The Influence of Tanning Chemical Agents on DNA Degradation: A Robust Procedure for the Analysis of Tanned Animal Hide-A Pilot Study
Status PubMed-not-MEDLINE Language English Country Switzerland Media electronic
Document type Journal Article
Grant support
VJ01010026
Ministry of the Interior
PubMed
38276276
PubMed Central
PMC10817434
DOI
10.3390/life14010147
PII: life14010147
Knihovny.cz E-resources
- Keywords
- degradation index, quantification, tanning, wildlife crime,
- Publication type
- Journal Article MeSH
Illegal wildlife trade is currently on the rise, and it is becoming one of the most lucrative crime sectors. The rarer the species, the higher the demand. Wildlife trade falls under international regulations, such as the CITES convention. Proving that this convention has been violated is a complex process and can be very difficult to do. DNA analysis methods remain (in many cases) the only way to determine whether a certain specimen originated from a protected animal species, a specific individual, or a species in which it is legal to trade. Tanned animal hides are a specific type of specimen. With this type of biological material, obtaining amplifiable DNA is often difficult. This pilot study aimed to map the effect of the chemicals used in the tanning process on the degradation of the DNA yielded from such samples. The DNA was quantified using two different approaches: qPCR and Qubit fluorometry. The degree of DNA fragmentation was assessed by determining the degradation index. The results indicate that reagents containing chromium have the greatest influence on DNA degradation. However, by using the presented protocol, enough amplifiable DNA can be obtained from hides treated with aluminum-based reagents.
2nd Faculty of Medicine Charles University 5 Úvalu 84 150 00 Prague Czech Republic
Bulovka University Hospital Budínova 2 180 81 Prague Czech Republic
Forensic DNA Service Budínova 2 180 81 Prague Czech Republic
Institute for Environmental Sciences Charles University Benátská 2 128 00 Prague Czech Republic
See more in PubMed
Scheffers B.R., Oliveira B.R., Lamb I., Edwards D.P. Global wildlife across the tree of life. Science. 2019;366:71–76. doi: 10.1126/science.aav5327. PubMed DOI
Maxwell S.L., Fuller R.A., Brooks T.M., Watson J.E.M. Biodiversity: The Ravages of Guns, Nets and Bulldozers. Nature. 2016;536:143–145. doi: 10.1038/536143a. PubMed DOI
CITES CITES Appendices I, II, and III. [(accessed on 16 October 2023)]. Available online: https://cites.org/eng/app/appendices.php.
World Bank Group Analysis of International Funding to Tackle Illegal Wildlife Trade. [(accessed on 16 October 2023)]. Available online: https://documents.worldbank.org/en/publication/documents-reports/documentdetail/695451479221164739/analysis-of-international-funding-to-tackle-illegal-wildlife-trade.
Smart U., Cihlar J.C., Budowle B. International Wildlife Trafficking: A Perspective on the Challenges and Potential Forensic Genetics Solutions. Forensic Sci. Int. Genet. 2021;54:102551. doi: 10.1016/j.fsigen.2021.102551. PubMed DOI
UNODC World Wildlife Crime Report—Trafficing in Protected Species. [(accessed on 16 October 2023)]. Available online: https://www.unodc.org/unodc/en/data-and-analysis/wildlife.html.
Khedkar G., Khedkar C., Prakash B., Khedkar A., Haymer D. DNA Barcode Based Identification of a Suspected Tiger Skin: A Case to Resolve Mimicry. Forensic Sci. Int. Rep. 2019;1:100027. doi: 10.1016/j.fsir.2019.100027. DOI
Vankova L., Vanek D. DNA-Based Identification of Big Cats and Traditional Chinese Medicine Artifacts in the Czech Republic. Forensic Sci. Int. Genet. Suppl. Ser. 2022;8:122–124. doi: 10.1016/j.fsigss.2022.10.005. DOI
Vanek D., Ehler E., Vanková L. Technical Note: Development of DNA Quantitation and STR Typing Systems for Panthera Tigris Species Determination and Individual Identification in Forensic Casework. Eur. J. Environ. Sci. 2021;11:113–118. doi: 10.14712/23361964.2021.13. DOI
Rajani C.V., Patki H.S., Simanta P., Surjith K., Deepa P.M., Pradeep M. Histomorphological Differentiation of the Skin of Leopard (Panthera pardus), Leopard Cat (Prionailurus bengalensis), Bengal Tiger (Panthera tigris), and Golden Jackal (Canis aureus) Vet. World. 2020;13:827–832. doi: 10.14202/vetworld.2020.827-832. PubMed DOI PMC
Votrubova J., Rihova P., Saskova L., Vanek D. Operation Tiger’s Eye: DNA Testing of Traditional Chinese Medicine Artifacts in the Czech Republic. Forensic Sci. Int. Genet. Suppl. Ser. 2017;6:e143–e144. doi: 10.1016/j.fsigss.2017.09.026. DOI
Kite M., Thompson R. Conservation of Leather and Related Materials. Routledge, Taylor & Francis Group; London, UK: 2011.
Koehler G., Hobson K.A. Effects of Tanning on the Stable Isotopic Compositions of Hair. Forensic Sci. Int. 2018;292:78–82. doi: 10.1016/j.forsciint.2018.08.020. PubMed DOI
Dubey R., Verma P., Kumar S. Cr (III) Genotoxicity and Oxidative Stress: An Occupational Health Risk for Leather Tannery Workers of South Asian Developing Countries. Toxicol. Ind. Health. 2022;38:112–126. doi: 10.1177/07482337211055131. PubMed DOI
Gouda S., Kerry R.G., Das A., Chauhan N.S. Wildlife Forensics: A Boon for Species Identification and Conservation Implications. Forensic Sci. Int. 2020;317:110530. doi: 10.1016/j.forsciint.2020.110530. PubMed DOI
Vuissoz A., Worobey M., Odegaard N., Bunce M., Machado C.A., Lynnerup N., Peacock E.E., Gilbert M.T.P. The Survival of PCR-Amplifiable DNA in Cow Leather. J. Archaeol. Sci. 2007;34:823–829. doi: 10.1016/j.jas.2006.09.002. DOI
Ražić S.E., Kopjar N., Kašuba V., Skenderi Z., Akalović J., Hrenović J. Evaluation of DNA-Damaging Effects Induced by Different Tanning Agents Used in the Processing of Natural Leather—Pilot Study on HepG2 Cell Line. Molecules. 2022;27:7030. doi: 10.3390/molecules27207030. PubMed DOI PMC
Hoffmann O.I., Kerekes A., Lipták N., Hiripi L., Bodo S., Szaloki G., Klein S., Ivics Z., Kues W.A., Bosze Z. Transposon-Based Reporter Marking Provides Functional Evidence for Intercellular Bridges in the Male Germline of Rabbits. PLoS ONE. 2016;11:e0154489. doi: 10.1371/journal.pone.0154489. PubMed DOI PMC
Dawoud Al-Bader M., Ali Al-Sarraf H. Housekeeping Gene Expression during Fetal Brain Development in the Rat—Validation by Semi-Quantitative RT-PCR. Dev. Brain Res. 2005;156:38–45. doi: 10.1016/j.devbrainres.2005.01.010. PubMed DOI
Vernarecci S., Ottaviani E., Agostino A., Mei E., Calandro L., Montagna P. Quantifiler® Trio Kit and Forensic Samples Management: A Matter of Degradation. Forensic Sci. Int. Genet. 2015;16:77–85. doi: 10.1016/j.fsigen.2014.12.005. PubMed DOI
Hedmark E., Ellegren H. Microsatellite Genotyping of DNA Isolated from Claws Left on Tanned Carnivore Hides. Int. J. Legal. Med. 2005;119:370–373. doi: 10.1007/s00414-005-0521-4. PubMed DOI
Onem E., Yorgancioglu A., Karavana H.A., Yilmaz O. Comparison of Different Tanning Agents on the Stabilization of Collagen via Differential Scanning Calorimetry. J. Therm. Anal. Calorim. 2017;129:615–622. doi: 10.1007/s10973-017-6175-x. DOI
Gould E.M., Taylor M.A., Holmes S.J. A More Consistent Method for Extracting and Amplifying DNA from Bee Wings. Apidologie. 2011;42:721–727. doi: 10.1007/s13592-011-0077-x. DOI
Vider J., Croaker A., Cox A.J., Raymond E., Rogers R., Adamson S., Doyle M., O’Brien B., Cripps A.W., West N.P. Comparison of Skin Biopsy Sample Processing and Storage Methods on High Dimensional Immune Gene Expression Using the Nanostring NCounter System. Diagn. Pathol. 2020;15:57. doi: 10.1186/s13000-020-00974-4. PubMed DOI PMC
Trivedi C.B., Keuschnig C., Larose C., Rissi D.V., Mourot R., Bradley J.A., Winkel M., Benning L.G. DNA/RNA Preservation in Glacial Snow and Ice Samples. Front. Microbiol. 2022;13:894893. doi: 10.3389/fmicb.2022.894893. PubMed DOI PMC
Gill P., Bleka Ø., Fonneløp A.E. Limitations of QPCR to Estimate DNA Quantity: An RFU Method to Facilitate Inter-Laboratory Comparisons for Activity Level, and General Applicability. Forensic Sci. Int. Genet. 2022;61:2–7. doi: 10.1016/j.fsigen.2022.102777. PubMed DOI
Zou Z.-T., Uphyrkina O.V., Fomenko P., Luo S.-J. The Development and Application of a Multiplex Short Tandem Repeat (STR) System for Identifying Subspecies, Individuals and Sex in Tigers. Integr. Zool. 2015;10:376–388. doi: 10.1111/1749-4877.12136. PubMed DOI
Bright J.-A., Taylor D., Curran J.M., Buckleton J.S. Degradation of Forensic DNA Profiles. Aust. J. Forensic Sci. 2013;45:445–449. doi: 10.1080/00450618.2013.772235. DOI
Schulze Johann K., Bauer H., Wiegand P., Pfeiffer H., Vennemann M. Detecting DNA Damage in Stored Blood Samples. Forensic Sci. Med. Pathol. 2022;19:50–59. doi: 10.1007/s12024-022-00549-3. PubMed DOI PMC
Pouliot B.P., Mass J., Kaplan L. Using Xrf for the Identification of Chrome Tanning in Leather; Proceedings of the 43rd Annual Meeting in Miami; Miami, FL, USA. 13–16 May 2015; p. 2015.