I, Rodriguez C, Agrapart V, Corset V, Garin G, Chabaud S, Perol D, Blay JY, ProfiLERi Molecular screening program to select molecular-based recommended therapies for metastatic cancer patients: analysis from the ProfiLER trial. Ann Oncol. 2019;30:757–765. doi: 10.1093/annonc/mdz080. PubMed DOI

Penault-Llorca F, Kerr K, Garrido P, Thunnissen E, Dequeker E, Normanno N, Patton S, Fairley J, Kapp J, de Ridder D, Ryška A, Moch H (2022) Expert opinion on NSCLC small specimen biomarker testing — Part 2: Analysis, reporting and quality assessment. Virchows Archiv. 10.1007/s00428-022-03344-1 PubMed PMC

Sung S, Heymann JJ, Crapanzano JP, Moreira AL, Shu C, Bulman WA, Saqi A. Lung cancer cytology and small biopsy specimens: diagnosis, predictive biomarker testing, acquisition, triage, and management. J Am Soc Cytopathol. 2020;9:332–345. doi: 10.1016/j.jasc.2020.04.014. PubMed DOI

National Comprehensive Cancer Network (NCCN) (2022) NCCN clinical practice guidelines in oncology: non–small cell lung cancer. Version 1. Available from: https://www.nccn.org/professionals/physician_gls/pdf/nscl.pdf. (cited 2022 31 January)

Babu Ps S, Marwah V, Katoch C, Garg Y, Kumar TA, Sharma M, Choudhary R, Peter DK, Chopra M, Bhati G (2021) Diagnostic yield and safety of bronchoscopic lung cryobiopsy in evaluation of lung mass. Cureus 13:e19940. http://europepmc.org/abstract/MED/34984115 PubMed PMC

Rivera MP, Mehta AC, Wahidi MM. Establishing the diagnosis of lung cancer: diagnosis and management of lung cancer, 3rd ed: American College of Chest Physicians Evidence-Based Clinical Practice Guidelines. Chest. 2013;143:e142S–e165S. doi: 10.1378/chest.12-2353. PubMed DOI

Tomassetti S, Maldonado F, Poletti V. COUNTERPOINT: should surgical lung biopsy still be performed for interstitial lung disease evaluation? No. Chest. 2021;160:2011–2014. doi: 10.1016/j.chest.2021.06.061. PubMed DOI

Boonsarngsuk V, Kanoksil W, Laungdamerongchai S. Comparison of diagnostic performances among bronchoscopic sampling techniques in the diagnosis of peripheral pulmonary lesions. J Thorac Dis. 2015;7:697–703. doi: 10.3978/j.issn.2072-1439.2015.04.31. PubMed DOI PMC

Asokkumar R, Yung Ka C, Loh T, Kah Ling L, Gek San T, Ying H, Tan D, Khor C, Lim T, Soetikno R. Comparison of tissue and molecular yield between fine-needle biopsy (FNB) and fine-needle aspiration (FNA): a randomized study. Endosc Int Open. 2019;7:E955–e963. doi: 10.1055/a-0903-2565. PubMed DOI PMC

Herth FJ, Eberhardt R, Vilmann P, Krasnik M, Ernst A. Real-time endobronchial ultrasound guided transbronchial needle aspiration for sampling mediastinal lymph nodes. Thorax. 2006;61:795–798. doi: 10.1136/thx.2005.047829. PubMed DOI PMC

Kovnat DM, Rath GS, Anderson WM, Snider G. Maximal extent of visualization of bronchial tree by flexible fiberoptic bronchoscopy. Am Rev Respir Dis. 1974;110:88–90. doi: 10.1164/arrd.1974.110.1.88. PubMed DOI

Jeffery P, Holgate S, Wenzel S, Endobronchial Biopsy Workshop Authors, Methods for the assessment of endobronchial biopsies in clinical research: application to studies of pathogenesis and the effects of treatment. Am J Respir Crit Care Med. 2003;168:S1–17. doi: 10.1164/rccm.200202-150ws. PubMed DOI

Genova C, Tagliabue E, Mora M, Aloè T, Dono M, Salvi S, Zullo L, Barisione E. Potential application of cryobiopsy for histo-molecular characterization of mediastinal lymph nodes in patients with thoracic malignancies: a case presentation series and implications for future developments. BMC Pulm Med. 2022;22:5. doi: 10.1186/s12890-021-01814-x. PubMed DOI PMC

Haentschel M, Boeckeler M, Ehab A, Wagner R, Spengler W, Steger V, Boesmueller H, Horger M, Lewis RA, Fend F, Kanz L, Bonzheim I, Hetzel J. Cryobiopsy increases the EGFR detection rate in non-small cell lung cancer. Lung Cancer. 2020;141:56–63. doi: 10.1016/j.lungcan.2019.12.008. PubMed DOI

Hetzel J, Eberhardt R, Herth FJ, Petermann C, Reichle G, Freitag L, Dobbertin I, Franke KJ, Stanzel F, Beyer T, Möller P, Fritz P, Ott G, Schnabel PA, Kastendieck H, Lang W, Morresi-Hauf AT, Szyrach MN, Muche R, Shah PL, Babiak A, Hetzel M. Cryobiopsy increases the diagnostic yield of endobronchial biopsy: a multicentre trial. Eur Respir J. 2012;39:685–690. doi: 10.1183/09031936.00033011. PubMed DOI

Leslie KO, Wick MR (2011) Practical Pulmonary Pathology: A diagnostic approach. 2nd Edn, 2011, Elsevier Saunders

Domagala-Kulawik J. The relevance of bronchoalveolar lavage fluid analysis for lung cancer patients. Expert Rev Respir Med. 2020;14:329–337. doi: 10.1080/17476348.2020.1708720. PubMed DOI

Calle ASM, Navarro N, Inchaurraga I, Furest I, Lera R, Moragon EM. CT-guided transthoracic fine-needle aspiration vs core needle biopsy in diagnosis of lung cancer: a retrospective comparison of diagnostic accuracy. Eur Respir J. 2016;48:PA3860. doi: 10.1183/13993003.congress-2016.PA3860. DOI

Rolfo C, Mack P, Scagliotti GV, Aggarwal C, Arcila ME, Barlesi F, Bivona T, Diehn M, Dive C, Dziadziuszko R, Leighl N, Malapelle U, Mok T, Peled N, Raez LE, Sequist L, Sholl L, Swanton C, Abbosh C, Tan D, Wakelee H, Wistuba I, Bunn R, Freeman-Daily J, Wynes M, Belani C, Mitsudomi T, Gandara D. Liquid biopsy for advanced NSCLC: a consensus statement from the International Association for the Study of Lung Cancer. J Thorac Oncol. 2021;16:1647–1662. doi: 10.1016/j.jtho.2021.06.017. PubMed DOI

de Biase D, Visani M, Malapelle U, Simonato F, Cesari V, Bellevicine C, Pession A, Troncone G, Fassina A, Tallini G. Next-generation sequencing of lung cancer EGFR exons 18–21 allows effective molecular diagnosis of small routine samples (cytology and biopsy) PLoS ONE. 2013;8:e83607. doi: 10.1371/journal.pone.0083607. PubMed DOI PMC

Sherwood JL, Brown H, Rettino A, Schreieck A, Clark G, Claes B, Agrawal B, Chaston R, Kong BSG, Choppa P, Nygren AOH, Deras IL, Kohlmann A. Key differences between 13 KRAS mutation detection technologies and their relevance for clinical practice. ESMO Open. 2017;2:e000235. doi: 10.1136/esmoopen-2017-000235. PubMed DOI PMC

Rossi G, Bargellini I, Bonifazi M, Camplese P, Candoli P, Ceron L, Gasparini S, Granone PL, Grossi F, Iezzi R, Marchetti A, Maur M, Poletti V, Posa A, Trisolini R, Veltri A, Zito-Marino F. Optimised tumour sampling and processing by a multidisciplinary approach for an accurate diagnosis in non-small cell lung cancer. Eur Med J Oncol. 2019;7:90–99.

Matias-Guiu X, Stanta G, Carneiro F, Ryska A, Hoefler G, Moch H, European Society of Pathology The leading role of pathology in assessing the somatic molecular alterations of cancer: position paper of the European Society of Pathology. Virchows Arch. 2020;476:491–497. doi: 10.1007/s00428-020-02757-0. PubMed DOI PMC

Gullo I, Marques A, Pinto R, Cirnes L, Schmitt F. Morphological control for molecular testing: a practical approach. J Clin Pathol. 2021;74:331–333. doi: 10.1136/jclinpath-2020-206890. PubMed DOI

Deans ZC, Costa JL, Cree I, Dequeker E, Edsjö A, Henderson S, Hummel M, Ligtenberg MJ, Loddo M, Machado JC, Marchetti A, Marquis K, Mason J, Normanno N, Rouleau E, Schuuring E, Snelson KM, Thunnissen E, Tops B, Williams G, van Krieken H, Hall JA. Integration of next-generation sequencing in clinical diagnostic molecular pathology laboratories for analysis of solid tumours; an expert opinion on behalf of IQN Path ASBL. Virchows Arch. 2017;470:5–20. doi: 10.1007/s00428-016-2025-7. PubMed DOI PMC

Rolfo C, Mack PC, Scagliotti GV, Baas P, Barlesi F, Bivona TG, Herbst RS, Mok TS, Peled N, Pirker R, Raez LE, Reck M, Riess JW, Sequist LV, Shepherd FA, Sholl LM, Tan DSW, Wakelee HA, Wistuba II, Wynes MW, Carbone DP, Hirsch FR, Gandara DR. Liquid biopsy for advanced non-small cell lung cancer (NSCLC): a statement paper from the IASLC. J Thorac Oncol. 2018;13:1248–1268. doi: 10.1016/j.jtho.2018.05.030. PubMed DOI

Roy-Chowdhuri S, Chen H, Singh RR, Krishnamurthy S, Patel KP, Routbort MJ, Manekia J, Barkoh BA, Yao H, Sabir S, Broaddus RR, Medeiros LJ, Staerkel G, Stewart J, Luthra R. Concurrent fine-needle aspirations and core needle biopsies: a comparative study of substrates for next-generation sequencing in solid organ malignancies. Mod Pathol. 2017;30:499–508. doi: 10.1038/modpathol.2016.228. PubMed DOI

Roy-Chowdhuri S, Dacic S, Ghofrani M, Illei PB, Layfield LJ, Lee C, Michael CW, Miller RA, Mitchell JW, Nikolic B, Nowak JA, Pastis NJ, Jr, Rauch CA, Sharma A, Souter L, Billman BL, Thomas NE, VanderLaan PA, Voss JS, Wahidi MM, Yarmus LB, Gilbert CR. Collection and handling of thoracic small biopsy and cytology specimens for ancillary studies: guideline from the College of American Pathologists in collaboration with the American College of Chest Physicians, Association for Molecular Pathology, American Society of Cytopathology, American Thoracic Society, Pulmonary Pathology Society, Papanicolaou Society of Cytopathology, Society of Interventional Radiology, and Society of Thoracic Radiology. Arch Pathol Lab Med. 2020;144:933–958. doi: 10.5858/arpa.2020-0119-CP. PubMed DOI

von Laffert M, Warth A, Penzel R, Schirmacher P, Kerr KM, Elmberger G, Schildhaus HU, Büttner R, Lopez-Rios F, Reu S, Kirchner T, Pauwels P, Specht K, Drecoll E, Höfler H, Aust D, Baretton G, Bubendorf L, Stallmann S, Fisseler-Eckhoff A, Soltermann A, Tischler V, Moch H, Penault-Llorca F, Hager H, Schäper F, Lenze D, Hummel M, Dietel M. Multicenter immunohistochemical ALK-testing of non-small-cell lung cancer shows high concordance after harmonization of techniques and interpretation criteria. J Thorac Oncol. 2014;9:1685–1692. doi: 10.1097/jto.0000000000000332. PubMed DOI

Velizheva NP, Rechsteiner MP, Wong CE, Zhong Q, Rössle M, Bode B, Moch H, Soltermann A, Wild PJ, Tischler V. Cytology smears as excellent starting material for next-generation sequencing-based molecular testing of patients with adenocarcinoma of the lung. Cancer Cytopathol. 2017;125:30–40. doi: 10.1002/cncy.21771. PubMed DOI

Jain D, Allen TC, Aisner DL, Beasley MB, Cagle PT, Capelozzi VL, Hariri LP, Lantuejoul S, Miller R, Mino-Kenudson M, Monaco SE, Moreira A, Raparia K, Rekhtman N, Roden AC, Roy-Chowdhuri S, da Cunha Santos G, Thunnissen E, Troncone G, Vivero M. Rapid on-site evaluation of endobronchial ultrasound-guided transbronchial needle aspirations for the diagnosis of lung cancer: a perspective from members of the Pulmonary Pathology Society. Arch Pathol Lab Med. 2018;142:253–262. doi: 10.5858/arpa.2017-0114-SA. PubMed DOI

Jain D, Nambirajan A, Borczuk A, Chen G, Minami Y, Moreira AL, Motoi N, Papotti M, Rekhtman N, Russell PA, Savic Prince S, Yatabe Y, Bubendorf L, Committee IP. Immunocytochemistry for predictive biomarker testing in lung cancer cytology. Cancer Cytopathol. 2019;127:325–339. doi: 10.1002/cncy.22137. PubMed DOI PMC

Wahidi MM, Herth F, Yasufuku K, Shepherd RW, Yarmus L, Chawla M, Lamb C, Casey KR, Patel S, Silvestri GA, Feller-Kopman DJ. Technical aspects of endobronchial ultrasound-guided transbronchial needle aspiration: CHEST guideline and expert panel report. Chest. 2016;149:816–835. doi: 10.1378/chest.15-1216. PubMed DOI

van der Heijden EH, Casal RF, Trisolini R, Steinfort DP, Hwangbo B, Nakajima T, Guldhammer-Skov B, Rossi G, Ferretti M, Herth FF, Yung R, Krasnik M, World Association for B. Interventional Pulmonology TFoSG Guideline for the acquisition and preparation of conventional and endobronchial ultrasound-guided transbronchial needle aspiration specimens for the diagnosis and molecular testing of patients with known or suspected lung cancer. Respiration. 2014;88:500–517. doi: 10.1159/000368857. PubMed DOI

Fassina A, Corradin M, Zardo D, Cappellesso R, Corbetti F, Fassan M. Role and accuracy of rapid on-site evaluation of CT-guided fine needle aspiration cytology of lung nodules. Cytopathology. 2011;22:306–312. doi: 10.1111/j.1365-2303.2010.00802.x. PubMed DOI

Sung S, Crapanzano JP, DiBardino D, Swinarski D, Bulman WA, Saqi A. Molecular testing on endobronchial ultrasound (EBUS) fine needle aspirates (FNA): impact of triage. Diagn Cytopathol. 2018;46:122–130. doi: 10.1002/dc.23861. PubMed DOI

Bott MJ, James B, Collins BT, Murray BA, Puri V, Kreisel D, Krupnick AS, Patterson GA, Broderick S, Meyers BF, Crabtree TD. A prospective clinical trial of telecytopathology for rapid interpretation of specimens obtained during endobronchial ultrasound-fine needle aspiration. Ann Thorac Surg. 2015;100:201–205. doi: 10.1016/j.athoracsur.2015.02.090. PubMed DOI PMC

Lin O, Rudomina D, Feratovic R, Sirintrapun SJ. Rapid on-site evaluation using telecytology: a major cancer center experience. Diagn Cytopathol. 2019;47:15–19. doi: 10.1002/dc.23925. PubMed DOI PMC

Do H, Dobrovic A. Sequence artifacts in DNA from formalin-fixed tissues: causes and strategies for minimization. Clin Chem. 2015;61:64–71. doi: 10.1373/clinchem.2014.223040. PubMed DOI

Kapp JR, Diss T, Spicer J, Gandy M, Schrijver I, Jennings LJ, Li MM, Tsongalis GJ, de Castro DG, Bridge JA, Wallace A, Deignan JL, Hing S, Butler R, Verghese E, Latham GJ, Hamoudi RA. Variation in pre-PCR processing of FFPE samples leads to discrepancies in BRAF and EGFR mutation detection: a diagnostic RING trial. J Clin Pathol. 2015;68:111–118. doi: 10.1136/jclinpath-2014-202644. PubMed DOI PMC

Talaulikar D, Shadbolt B, McNiven M, Dahlstrom JE. DNA amplification from formalin-fixed decalcified paraffin-embedded bone marrow trephine specimens: does the duration of storage matter? Pathology. 2008;40:702–706. doi: 10.1080/00313020802436410. PubMed DOI

Karlsson C, Karlsson MG. Effects of long-term storage on the detection of proteins, DNA, and mRNA in tissue microarray slides. J Histochem Cytochem. 2011;59:1113–1121. doi: 10.1369/0022155411423779. PubMed DOI PMC

Einaga N, Yoshida A, Noda H, Suemitsu M, Nakayama Y, Sakurada A, Kawaji Y, Yamaguchi H, Sasaki Y, Tokino T, Esumi M. Assessment of the quality of DNA from various formalin-fixed paraffin-embedded (FFPE) tissues and the use of this DNA for next-generation sequencing (NGS) with no artifactual mutation. PLoS ONE. 2017;12:e0176280. doi: 10.1371/journal.pone.0176280. PubMed DOI PMC

Zhong Q, Wagner U, Kurt H, Molinari F, Cathomas G, Komminoth P, Barman-Aksözen J, Schneider-Yin X, Rey JP, Vassella E, Rogel U, Diebold J, McKee T, Jochum W, Kashofer K, Hofman P, Zischka M, Moch H, Rechsteiner M, Wild PJ. Multi-laboratory proficiency testing of clinical cancer genomic profiling by next-generation sequencing. Pathol Res Pract. 2018;214:957–963. doi: 10.1016/j.prp.2018.05.020. PubMed DOI

Hedegaard J, Thorsen K, Lund MK, Hein AM, Hamilton-Dutoit SJ, Vang S, Nordentoft I, Birkenkamp-Demtröder K, Kruhøffer M, Hager H, Knudsen B, Andersen CL, Sørensen KD, Pedersen JS, Ørntoft TF, Dyrskjøt L. Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue. PLoS ONE. 2014;9:e98187. doi: 10.1371/journal.pone.0098187. PubMed DOI PMC

Barua S, Wang G, Mansukhani M, Hsiao S, Fernandes H. Key considerations for comprehensive validation of an RNA fusion NGS panel. Pract Lab Med. 2020;21:e00173. doi: 10.1016/j.plabm.2020.e00173. PubMed DOI PMC

Choi SE, Hong SW, Yoon SO. Proposal of an appropriate decalcification method of bone marrow biopsy specimens in the era of expanding genetic molecular study. J Pathol Transl Med. 2015;49:236–242. doi: 10.4132/jptm.2015.03.16. PubMed DOI PMC

Marczyk M, Fu C, Lau R, Du L, Trevarton AJ, Sinn BV, Gould RE, Pusztai L, Hatzis C, Symmans WF. The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues. BMC Cancer. 2019;19:1189. doi: 10.1186/s12885-019-6363-0. PubMed DOI PMC

Kirchner M, Neumann O, Volckmar AL, Stögbauer F, Allgäuer M, Kazdal D, Budczies J, Rempel E, Brandt R, Talla SB, von Winterfeld M, Leichsenring J, Bochtler T, Krämer A, Springfeld C, Schirmacher P, Penzel R, Endris V, Stenzinger A (2019) RNA-based detection of gene fusions in formalin-fixed and paraffin-embedded solid cancer samples. Cancers (Basel) 11:1309. 10.3390/cancers11091309 PubMed PMC

Bass BP, Engel KB, Greytak SR, Moore HM. A review of preanalytical factors affecting molecular, protein, and morphological analysis of formalin-fixed, paraffin-embedded (FFPE) tissue: how well do you know your FFPE specimen? Arch Pathol Lab Med. 2014;138:1520–1530. doi: 10.5858/arpa.2013-0691-RA. PubMed DOI

Singh VM, Salunga RC, Huang VJ, Tran Y, Erlander M, Plumlee P, Peterson MR. Analysis of the effect of various decalcification agents on the quantity and quality of nucleic acid (DNA and RNA) recovered from bone biopsies. Ann Diagn Pathol. 2013;17:322–326. doi: 10.1016/j.anndiagpath.2013.02.001. PubMed DOI

Aisner DL, Rumery MD, Merrick DT, Kondo KL, Nijmeh H, Linderman DJ, Doebele RC, Thomas N, Chesnut PC, Varella-Garcia M, Franklin WA, Camidge DR. Do more with less: tips and techniques for maximizing small biopsy and cytology specimens for molecular and ancillary testing: the University of Colorado experience. Arch Pathol Lab Med. 2016;140:1206–1220. doi: 10.5858/arpa.2016-0156-RA. PubMed DOI PMC

Cerci JJ, Tabacchi E, Bogoni M, Delbeke D, Pereira CC, Cerci RJ, Krauzer C, Sakamoto DG, Fanti S, Vitola JV. Comparison of CT and PET/CT for biopsy guidance in oncological patients. Eur J Nucl Med Mol Imaging. 2017;44:1269–1274. doi: 10.1007/s00259-017-3658-8. PubMed DOI

Bubendorf L, Lantuejoul S, de Langen AJ, Thunnissen E. Nonsmall cell lung carcinoma: diagnostic difficulties in small biopsies and cytological specimens: number 2 in the series ‘Pathology for the clinician’ edited by Peter Dorfmüller and Alberto Cavazza. Eur Respir Rev. 2017;26:170007. doi: 10.1183/16000617.0007-2017. PubMed DOI PMC

Sundling KE, Cibas ES. Ancillary studies in pleural, pericardial, and peritoneal effusion cytology. Cancer Cytopathol. 2018;126(Suppl 8):590–598. doi: 10.1002/cncy.22021. PubMed DOI

Alshaikh S, Lapadat R, Atieh MK, Mehrotra S, Barkan GA, Wojcik EM, Pambuccian SE. The utilization and utility of immunostains in body fluid cytology. Cancer Cytopathol. 2020;128:384–391. doi: 10.1002/cncy.22256. PubMed DOI

DiBardino DM, Rawson DW, Saqi A, Heymann JJ, Pagan CA, Bulman WA. Next-generation sequencing of non-small cell lung cancer using a customized, targeted sequencing panel: emphasis on small biopsy and cytology. Cytojournal. 2017;14:7. doi: 10.4103/1742-6413.202602. PubMed DOI PMC

Shidham VB. Cell Blockistry: chemistry and art of cell-block making - a detailed review of various historical options with recent advances. Cytojournal. 2019;16:12. doi: 10.4103/cytojournal.cytojournal_20_19. PubMed DOI PMC

Heymann JJ, Bulman WA, Maxfield RA, Powell CA, Halmos B, Sonett J, Beaubier NT, Crapanzano JP, Mansukhani MM, Saqi A. Molecular testing guidelines for lung adenocarcinoma: utility of cell blocks and concordance between fine-needle aspiration cytology and histology samples. Cytojournal. 2014;11:12. doi: 10.4103/1742-6413.132989. PubMed DOI PMC

Kanagal-Shamanna R, Portier BP, Singh RR, Routbort MJ, Aldape KD, Handal BA, Rahimi H, Reddy NG, Barkoh BA, Mishra BM, Paladugu AV, Manekia JH, Kalhor N, Chowdhuri SR, Staerkel GA, Medeiros LJ, Luthra R, Patel KP. Next-generation sequencing-based multi-gene mutation profiling of solid tumors using fine needle aspiration samples: promises and challenges for routine clinical diagnostics. Mod Pathol. 2014;27:314–327. doi: 10.1038/modpathol.2013.122. PubMed DOI

Lindeman NI, Cagle PT, Aisner DL, Arcila ME, Beasley MB, Bernicker EH, Colasacco C, Dacic S, Hirsch FR, Kerr K, Kwiatkowski DJ, Ladanyi M, Nowak JA, Sholl L, Temple-Smolkin R, Solomon B, Souter LH, Thunnissen E, Tsao MS, Ventura CB, Wynes MW, Yatabe Y. Updated molecular testing guideline for the selection of lung cancer patients for treatment with targeted tyrosine kinase inhibitors: guideline from the College of American Pathologists, the International Association for the Study of Lung Cancer, and the Association for Molecular Pathology. J Mol Diagn. 2018;20:129–159. doi: 10.1016/j.jmoldx.2017.11.004. PubMed DOI

Pisapia P, Pepe F, Sgariglia R, Nacchio M, Russo G, Conticelli F, Girolami I, Eccher A, Bellevicine C, Vigliar E, Malapelle U, Troncone G. Next generation sequencing in cytology. Cytopathology. 2021;32:588–595. doi: 10.1111/cyt.12974. PubMed DOI PMC

Thoracic Tumours: WHO Classification of Tumours, 5th Edition, Volume 5. Available from: https://publications.iarc.fr/Book-And-Report-Series/Who-Classification-Of-Tumours/Thoracic-Tumours-2021. (cited 2021 24 November)

Cane P, Linklater KM, Nicholson AG, Peake MD, Gosney J. Morphological and genetic classification of lung cancer: variation in practice and implications for tailored treatment. Histopathology. 2015;67:216–224. doi: 10.1111/his.12638. PubMed DOI

Thunnissen E, Boers E, Heideman DAM, Grünberg K, Kuik DJ, Noorduin A, van Oosterhout M, Pronk D, Seldenrijk C, Sietsma H, Smit EF, van Suylen R, von der Thusen J, Vrugt B, Wiersma A, Witte BI, den Bakker M. Correlation of immunohistochemical staining p63 and TTF-1 with EGFR and K-ras mutational spectrum and diagnostic reproducibility in non-small cell lung carcinoma. Virchows Arch. 2012;461:629–638. doi: 10.1007/s00428-012-1324-x. PubMed DOI

Edwards SL, Roberts C, McKean ME, Cockburn JS, Jeffrey RR, Kerr KM. Preoperative histological classification of primary lung cancer: accuracy of diagnosis and use of the non-small cell category. J Clin Pathol. 2000;53:537–540. doi: 10.1136/jcp.53.7.537. PubMed DOI PMC

Loo PS, Thomas SC, Nicolson MC, Fyfe MN, Kerr KM. Subtyping of undifferentiated non-small cell carcinomas in bronchial biopsy specimens. J Thorac Oncol. 2010;5:442–447. doi: 10.1097/JTO.0b013e3181d40fac. PubMed DOI

Travis WD, Brambilla E, Nicholson AG, Yatabe Y, Austin JHM, Beasley MB, Chirieac LR, Dacic S, Duhig E, Flieder DB, Geisinger K, Hirsch FR, Ishikawa Y, Kerr KM, Noguchi M, Pelosi G, Powell CA, Tsao MS, Wistuba I. The 2015 World Health Organization Classification of lung tumors: impact of genetic, clinical and radiologic advances since the 2004 classification. J Thorac Oncol. 2015;10:1243–1260. doi: 10.1097/JTO.0000000000000630. PubMed DOI

Travis WD, Brambilla E, Noguchi M, Nicholson AG, Geisinger K, Yatabe Y, Ishikawa Y, Wistuba I, Flieder DB, Franklin W, Gazdar A, Hasleton PS, Henderson DW, Kerr KM, Petersen I, Roggli V, Thunnissen E, Tsao M. Diagnosis of lung cancer in small biopsies and cytology: implications of the 2011 International Association for the Study of Lung Cancer/American Thoracic Society/European Respiratory Society classification. Arch Pathol Lab Med. 2013;137:668–684. doi: 10.5858/arpa.2012-0263-RA. PubMed DOI PMC

Yatabe Y, Dacic S, Borczuk AC, Warth A, Russell PA, Lantuejoul S, Beasley MB, Thunnissen E, Pelosi G, Rekhtman N, Bubendorf L, Mino-Kenudson M, Yoshida A, Geisinger KR, Noguchi M, Chirieac LR, Bolting J, Chung J-H, Chou T-Y, Chen G, Poleri C, Lopez-Rios F, Papotti M, Sholl LM, Roden AC, Travis WD, Hirsch FR, Kerr KM, Tsao M-S, Nicholson AG, Wistuba I, Moreira AL. Best practices recommendations for diagnostic immunohistochemistry in lung cancer. J Thorac Oncol. 2019;14:377–407. doi: 10.1016/j.jtho.2018.12.005. PubMed DOI PMC

International Association for the Study of Lung Cancer (IASLC) (2020) IASLC atlas of diagnostic immunohistochemistry. Available from: https://s3.us-east-1.amazonaws.com/fonteva-customer-media/00D3i000000D3mbEAC/TRGNDBDv_IASLC_Atlas_2020_Interactive_pdf. (cited 2021 24 November)

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