Species diversity, systematic revision and molecular phylogeny of Ganodermataceae (Polyporales, Basidiomycota) with an emphasis on Chinese collections

. 2022 Jul ; 101 () : 287-415. [epub] 20220520

Status PubMed-not-MEDLINE Jazyk angličtina Země Nizozemsko Médium print-electronic

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid36059897

Ganodermataceae is one of the main families of macrofungi since species in the family are both ecologically and economically important. The double-walled basidiospores with ornamented endospore walls are the characteristic features of Ganodermataceae. It is a large and complex family; although many studies have focused on Ganodermataceae, the global diversity, geographic distribution, taxonomy and molecular phylogeny of Ganodermataceae still remained incompletely understood. In this work, taxonomic and phylogenetic studies on worldwide species of Ganodermataceae were carried out by morphological examination and molecular phylogenetic analyses inferred from six gene loci including the internal transcribed spacer regions (ITS), the large subunit of nuclear ribosomal RNA gene (nLSU), the second largest subunit of RNA polymerase II gene (rpb2), the translation elongation factor 1-α gene (tef1), the small subunit mitochondrial rRNA gene (mtSSU) and the small subunit nuclear ribosomal RNA gene (nSSU). A total of 1 382 sequences were used in the phylogenetic analyses, of which 817 were newly generated, including 132 sequences of ITS, 139 sequences of nLSU, 83 sequences of rpb2, 124 sequences of tef1, 150 sequences of mtSSU and 189 sequences of nSSU. The combined six-gene dataset included sequences from 391 specimens representing 146 taxa from Ganodermataceae. Based on morphological and phylogenetic analyses, 14 genera were confirmed in Ganodermataceae: Amauroderma, Amaurodermellus, Cristataspora, Foraminispora, Furtadoella, Ganoderma, Haddowia, Humphreya, Magoderna, Neoganoderma, Sanguinoderma, Sinoganoderma, Tomophagus and Trachydermella. Among these genera, Neoganoderma gen. nov. is proposed for Ganoderma neurosporum; Sinoganoderma gen. nov. is proposed for Ganoderma shandongense; Furtadoella gen. nov. is proposed to include taxa previously belonging to Furtadoa since Furtadoa is a homonym of a plant genus in the Araceae; Trachydermella gen. nov. is proposed to include Trachyderma tsunodae since Trachyderma is a homonym of a lichen genus in the Pannariaceae. Twenty-three new species, viz., Ganoderma acaciicola, G. acontextum, G. alpinum, G. bubalinomarginatum, G. castaneum, G. chuxiongense, G. cocoicola, G. fallax, G. guangxiense, G. puerense, G. subangustisporum, G. subellipsoideum, G. subflexipes, G. sublobatum, G. tongshanense, G. yunlingense, Haddowia macropora, Sanguinoderma guangdongense, Sa. infundibulare, Sa. longistipitum, Sa. melanocarpum, Sa. microsporum and Sa. tricolor are described. In addition, another 33 known species are also described in detail for comparison. Scanning electron micrographs of basidiospores of 10 genera in Ganodermataceae are provided. A key to the accepted genera of Ganodermataceae and keys to the accepted species of Ganoderma, Haddowia, Humphreya, Magoderna, Sanguinoderma and Tomophagus are also provided. In total, 278 species are accepted as members of Ganodermataceae including 59 species distributed in China. Taxonomic novelties: New genera: Furtadoella B.K. Cui & Y.F. Sun, Neoganoderma B.K. Cui & Y.F. Sun, Sinoganoderma B.K. Cui, J.H. Xing & Y.F. Sun and Trachydermella B.K. Cui & Y.F. Sun; New species: Ganoderma acaciicola B.K. Cui, J.H. Xing & Y.F. Sun, G. acontextum B.K. Cui, J.H. Xing & Vlasák, G. alpinum B.K. Cui, J.H. Xing & Y.F. Sun, G. bubalinomarginatum B.K. Cui, J.H. Xing & Y.F. Sun, G. castaneum B.K. Cui, J.H. Xing & Y.F. Sun, G. chuxiongense B.K. Cui, J.H. Xing & Y.F. Sun, G. cocoicola B.K. Cui, J.H. Xing & Y.F. Sun, G. fallax B.K. Cui, J.H. Xing & Vlasák, G. guangxiense B.K. Cui, J.H. Xing & Y.F. Sun, G. puerense B.K. Cui, J.H. Xing & Y.F. Sun, G. subangustisporum B.K. Cui, J.H. Xing & Y.F. Sun, G. subellipsoideum B.K. Cui, J.H. Xing & Y.F. Sun, G. subflexipes B.K. Cui, J.H. Xing & Y.F. Sun, G. sublobatum B.K. Cui, J.H. Xing & Y.F. Sun, G. tongshanense B.K. Cui, J.H. Xing & Y.F. Sun, G. yunlingense B.K. Cui, J.H. Xing & Y.F. Sun, Haddowia macropora B.K. Cui, Vlasák & Y.F. Sun, Sanguinoderma guangdongense B.K. Cui & Y.F. Sun, Sa. infundibulare B.K. Cui & Y.F. Sun, Sa. longistipitum B.K. Cui & Y.F. Sun, Sa. melanocarpum B.K. Cui & Y.F. Sun, Sa. microsporum B.K. Cui & Y.F. Sun and Sa. tricolor B.K. Cui & Y.F. Sun; New combinations: Furtadoella biseptata (Costa-Rezende et al.) B.K. Cui & Y.F. Sun, Fu. brasiliensis (Singer) B.K. Cui & Y.F. Sun, Fu. corneri (Gulaid & Ryvarden) B.K. Cui & Y.F. Sun, Neoganoderma neurosporum (J.S. Furtado) B.K. Cui & Y.F. Sun, Sinoganoderma shandongense (J.D. Zhao & L.W. Xu) B.K. Cui, J.H. Xing & Y.F. Sun and Trachydermella tsunodae (Yasuda ex Lloyd) B.K. Cui & Y.F. Sun. Citation: Sun Y-F, Xing J-H, He X-L, Wu D-M, Song C-G, Liu S, Vlasák J, Gates G, Gibertoni TB, Cui B-K (2022). Species diversity, systematic revision and molecular phylogeny of Ganodermataceae (Polyporales, Basidiomycota) with an emphasis on Chinese collections. Studies in Mycology 101: 287-415. doi: 10.3114/sim.2022.101.05.

Zobrazit více v PubMed

Adaskaveg JE, Gilbertson RL. (1986). Cultural studies and genetics of sexuality of

Aime MC, Henkel TW, Ryvarden L. (2003). Studies in Neotropical polypores 15: New and interesting species from Guyana. Mycologia 95: 614–619. PubMed

Aime L, Ryvarden L, Henkel TW. (2007). Studies in Neotropical polypores 22. Additional new and rare species from Guyana. Synopsis Fungorum 23: 15–31.

Ainsworth GC, Bisby GR. (1971). Dictionary of the fungi. Commonwealth Mycological Institute, UK.

Badotti F, de Oliveira FS, Garcia CF, PubMed PMC

Binder M, Justo A, Riley R, PubMed

Boddy L, Büntgen U, Egli S,

Bolaños AC, Bononi VLR, de Mello Gugliotta A,

Bresadola G. (1912).

Bresadola G. (1915).

Cabarroi-Hernández M, Villalobos-Arámbula AR, Torres-Torres MG, PubMed PMC

Campacci TVS, Gugliotta AM. (2009). A review of

Cao Y. (2013). Taxonomy and phylogeny of Ganoderma in China. Ph.D. dissertation. The University of Chinese Academy of Sciences in Shenyang, China.

Cao Y, Yuan HS. (2012).

Cao Y, Wu SH, Dai YC. (2012). Species clarification of the prize medicinal

Chan PM, Kanagasabapathy G, Tan YS, PubMed PMC

Coelho G, Cortez VG, Guerrero RT. (2007). New morphological data on

Coetzee MPA, Marincowitz S, Muthelo VG, PubMed PMC

Corner EJH. (1983). Ad Polyporaceas I.

Costa-Rezende DH, Gugliotta AM, Góes-Neto A,

Costa-Rezende DH, Robledo GL, Góes-Neto A, PubMed PMC

Costa-Rezende DH, Góes-Neto A, Drechsler-Santos ER. (2020a). Studies on Brazilian

Costa-Rezende DH, Robledo GL, Drechsler-Santos ER,

Crous PW, Wingfield MJ, Schumacher RK, PubMed PMC

Crous PW, Wingfield MJ, Le Roux , PubMed PMC

Crous PW, Wingfield MJ, Richardson DM, PubMed PMC

Crous PW, Wingfield MJ, Burgess TI, PubMed PMC

Crous PW, Wingfield MJ, Burgess TI, PubMed PMC

Crous PW, Luangsa-ard JJ, Wingfield MJ, PubMed PMC

Cui BK, Li HJ, Ji X,

Dai YC. (2012). Polypore diversity in China with an annotated checklist of Chinese polypores. Mycoscience 53: 49–80.

Dai YC, Yang ZL, Cui BK,

De Lima Júnior N, Gibertoni BT, Malosso E. (2014). Delimitation of some Neotropical laccate PubMed

Decock C, Ryvarden L. (2020).

Donk MA. (1948). Notes on Malesian fungi. I. Bulletin du Jardin Botanique de Buitenzorg 17: 473–482.

Douanla-Meli C, Langer E. (2009).

Farris JS, Kallersjo M, Kluge AG,

Foroutan A, Vaidya JG. (2007). Record of new species of

Fryssouli V, Zervakis GI, Polemis E, PubMed PMC

Furtado JS. (1967a). Some tropical species of

Furtado JS. (1967b). Species of

Gibertoni T, Bernicchia A, Ryvarden L,

Glen M, Bougher NL, Francis AA,

Gomes-Silva AC, Baltazar JM, Ryvarden L,

Gomes-Silva AC, Gibertoni TB. (2012). Neotypification of

Gomes-Silva AC, De Lima-Júnior NC, Malosso E,

Gottlieb AM, Ferrer E, Wright JE. (2000). rDNA analyses as an aid to the taxonomy of species of

Gulaid H, Ryvarden L. (1998). Two new species of

Hall TA. (1999). Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.

Hapuarachchi KK, Karunarathna SC, Phengsintham P,

Hapuarachchi KK, Karunarathna SC, Raspé O,

Hapuarachchi KK, Karunarathna SC, McKenzie EHC,

Hapuarachchi KK, Karunarathna SC, Phengsintham P,

He J, Luo ZL, Tang SM, PubMed PMC

He SC, Yu HF. (1989). The family

Henao-M LG. (1997). Afiloforales de Colombia III:

Humphrey CJ. (1938). Notes on some

Imazeki R. (1952). A contribution to the fungus flora of Dutch New Guinea. Bulletin of the Government Forest Experimental Station Meguro 57: 87–128.

Ipulet P, Ryvarden L. (2005). New and interesting polypores from Uganda. Synopsis Fungorum 20: 87–99.

Jong WYL, Show PL, Ling TC, PubMed

Justo A, Miettinen O, Floudas D, PubMed

Katoh K, Standley DM. (2013). MAFFT Multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology Evolution 30: 772–780. PubMed PMC

Kim HK, Seo GS, Kim HG. (2001). Comparison of characteristics of

Kinge TR, Mih AM. (2011).

Kinge TR, Mih AM. (2014).

Le XT, Le QHN, Pham ND,

Le XT, Le QHN, Bui HT,

Li MJ, Yuan HS. (2015). Type studies on

Li TH, Hu HP, Deng WQ,

Liao B, Chen XC, Han JP, PubMed PMC

Liu H, Guo LJ, Li SL,

Liu YJ, Whelen S, Hall BD. (1999). Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Molecular Biology Evolution 16: 1799–1808. PubMed

Loyd AL, Held BW, Barnes CW, PubMed PMC

Luangharn T, Karunarathna SC, Mortimer PE, PubMed PMC

Luangharn T, Karunarathna SC, Mortimer PE,

Luangharn T, Karunarathna SC, Dutta AK, PubMed PMC

Maddison WP, Maddison DR. (2017). Mesquite: a modular system for evolutionary analysis. Version 3.2. http://mesquiteproject.org.

Moncalvo JM, Wang HF, Hseu RS. (1995). Phylogenetic relationships in

Moncalvo JM, Ryvarden LA. (1997). Nomenclatural study of the

Murrill WA. (1902). The

Murrill WA. (1905).

Murrill WA. (1907). Some Philippine

Murrill WA. (1908a). Additional Philippine

Murrill WA. (1908b).

Náplavová K, Beck T, Pristaš P,

Nylander JAA. (2004). MrModeltest v2. Evolutionary Biology Centre, Uppsala University, Program distributed by the author.

Otieno NC. (1968).

Papp V. (2016). The first validly published laccate

Patouillard NT. (1887). Les hyménomycètes d’Europe. Paris.

Patouillard NT. (1889). Le genre

Patouillard NT. (1907). Champignons nouveaux du Tonkin. Bulletin de la Société Mycologique de France 23: 69–79.

Patouillard NT. (1914). Quelques Champignons du Congo. Bulletin de la Société Mycologique de France 30: 336–346.

Petersen JH. (1996). Farvekort. The Danish Mycological Society’s colour-chart. Foreningen til Svampekundskabens Fremme. Greve.

Pilotti CA. (2005). Stem rots of oil palm caused by PubMed

Rehner SA, Buckley E. (2005). A PubMed

Robledo GL, Newman DS, Popoff OF,

Ronquist F, Huelsenbeck JP. (2003). MrBayes 3: bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574. PubMed

Ryvarden L. (1974). Type studies in the

Ryvarden L. (1981). Type studies in the

Ryvarden L. (1983). Type studies in the

Ryvarden L. (1989) Type studies in the

Ryvarden L. (2000). Studies in neotropical polypores 2. A preliminary key to neotropical species of

Ryvarden L. (2004a). Studies in neotropical polypores 19. Two wood-inhabiting

Ryvarden L. (2004b). Neotropical polypores. Part 1. Introduction,

Ryvarden L. (2015). Type studies in

Ryvarden L. (2018). Studies in African

Ryvarden L. (2020). A new African

Ryvarden L, Johansen I. (1980). A preliminary polypores flora of East Africa. Fungiflora, Oslo: 1–636.

Schoch CL, Seifert KA, Huhndorf S, PubMed PMC

Shen LL, Wang M, Zhou JL, PubMed PMC

Smith BJ, Sivasithamparam K. (2003). Morphological studies of

Song J, Cui BK. (2017). Phylogeny, divergence time and historical biogeography of PubMed PMC

Song J, Xing JH, Decock C,

Sotome K, Hattori T, Ota Y. (2011). Taxonomic study on a threatened polypore,

Stamatakis A. (2014). RAxML Version 8: a tool for phylogenetic analyses and post analyses of large phylogenies. Bioinformatics 30: 1312–1313. PubMed PMC

Steyaert RL. (1961). Genus

Steyaert RL. (1967). Les

Steyaert RL. (1972). Species of

Steyaert RL. (1980). Study of Some

Sun YF, Costa-Rezende DH, Xing JH, PubMed PMC

Swofford DL. (2002). PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer Associates, Sunderland.

Tchotet Tchoumi JM, Coetzee MPA, Rajchenberg M, PubMed

Tchotet Tchoumi JM, Coetzee MPA, Rajchenberg M,

Teixeira AR. (1992). New combinations and new names in the

Teng SC. (1963). Fungi of China. Beijing Science Press, China.

Torrend C. (1920). Les polyporacées du Brésil 1. Polyporacées stipités. Brotéria Série Botânica 18: 121–143.

Torres-Torres MG, Guzmán-Dávalos L. (2012). The morphology of

Torres-Torres MG, Guzmán-Dávalos L, De Mello AG. (2008).

Vilgalys R, Hester M. (1990). Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several PubMed PMC

Wang DM. (2005). Phylogenetic study of Ganoderma in China. Ph.D. dissertation. The University of Chinese Academy of Sciences in Beijing, China.

Wang DM, Wu SH. (2010).

Wang DM, Wu SH. (2014). Two species of

Wang DM, Yao YJ. (2005). Intrastrain internal transcribed spacer heterogeneity in PubMed

Wang DM, Wu SH, Su CH,

Wang DM, Wu SH, Yao YJ. (2014). Clarification of the concept of PubMed PMC

Wang H, Deng W, Shen MH, PubMed

Wang XC, Xi RJ, Li Y, PubMed PMC

Welti S, Courtecuisse R. (2010). The

White TJ, Bruns T, Lee S,

Xing JH. (2019). Species diversity, taxonomy and phylogeny of Ganoderma. Ph.D. dissertation. Beijing Forestry University, China.

Xing JH, Song J, Decock C,

Xing JH, Sun YF, Han YL, PubMed PMC

Ye L, Karunarathna SC, Mortimer PE,

Zhang XQ. (1994). One new species and one new record of

Zhang Y, Jiang Y, Zhang M, PubMed

Zhao CL, Cui BK. (2013). Morphological and molecular identification of four new resupinate species of PubMed

Zhao JD. (1989a) Studies on the taxonomy of

Zhao JD. (1989b). The

Zhao JD, Zhang XQ. (1986a). Taxonomic studies on

Zhao JD, Zhang XQ. (1986b). Taxonomic studies on

Zhao JD, Zhang XQ. (2000). Chinese Fungi No.1 vol. 18. Ganodermataceae. Beijing Science Press, China.

Zhao JD, Xu LW, Zhang XQ. (1979). Taxonomic studies on the subfamily

Zhao JD, Xu LW, Zhang XQ. (1983). Taxonomic studies on

Zhao JD, Zhang XQ, Xu LW. (1984). Studies on the taxonomy of

Zhou LW, Cao Y, Wu SH, PubMed

Zmitrovich IV. (2018). Conspectus systematis Polyporacearum v. 1.0. Folia Cryptogamica Petropolitana 6: 68.

Najít záznam

Citační ukazatele

Pouze přihlášení uživatelé

Možnosti archivace

Nahrávání dat ...