Phyllobacteriaceae: a family of ecologically and metabolically diverse bacteria with the potential for different applications
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, přehledy
PubMed
38038797
DOI
10.1007/s12223-023-01107-2
PII: 10.1007/s12223-023-01107-2
Knihovny.cz E-zdroje
- Klíčová slova
- Bacterial diversity, Bioremediation, Eco-physiology of Phyllobacteriaceae, Mesorhizobial diversity, Mesorhizobium, Nitrogen fixation, Phyllobacteriaceae,
- MeSH
- Bacteria genetika MeSH
- DNA bakterií metabolismus MeSH
- dusík metabolismus MeSH
- Fabaceae * mikrobiologie MeSH
- fylogeneze MeSH
- lidé MeSH
- Phyllobacteriaceae * genetika MeSH
- RNA ribozomální 16S MeSH
- sekvenční analýza DNA MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- přehledy MeSH
- Názvy látek
- DNA bakterií MeSH
- dusík MeSH
- RNA ribozomální 16S MeSH
The family Phyllobacteriaceae is a heterogeneous assemblage of more than 146 species of bacteria assigned to its existing 18 genera. Phylogenetic analyses have shown great phylogenetic diversity and also suggested about incorrect classification of several species that need to be reassessed for their proper phylogenetic classification. However, almost 50% of the family members belong to the genus Mesorhizobium only, of which the majority are symbiotic nitrogen fixers associated with different legumes. Other major genera are Phyllobacterium, Nitratireductor, Aquamicrobium, and Aminobacter. Nitrogen-fixing, legume nodulating members are present in Aminobacter and Phyllobacterium as well. Aquamicrobium spp. can degrade environmental pollutants, like 2,4-dichlorophenol, 4-chloro-2-methylphenol, and 4-chlorophenol. Chelativorans, Pseudaminobacter, Aquibium, and Oricola are the other genera that contain multiple species having diverse metabolic capacities, the rest being single-membered genera isolated from varied environments. In addition, heavy metal and antibiotic resistance, chemolithoautotrophy, poly-β-hydroxybutyrate storage, cellulase production, etc., are the other notable characteristics of some of the family members. In this report, we have comprehensively reviewed each of the species of the family Phyllobacteriaceae in their eco-physiological aspects and found that the family is rich with ecologically and metabolically highly diverse bacteria having great potential for human welfare and environmental clean-up.
Zobrazit více v PubMed
Alam M, Roy C, Pyne P, Agarwal A, George A, Ghosh W (2012) Whole-genome shotgun sequence of the sulfur-oxidizing chemoautotroph Pseudaminobacter salicylatoxidans KCT001. J Bacteriol 194:4743–4744. https://doi.org/10.1128/JB.00944-12 PubMed DOI PMC
Alam M, Fernandes S, Mandal S, Rameez MJ, Bhattacharya S, Peketi A, Mazumdar A, Ghosh W (2021)
Auling G, Busse HJ, Egli T, El-Banna T, Stackebrandt E (1993) Description of the Gram-negative, obligately aerobic, nitrilotriacetate (NTA)-utilizing bacteria as Chelatobacter heintzii, gen. nov., sp. nov., and Chelatococcus asaccharovorans, gen. nov., sp. nov. Syst Appl Microbiol 16:104–112. https://doi.org/10.1016/S0723-2020(11)80254-7 DOI
Baek J, Kim JH, Jeong J, Yoon JH, Sukhoom A, Kim W (2020) Polyphasic taxonomic analysis of Nitratireductor arenosus sp. nov., isolated from sea sand. FEMS Microbiol Lett 367:fnaa104. https://doi.org/10.1093/femsle/fnaa104
Bambauer A, Rainey FA, Stackebrandt E, Winter J (1998) Characterization of Aquamicrobium defluvii gen. nov. sp. nov., a thiophene-2-carboxylate-metabolizing bacterium from activated sludge. Arch Microbiol 169:293–302. https://doi.org/10.1007/s002030050575 PubMed DOI
Chen Q, Ni HY, Zhuang W, Sun ZG, Yang ZZ, Wang HM, He Q, He J (2015) Nitratireductor soli sp. nov., isolated from phenol-contaminated soil. Antonie Van Leeuwenhoek 108:1139–1146. https://doi.org/10.1007/s10482-015-0567-3 PubMed DOI
Chhetri G, Kim J, Kim I, Kang M, So Y, Seo T (2021) Oryzicola mucosus gen. nov., sp. nov., a novel slime producing bacterium belonging to the family Phyllobacteriaceae isolated from the rhizosphere of rice plants. Antonie Van Leeuwenhoek 114:1925–1934. https://doi.org/10.1007/s10482-021-01651-2 PubMed DOI
Chung EJ, Park JA, Pramanik P, Bibi F, Jeon CO, Chung YR (2013) Hoeflea suaedae sp. nov., an endophytic bacterium isolated from the root of the halophyte Suaeda maritima. Int J Syst Evol Microbiol 63:2277–2281. https://doi.org/10.1099/ijs.0.045484-0 PubMed DOI
Deb C, Stackebrandt E, Pradella S, Saha A, Roy P (2004) Phylogenetically diverse new sulfur chemolithotrophs of alpha-proteobacteria isolated from Indian soils. Curr Microbiol 48:452–458. https://doi.org/10.1007/s00284-003-4250-y PubMed DOI
Doronina NV, Kaparullina EN, Trotsenko YA, Nörtemann B, Bucheli-Witschel M, Weilenmann HU, Egli T (2010) Chelativorans multitrophicus gen. nov., sp. nov. and Chelativorans oligotrophicus sp. nov., aerobic EDTA-degrading bacteria. Int J Syst Evol Microbiol 60:1044–1051. https://doi.org/10.1099/ijs.0.003152-0 PubMed DOI
Flores-Félix JD, Carro L, Velázquez E, Valverde Á, Cerda-Castillo E, García-Fraile P, Rivas R (2013) Phyllobacterium endophyticum sp. nov., isolated from nodules of Phaseolus vulgaris. Int J Syst Evol Microbiol 63:821–826. https://doi.org/10.1099/ijs.0.038497-0 PubMed DOI
Fritsche K, Auling G, Andreesen JR, Lechner U (1999) Defluvibacter lusatiae gen. nov., sp. nov., a new chlorophenol-degrading member of the α-2 subgroup of Proteobacteria. Syst Appl Microbiol 22:197–204. https://doi.org/10.1016/S0723-2020(99)80066-6 PubMed DOI
Hahn YK, Kim MS, Im WT (2017) Pseudaminobacter granuli sp. nov., isolated from granules used in a wastewater treatment plant. J Microbiol 55:607–611. https://doi.org/10.1007/s12275-017-7257-y PubMed DOI
Hameed A, Shahina M, Lai WA, Lin SY, Young LS, Liu YC, Hsu YH, Young CC (2015) Oricola cellulosilytica gen. nov., sp. nov., a cellulose-degrading bacterium of the family Phyllobacteriaceae isolated from surface seashore water, and emended descriptions of Mesorhizobium loti and Phyllobacterium myrsinacearum. Antonie Van Leeuwenhoek 107:759–771. https://doi.org/10.1007/s10482-014-0370-6 PubMed DOI
Han L, Mo Y, Feng Q, Zhang R, Zhao X, Lv J, Xie B (2016) Tianweitania sediminis gen. nov., sp. nov., a member of the family Phyllobacteriaceae, isolated from subsurface sediment core. Int J Syst Evol Microbiol 66:719–724. https://doi.org/10.1099/ijsem.0.000785 PubMed DOI
Hördt A, López MG, Meier-Kolthoff JP et al (2020) Analysis of 1,000+ type-strain genomes substantially improves taxonomic classification of Alphaproteobacteria. Front Microbiol 11:468. https://doi.org/10.3389/fmicb.2020.00468 PubMed DOI PMC
Hyeon JW, Jeong SE, Baek K, Jeon CORoseitalea porphyridii gen. nov., sp. nov., isolated from a red alga, and reclassification of Hoeflea suaedae Chung, et al (2017) 2013 as Pseudohoeflea suaedae gen. nov., comb. nov. Int J Syst Evol Microbiol 67:362–368. https://doi.org/10.1099/ijsem.0.001633 PubMed DOI
Jang GI, Hwang CY, Cho BC (2011) Nitratireductor aquimarinus sp. nov., isolated from a culture of the diatom Skeletonema costatum, and emended description of the genus Nitratireductor. Int J Syst Evol Microbiol 61:2676–2681. https://doi.org/10.1099/ijs.0.028373-0 PubMed DOI
Jarvis BDW, Van Berkum P, Chen WX, Nour SM, Fernandez MP, Cleyet-Marel JC, Gillis M (1997) Transfer of Rhizobium loti, Rhizobium huakuii, Rhizobium ciceri, Rhizobium mediterraneum, and Rhizobium tianshanense to Mesorhizobium gen. nov. Int J Syst Evol Microbiol 47:895–898. https://doi.org/10.1099/00207713-47-3-895 DOI
Jeong SE, Kim KH, Lhee D, Yoon HS, Quan ZX, Lee EY, Jeon CO (2019) Oceaniradius stylonematis gen. nov., sp. nov., isolated from a red alga, Stylonema cornu-cervi. Int J Syst Evol Microbiol 69:1967–1973. https://doi.org/10.1099/ijsem.0.003413 PubMed DOI
Jiang Z, Duan Y, Yang X, Yao B, Zeng T, Wang X, Feng Q, Qi M, Yang Q, Zhang X (2020) Nitratireductor alexandrii sp. nov., from phycosphere microbiota of toxic marine dinoflagellate Alexandrium tamarense. Int J Syst Evol Microbiol 70:4390–4397. https://doi.org/10.1099/ijsem.0.004302 PubMed DOI
Jiao YS, Yan H, Ji ZJ et al (2015) Phyllobacterium sophorae sp. nov., a symbiotic bacterium isolated from root nodules of Sophora flavescens. Int J Syst Evol Microbiol 65:399–406. https://doi.org/10.1099/ijs.0.067017-0 PubMed DOI
Jin HM, Kim JM, Jeon CO (2013) Aquamicrobium aestuarii sp. nov., a marine bacterium isolated from a tidal flat. Int J Syst Evol Microbiol 63:4012–4017. https://doi.org/10.1099/ijs.0.048561-0 PubMed DOI
Jurado V, Laiz L, Gonzalez JM, Hernandez-Marine M, Valens M, Saiz-Jimenez C (2005) Phyllobacterium catacumbae sp. nov., a member of the order “Rhizobiales” isolated from Roman catacombs. Int J Syst Evol Microbiol 55:1487–1490. https://doi.org/10.1099/ijs.0.63402-0 PubMed DOI
Kämpfer P, Müller C, Mau M, Neef A, Auling G, Busse HJ, Osborn AM, Stolz A (1999) Description of Pseudaminobacter gen. nov. with two new species, Pseudaminobacter salicylatoxidans sp. nov. and Pseudaminobacter defluvii sp. nov. Int J Syst Bacteriol 49:887–897. https://doi.org/10.1099/00207713-49-2-887 PubMed DOI
Kämpfer P, Martin E, Lodders N, Jäckel U (2009) Transfer of Defluvibacter lusatiensis to the genus Aquamicrobium as Aquamicrobium lusatiense comb. nov. and description of Aquamicrobium aerolatum sp. nov. Int J Syst Evol Microbiol 59:2468–2470. https://doi.org/10.1099/ijs.0.008730-0
Kämpfer P, Arun AB, Busse HJ, Zhang ZL, Young CC, Glaeser SP (2015) Chelativorans intermedius sp. nov. and proposal to reclassify Thermovum composti as Chelativorans composti comb. nov. Int J Syst Evol Microbiol 65:1646–1652. https://doi.org/10.1099/ijs.0.000155 PubMed DOI
Kang HS, Yang HL, Lee SD (2009) Nitratireductor kimnyeongensis sp. nov., isolated from seaweed. Int J Syst Evol Microbiol 59:1036–1039. https://doi.org/10.1099/ijs.0.65734-0 PubMed DOI
Katayama-Fujimura Y, Enokizono Y, Kaneko T, Kuraishi H (1983) Deoxyribonucleic acid homologies among species of the genus Thiobacillus. J Gen Appl Microbiol 29:287–295. https://doi.org/10.2323/jgam.29.287 DOI
Kim KH, Roh SW, Chang HW, Nam YD, Yoon JH, Jeon CO, Oh HM, Bae JW (2009) Nitratireductor basaltis sp. nov., isolated from black beach sand. Int J Syst Evol Microbiol 59:135–138. https://doi.org/10.1099/ijs.0.65784-0 PubMed DOI
Kim YS, Jeon YJ, Kim KH (2019) Salaquimonas pukyongi gen. nov., sp. nov., a novel bacterium within the family Phyllobacteriaceae. Int J Syst Evol Microbiol 69:3751–3756. https://doi.org/10.1099/ijsem.0.003659 PubMed DOI
Kim M, Kim W, Park W (2022) Aquibium microcysteis gen. nov., sp. nov., isolated from a Microcystis aeruginosa culture and reclassification of Mesorhizobium carbonis as Aquibium carbonis comb. nov. and Mesorhizobium oceanicum as Aquibium oceanicum comb. nov. Int J Syst Evol Microbiol 72. https://doi.org/10.1099/ijsem.0.005230
Knosel D (1962) Prufung von bakterien auf fa¨higkeit zur sternbildung. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg II Abt 116:79–100 (in German)
Knosel D (1984) Genus Phyllobacterium nom. rev. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 15. Int J Syst Bacteriol 34:355–357 DOI
Kong YH, Ren WT, Xu L, Cheng H, Zhou P, Wang CS, Wu YH, Xu XW (2022) Mesobacterium pallidum gen. nov., sp. nov., Heliomarina baculiformis gen. nov., sp. nov. and Oricola indica sp. nov., three novel Alphaproteobacteria members isolated from deep-sea water in the southwest Indian ridge. Int J Syst Evol Microbiol 72. https://doi.org/10.1099/ijsem.0.005236
Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Mol Biol Evol 35:1547–1549. https://doi.org/10.1093/molbev/msy096 PubMed DOI PMC
Labbé N, Parent S, Villemur R (2004) Nitratireductor aquibiodomus gen. nov., sp. nov., a novel alpha-proteobacterium from the marine denitrification system of the Montreal Biodome (Canada). Int J Syst Evol Microbiol 54:269–273. https://doi.org/10.1099/ijs.0.02793-0 PubMed DOI
Lai Q, Yu Z, Wang J, Zhong H, Sun F, Wang L, Wang B, Shao Z (2011a) Nitratireductor pacificus sp. nov., isolated from a pyrene-degrading consortium. Int J Syst Evol Microbiol 61:1386–1391. https://doi.org/10.1099/ijs.0.024356-0 PubMed DOI
Lai Q, Yu Z, Yuan J, Sun F, Shao Z (2011b) Nitratireductor indicus sp. nov., isolated from deep-sea water. Int J Syst Evol Microbiol 61:295–298. https://doi.org/10.1099/ijs.0.022962-0 PubMed DOI
León-Barrios M, Ramírez-Bahena MH, Igual JM, Peix Á, Velázquez E (2018) Phyllobacterium salinisoli sp. nov., isolated from a Lotus lancerottensis root nodule in saline soil from Lanzarote. Int J Syst Evol Microbiol 68:1085–1089. https://doi.org/10.1099/ijsem.0.002628 PubMed DOI
Li Y, Guo LM, Chang JP, Xie SJ, Piao CG, Li X (2016) Corticibacterium populi gen. nov., sp. nov., a member of the family Phyllobacteriaceae, isolated from bark of Populus×euramericana. Int J Syst Evol Microbiol 66:2617–2622. https://doi.org/10.1099/ijsem.0.001097 PubMed DOI
Li J, Huang J, Liao S, Wang G (2017) Pseudaminobacter manganicus sp. nov., isolated from sludge of a manganese mine. Int J Syst Evol Microbiol 67:1589–1594. https://doi.org/10.1099/ijsem.0.001765 PubMed DOI
Liang LX, Sun QW, Hui N, Zhang XX, Li LB, Liu L (2019) Phyllobacterium phragmitis sp. nov., an endophytic bacterium isolated from Phragmites australis rhizome in Kumtag Desert. Antonie Van Leeuwenhoek 112:661–668. https://doi.org/10.1007/s10482-018-1195-5 PubMed DOI
Lipski A, Kämpfer P (2012) Aquamicrobium ahrensii sp. nov. and Aquamicrobium segne sp. nov., isolated from experimental biofilters. Int J Syst Evol Microbiol 62:2511–2516. https://doi.org/10.1099/ijs.0.038224-0 PubMed DOI
Lustermans JJM, Bjerg JJ, Schramm A, Marshall IPG (2021) Phyllobacterium calauticae sp. nov. isolated from a microaerophilic veil transversed by cable bacteria in freshwater sediment. Antonie Van Leeuwenhoek 114:1877–1887. https://doi.org/10.1007/s10482-021-01647-y PubMed DOI
Lv R, Yang X, Fang N et al (2016) Draft genome sequence of “Paramesorhizobium deserti” A-3-ET, a strain highly resistant to diverse β-lactam antibiotics. Genome Announc 4:e00311-e316. https://doi.org/10.1128/genomeA.00311-16 PubMed DOI PMC
Manickam N, Pareek S, Kaur I, Singh NK, Mayilraj S (2012) Nitratireductor lucknowense sp. nov., a novel bacterium isolated from a pesticide contaminated soil. Antonie Van Leeuwenhoek 101:125–131. https://doi.org/10.1007/s10482-011-9623-9 PubMed DOI
Mantelin S, Saux MFL, Zakhia F et al (2006) Emended description of the genus Phyllobacterium and description of four novel species associated with plant roots: Phyllobacterium bourgognense sp. nov., Phyllobacterium ifriqiyense sp. nov., Phyllobacterium leguminum sp. nov. and Phyllobacterium brassicacearum sp. nov. Int J Syst Evol Microbiol 56:827–839. https://doi.org/10.1099/ijs.0.63911-0 PubMed DOI
Maynaud G, Willems A, Soussou S, Vidal C, Mauré L, Moulin L, Cleyet-Marel JC, Brunel B (2012) Molecular and phenotypic characterization of strains nodulating Anthyllis vulneraria in mine tailings, and proposal of Aminobacter anthyllidis sp. nov., the first definition of Aminobacter as legume-nodulating bacteria. Syst Appl Microbiol 35:65–72. https://doi.org/10.1016/j.syapm.2011.11.002 PubMed DOI
McDonald IR, Kämpfer P, Topp E et al (2005) Aminobacter ciceronei sp. nov. and Aminobacter lissarensis sp. nov., isolated from various terrestrial environments. Int J Syst Evol Microbiol 55:1827–1832. https://doi.org/10.1099/ijs.0.63716-0 PubMed DOI
Meng D, Liu YL, Gu PF et al (2021a) Chelativorans alearense sp. nov., a novel bacterial species isolated from soil in Alear. China Curr Microbiol 78:1656–1661. https://doi.org/10.1007/s00284-021-02428-6 PubMed DOI
Meng D, Liu YL, Gu PF et al (2021b) Chelativorans xinjiangense sp. nov., a novel bacterial species isolated from soil in Xinjiang. China Arch Microbiol 203:693–699. https://doi.org/10.1007/s00203-020-02064-x PubMed DOI
Mergaert J, Cnockaert MC, Swings J (2002) Phyllobacterium myrsinacearum (subjective synonym Phyllobacterium rubiacearum) emend. Int J Syst Evol Microbiol 52:1821–1823. https://doi.org/10.1099/00207713-52-5-1821 PubMed DOI
Mergaert J, Swings J (2005) Family IV. Phyllobacteriaceae fam. nov. In: Brenner DJ, Krieg NR, Staley JT (eds) Bergey’s manual of systematic bacteriology, in: Bergey’s Manual of Systematic Bacteriology. Springer, New York, p 393
Meyer O, Stackebrandt E, Auling G (1993) Reclassification of ubiquinone Q-10 containing carboxidotrophic bacteria: transfer of “[Pseudomonas] carboxydovorans” OM5T to Oligotropha, gen. nov., as Oligotropha carboxidovorans, comb. nov., transfer of “[Alcaligenes] carboxydus” DSM 1086T to Carbophilus, gen. nov., as Carbophilus carboxidus, comb. nov., transfer of “[Pseudomonas] compransoris” DSM 1231T to Zavarzinia, gen. nov., as Zavarzinia compransoris, comb. nov., and amended descriptions of the new genera. Syst Appl Microbiol 16:390–395. https://doi.org/10.1016/S0723-2020(11)80271-7 DOI
Mu Y, Zhou X, Liu L, Zhou XK, Zeng XC, Li WJ (2019) Pseudaminobacter arsenicus sp. nov., an arsenic-resistant bacterium isolated from arsenic-rich aquifers. Int J Syst Evol Microbiol 69:791–797. https://doi.org/10.1099/ijsem.0.003238 PubMed DOI
Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, Oxford, New York DOI
Olson RD, Assaf R, Brettin T et al (2023) Introducing the bacterial and viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR. Nucleic Acids Res 51:D678–D689. https://doi.org/10.1093/nar/gkac1003 PubMed DOI
Ou D, Huang H, Bai R, Li Q, Wang Y, Yin Y (2017) Nitratireductor aestuarii sp. nov., a marine alphaproteobacterium isolated from an estuary. Int J Syst Evol Microbiol 67:1637–1642. https://doi.org/10.1099/ijsem.0.001771 PubMed DOI
Pan XC, Geng S, Mei R et al (2014) Nitratireductor shengliensis sp. nov., isolated from an oil-polluted saline soil. Curr Microbiol 69:561–566. https://doi.org/10.1007/s00284-014-0624-6 PubMed DOI
Park Y, Ten LN, Maeng S, Chang Y, Jung HY, Kim MK (2021) Phyllobacterium pellucidum sp. nov., isolated from soil. Arch Microbiol 203:2647–2652. https://doi.org/10.1007/s00203-021-02205-w PubMed DOI
Roh SW, Kim KH, Nam YD et al (2008) Aliihoeflea aestuarii gen. nov., sp. nov., a novel bacterium isolated from tidal flat sediment. J Microbiol 46:594–598. https://doi.org/10.1007/s12275-008-0196-x PubMed DOI
Safronova VI, Sazanova AL, Kuznetsova IG et al (2018) Phyllobacterium zundukense sp. nov., a novel species of rhizobia isolated from root nodules of the legume species Oxytropis triphylla (Pall.) Pers. Int J Syst Evol Microbiol 68:1644–1651. https://doi.org/10.1099/ijsem.0.002722 PubMed DOI
Sánchez M, Ramírez-Bahena MH, Peix A, Lorite MJ, Sanjuán J, Velázquez E, Monza J (2014) Phyllobacterium loti sp. nov. isolated from nodules of Lotus corniculatus. Int J Syst Evol Microbiol 64:781–786. https://doi.org/10.1099/ijs.0.052993-0 PubMed DOI PMC
Sillanpää M (1997) Environmental fate of EDTA and DTPA. Rev Environ Contam Toxicol 152:85–111. https://doi.org/10.1007/978-1-4612-1964-4_3 PubMed DOI
Urakami T, Araki H, Oyanagi H, Suzuki KI, Komagata K (1992) Transfer of Pseudomonas aminovorans (den Dooren de Jong 1926) to Aminobacter gen. nov. as Aminobacter aminovorans comb. nov. and description of Aminobacter aganoensis sp. nov. and Aminobacter niigataensis sp. nov. Int J Syst Bacteriol 42:84–92. https://doi.org/10.1099/00207713-42-1-84 DOI
Valverde A, Velázquez E, Fernández-Santos F et al (2005) Phyllobacterium trifolii sp. nov., nodulating Trifolium and Lupinus in Spanish soils. Int J Syst Evol Microbiol 55:1985–1989. https://doi.org/10.1099/ijs.0.63551-0 PubMed DOI
Volpiano CG, Sant’Anna FH, Ambrosini A, et al (2021) Genomic metrics applied to Rhizobiales (Hyphomicrobiales): species reclassification, identification of unauthentic genomes and false type strains. Front Microbiol 12:614957. https://doi.org/10.3389/fmicb.2021.614957 PubMed DOI PMC
Wang X, Zhou CF, Cheng JR, Cao SF, Yang HX, Zhao JR (2021) Aquamicrobium zhengzhouense sp. nov., a bacterium isolated from farmland soil applied with amino acid fertilizer. Curr Microbiol 78:3798–3803. https://doi.org/10.1007/s00284-021-02600-y PubMed DOI
Willems A (2014) The family Phyllobacteriaceae, in: Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. (Eds.), The prokaryotes. Springer Berlin Heidelberg, Berlin, Heidelberg, pp. 355–418. https://doi.org/10.1007/978-3-642-30197-1_298
Wu ZG, Wang F, Gu CG, Zhang YP, Yang ZZ, Wu XW, Jiang X (2014) Aquamicrobium terrae sp. nov., isolated from the polluted soil near a chemical factory. Antonie Van Leeuwenhoek 105:1131–1137. https://doi.org/10.1007/s10482-014-0174-8 PubMed DOI
Xia X, Li J, Zhou Z, Wang D, Huang J, Wang G (2018) High-quality-draft genome sequence of the multiple heavy metal resistant bacterium Pseudaminobacter manganicus JH-7T. Stand Genomic Sci 13:29. https://doi.org/10.1186/s40793-018-0330-2 PubMed DOI PMC
Xu CF, Zhang L, Huang JW, Chen K, Li SP, Jiang JD (2017) Aquamicrobium soli sp. nov., a bacterium isolated from a chlorobenzoate-contaminated soil. Antonie Van Leeuwenhoek 110:305–312. https://doi.org/10.1007/s10482-016-0800-8 PubMed DOI
Yabe S, Aiba Y, Sakai Y, Hazaka M, Yokota A (2012) Thermovum composti gen. nov., sp. nov., an alphaproteobacterium from compost. Int J Syst Evol Microbiol 62:2991–2996. https://doi.org/10.1099/ijs.0.037812-0 PubMed DOI
Yang SH, Park MJ, Kwon KK (2021). Oricola thermophila sp. nov., a marine bacterium isolated from tidal flat sediment and emended description of the genus Oricola Hameed et al. 2015. Int J Syst Evol Microbiol 71. https://doi.org/10.1099/ijsem.0.004574
Ye Y, Yan C, Nie Y, Zhang J, Zhao Z, Zhang R, Xiao C, Wu M (2020) Nitratireductor mangrovi sp. nov., a nitrate-reducing bacterium isolated from mangrove soil. Curr Microbiol 77:1334–1340. https://doi.org/10.1007/s00284-020-01885-9 PubMed DOI
Yu Z, Zhuang L, Pan J, Wang Y, Zhou S (2016) Nitratireductor lacus sp. nov., isolated from Yuncheng Salt Lake. China Int J Syst Evol Microbiol 66:4963–4967. https://doi.org/10.1099/ijsem.0.001453 PubMed DOI
Zhang K, Tang S, Jiang Y, Zhang F, Zhang J, Qiu J, He J (2021) Pseudaminobacter soli sp. nov., isolated from paddy soil contaminated with heavy metals. Curr Microbiol 79:19. https://doi.org/10.1007/s00284-021-02717-0