The Mutographs biorepository: A unique genomic resource to study cancer around the world

. 2024 Mar 13 ; 4 (3) : 100500. [epub] 20240206

Jazyk angličtina Země Spojené státy americké Médium print-electronic

Typ dokumentu časopisecké články, přehledy

Perzistentní odkaz   https://www.medvik.cz/link/pmid38325367

Grantová podpora
R21 CA191965 NCI NIH HHS - United States
U01 CA167551 NCI NIH HHS - United States
27145 Cancer Research UK - United Kingdom
Wellcome Trust - United Kingdom
001 World Health Organization - International

Odkazy

PubMed 38325367
PubMed Central PMC10943582
DOI 10.1016/j.xgen.2024.100500
PII: S2666-979X(24)00027-2
Knihovny.cz E-zdroje

Large-scale biorepositories and databases are essential to generate equitable, effective, and sustainable advances in cancer prevention, early detection, cancer therapy, cancer care, and surveillance. The Mutographs project has created a large genomic dataset and biorepository of over 7,800 cancer cases from 30 countries across five continents with extensive demographic, lifestyle, environmental, and clinical information. Whole-genome sequencing is being finalized for over 4,000 cases, with the primary goal of understanding the causes of cancer at eight anatomic sites. Genomic, exposure, and clinical data will be publicly available through the International Cancer Genome Consortium Accelerating Research in Genomic Oncology platform. The Mutographs sample and metadata biorepository constitutes a legacy resource for new projects and collaborations aiming to increase our current research efforts in cancer genomic epidemiology globally.

Associação de Combate ao Câncer em Goiás Hospital Araújo Jorge Goiânia Goiânia Brazil

Brazilian National Cancer Institute Rio de Janeiro Brazil

Cancer Ageing and Somatic Mutation Wellcome Sanger Institute Cambridge UK

Cancer Research Center Cancer Institute Tehran University of Medical Sciences Tehran Iran

Centro di Riferimento Oncologico di Aviano IRCCS Aviano Italy

Clinical Epidemiology N N Blokhin National Medical Research Centre of Oncology Moscow Russia

Department of Cancer Epidemiology and Genetics Masaryk Memorial Cancer Institute Brno Czech Republic

Department of Cellular and Molecular Medicine University of California San Diego La Jolla CA USA; Department of Bioengineering University of California San Diego La Jolla CA USA; Moores Cancer Center University of California San Diego La Jolla CA USA

Department of Environmental Epidemiology Nofer Institute of Occupational Medicine Łódź Poland

Department of Epidemiology A C Camargo Cancer Center São Paulo Brazil

Department of Epidemiology A C Camargo Cancer Center São Paulo Brazil; University of São Paulo Medical School São Paulo Brazil

Department of Internal Medicine Chiang Mai University Chiang Mai Thailand

Department of Pathology Radboud University Medical Centre Nijmegen the Netherlands

Department of Surgery Santa Casa School of Medicine São Paulo Brazil

Department of Urology University Hospital Center Zagreb Zagreb Croatia; University of Zagreb School of Medicine Zagreb Croatia

Departments of Surgery and Oncology McGill University Montreal QC Canada

Digestive Disease Research Institute Tehran University of Medical Sciences Tehran Iran

Division of Cancer Epidemiology and Genetics National Cancer Institute National Institutes of Health Rockville MD USA

Division of Cancer Epidemiology and Genetics National Cancer Institute Rockville MD USA

Division of Epidemiology Department of Quantitative Health Sciences Mayo Clinic Jacksonville FL USA; Division of Gastroenterology and Hepatology Department of Internal Medicine Mayo Clinic Jacksonville FL USA

Division of Molecular Epidemiology and Population Genomics Centre for Cancer Epidemiology Tata Memorial Centre Mumbai India

Early Cancer Institute University of Cambridge Cambridge UK

Environment and Lifestyle Epidemiology Branch International Agency for Research on Cancer Lyon France

Evidence Synthesis and Classification Branch International Agency for Research on Cancer Lyon France

Experimental Research Center Genomic Medicine Laboratory Hospital de Clínicas de Porto Alegre Porto Alegre Brazil; Post Graduate Program in Genetics and Molecular Biology Universidade Federal do Rio Grande do Sul Porto Alegre Brazil

Faculty of Health Sciences Palacky University Olomouc Czech Republic

Genomic Epidemiology Branch International Agency for Research on Cancer Lyon France

Hellenic Cooperative Oncology Group Athens Greece

Hospital Santa Rita AFECC Associação Feminina de Educação e Combate ao Câncer Vitoria Brazil

Institute of Public Health and Preventive Medicine 2nd Faculty of Medicine Charles University Prague Czech Republic; Department of Oncology 2nd Faculty of Medicine Charles University and Motol University Hospital Prague Czech Republic

Instituto de Oncología Angel Roffo Universidad de Buenos Aires Buenos Aires Argentina

Instituto Medicina Traslacional e Ingenieria Biomedica CONICET Buenos Aires Argentina

IOCPR International Organization for Cancer Prevention and Research Serbia Belgrade

Kilimanjaro Clinical Research Institute Kilimanjaro Christian Medical Centre and Kilimanjaro Christian Medical University College Moshi Tanzania

Laboratory of Genetic Diagnostic National Cancer Institute Vilnius Lithuania; Department of Botany and Genetics Institute of Biosciences Vilnius University Vilnius Lithuania

Laboratory of Molecular Medicine The Institute of Medical Science The University of Tokyo Minato ku Japan; Division of Cancer Genomics National Cancer Center Research Institute Chuo ku Japan

Leeds Institute of Medical Research at St James's University of Leeds Leeds UK

Moi University School of Public Health Eldoret Kenya

Molecular Medicine Center Department of Medical Chemistry and Biochemistry Medical Faculty Medical University of Sofia Sofia Bulgaria

Molecular Oncology Research Center Barretos Cancer Hospital Barretos Brazil

Molecular Oncology Research Center Barretos Cancer Hospital Barretos Brazil; Life and Health Sciences Research Institute School of Medicine Minho University Braga Portugal

Mount Sinai Hospital; Ontario Institute for Cancer Research Toronto ON Canada

National and Kapodistrian University of Athens Athens Greece

National Cancer Institute Bangkok Thailand

National Cancer Institute Bogotá Colombia

National Cancer Institute Kiev Ukraine

Observational and Pragmatic Research Institute Pte Ltd Singapore Singapore

Occupational Health and Toxicology National Center for Environmental Risk Monitoring National Institute of Public Health Bucharest Romania

Ontario Tumour Bank Ontario Institute for Cancer Research Toronto ON Canada

Pathology Department Hospital Universitario Fundación Santa Fe de Bogotá Bogotá Colombia

Regional Authority of Public Health Banská Bystrica Slovakia

Semmelweis University Budapest Hungary

The Maria Sklodowska Cure National Research Institute of Oncology Warsaw Poland

Translational Medicine Research Center Faculty of Medicine Prince of Songkla University Hat Yai Thailand

Unit of Biostatistics Epidemiology and Public Health Department of Cardio Thoraco Vascular Sciences and Public Health University of Padua Padova Italy

University Health Network Toronto ON Canada

University of Malawi College of Medicine Blantyre Malawi

Urology Department Carol Davila University of Medicine and Pharmacy Prof Dr Th Burghele Clinical Hospital Bucharest Romania

Zobrazit více v PubMed

ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium. Abascal F., Abeshouse A., Aburatani H., Adams D.J., Agrawal N., Ahn K.S., Ahn S.-M., Aikata H., Akbani R., et al. Pan-cancer analysis of whole genomes. Nature. 2020;578:82–93. doi: 10.1038/s41586-020-1969-6. PubMed DOI PMC

Priestley P., Baber J., Lolkema M.P., Steeghs N., de Bruijn E., Shale C., Duyvesteyn K., Haidari S., van Hoeck A., Onstenk W., et al. Pan-cancer whole-genome analyses of metastatic solid tumours. Nature. 2019;575:210–216. doi: 10.1038/s41586-019-1689-y. PubMed DOI PMC

Degasperi A., Zou X., Amarante T.D., Martinez-Martinez A., Koh G.C.C., Dias J.M.L., Heskin L., Chmelova L., Rinaldi G., Wang V.Y.W., et al. Substitution mutational signatures in whole-genome-sequenced cancers in the UK population. Science. 2022;376 doi: 10.1126/science.abl9283. PubMed DOI PMC

Fatumo S., Chikowore T., Choudhury A., Ayub M., Martin A.R., Kuchenbaecker K. A roadmap to increase diversity in genomic studies. Nat. Med. 2022;28:243–250. doi: 10.1038/s41591-021-01672-4. PubMed DOI PMC

Wojcik G.L., Graff M., Nishimura K.K., Tao R., Haessler J., Gignoux C.R., Highland H.M., Patel Y.M., Sorokin E.P., Avery C.L., et al. Genetic analyses of diverse populations improves discovery for complex traits. Nature. 2019;570:514–518. doi: 10.1038/s41586-019-1310-4. PubMed DOI PMC

Spratt D.E., Chan T., Waldron L., Speers C., Feng F.Y., Ogunwobi O.O., Osborne J.R. Racial/Ethnic Disparities in Genomic Sequencing. JAMA Oncol. 2016;2:1070–1074. doi: 10.1001/jamaoncol.2016.1854. PubMed DOI PMC

Parkin D.M. IARC Sci Publ; 1993. Studies of Cancer in Migrant Populations; pp. 1–10. PubMed

Piñeros M., Laversanne M., Barrios E., Cancela M.d.C., de Vries E., Pardo C., Bray F. An updated profile of the cancer burden, patterns and trends in Latin America and the Caribbean. Lancet Reg. Health. Am. 2022;13 doi: 10.1016/j.lana.2022.100294. PubMed DOI PMC

Morgan E., Soerjomataram I., Rumgay H., Coleman H.G., Thrift A.P., Vignat J., Laversanne M., Ferlay J., Arnold M. The Global Landscape of Esophageal Squamous Cell Carcinoma and Esophageal Adenocarcinoma Incidence and Mortality in 2020 and Projections to 2040: New Estimates From GLOBOCAN 2020. Gastroenterology. 2022;163:649–658.e2. doi: 10.1053/j.gastro.2022.05.054. PubMed DOI

Znaor A., Lortet-Tieulent J., Laversanne M., Jemal A., Bray F. International variations and trends in renal cell carcinoma incidence and mortality. Eur. Urol. 2015;67:519–530. doi: 10.1016/j.eururo.2014.10.002. PubMed DOI

Arnold M., Abnet C.C., Neale R.E., Vignat J., Giovannucci E.L., McGlynn K.A., Bray F. Global Burden of 5 Major Types of Gastrointestinal Cancer. Gastroenterology. 2020;159:335–349.e15. doi: 10.1053/j.gastro.2020.02.068. PubMed DOI PMC

Taubes G. Epidemiology faces its limits. Science. 1995;269:164–169. doi: 10.1126/science.7618077. PubMed DOI

Peto J. Cancer epidemiology in the last century and the next decade. Nature. 2001;411:390–395. doi: 10.1038/35077256. PubMed DOI

McCullough L.E., Maliniak M.L., Amin A.B., Baker J.M., Baliashvili D., Barberio J., Barrera C.M., Brown C.A., Collin L.J., Freedman A.A., et al. Epidemiology beyond its limits. Sci. Adv. 2022;8:eabn3328. doi: 10.1126/sciadv.abn3328. PubMed DOI PMC

Brennan P., Davey-Smith G. Identifying Novel Causes of Cancers to Enhance Cancer Prevention: New Strategies Are Needed. J. Natl. Cancer Inst. 2022;114:353–360. doi: 10.1093/jnci/djab204. PubMed DOI PMC

Ogino S., Nowak J.A., Hamada T., Milner D.A., Jr., Nishihara R. Insights into Pathogenic Interactions Among Environment, Host, and Tumor at the Crossroads of Molecular Pathology and Epidemiology. Annu. Rev. Pathol. 2019;14:83–103. doi: 10.1146/annurev-pathmechdis-012418-012818. PubMed DOI PMC

Bray F., Colombet M., Mery L., Piñeros M., Znaor A., R Z., Ferlay J e. XI. International Agency for Research on Cancer; Lyon: 2017. (Cancer Incidence in Five Continents). (electronic version)

Bray F., Colombet M., Mery L., Piñeros M., Znaor A., Zanetti R., Ferlay J. XI. International Agency for Research on Cancer; Lyon: 2017. http://ci5.iarc.fr (Cancer Incidence in Five Continents). (electronic version) Available from: accessed on 22 March 2018.

Arnold M., Pandeya N., Byrnes G., Renehan P.A.G., Stevens G.A., Ezzati P.M., Ferlay J., Miranda J.J., Romieu I., Dikshit R., et al. Global burden of cancer attributable to high body-mass index in 2012: a population-based study. Lancet Oncol. 2015;16:36–46. doi: 10.1016/S1470-2045(14)71123-4. PubMed DOI PMC

Bouvard V., Loomis D., Guyton K.Z., Grosse Y., Ghissassi F.E., Benbrahim-Tallaa L., Guha N., Mattock H., Straif K., International Agency for Research on Cancer Monograph Working Group Carcinogenicity of consumption of red and processed meat. Lancet Oncol. 2015;16:1599–1600. doi: 10.1016/S1470-2045(15)00444-1. PubMed DOI

Rumgay H., Shield K., Charvat H., Ferrari P., Sornpaisarn B., Obot I., Islami F., Lemmens V.E.P.P., Rehm J., Soerjomataram I. Global burden of cancer in 2020 attributable to alcohol consumption: a population-based study. Lancet Oncol. 2021;22:1071–1080. doi: 10.1016/S1470-2045(21)00279-5. PubMed DOI PMC

IARC Monographs Vol 130 group Carcinogenicity of 1,1,1-trichloroethane and four other industrial chemicals. Lancet Oncol. 2021;22:1661–1662. doi: 10.1016/S1470-2045(21)00659-8. PubMed DOI

Das S., Thakur S., Korenjak M., Sidorenko V.S., Chung F.F.L., Zavadil J. Aristolochic acid-associated cancers: a public health risk in need of global action. Nat. Rev. Cancer. 2022;22:576–591. doi: 10.1038/s41568-022-00494-x. PubMed DOI

Grosse Y., Baan R., Straif K., Secretan B., El Ghissassi F., Bouvard V., Benbrahim-Tallaa L., Guha N., Galichet L., Cogliano V., WHO International Agency for Research on Cancer Monograph Working Group A review of human carcinogens--Part A: pharmaceuticals. Lancet Oncol. 2009;10:13–14. doi: 10.1016/s1470-2045(08)70286-9. PubMed DOI

Scelo G., Riazalhosseini Y., Greger L., Letourneau L., Gonzàlez-Porta M., Wozniak M.B., Bourgey M., Harnden P., Egevad L., Jackson S.M., et al. Variation in genomic landscape of clear cell renal cell carcinoma across Europe. Nat. Commun. 2014;5:5135. doi: 10.1038/ncomms6135. PubMed DOI

Shearer J.J., Callahan C.L., Calafat A.M., Huang W.Y., Jones R.R., Sabbisetti V.S., Freedman N.D., Sampson J.N., Silverman D.T., Purdue M.P., Hofmann J.N. Serum Concentrations of Per- and Polyfluoroalkyl Substances and Risk of Renal Cell Carcinoma. J. Natl. Cancer Inst. 2021;113:580–587. doi: 10.1093/jnci/djaa143. PubMed DOI PMC

Alcala K., Mariosa D., Smith-Byrne K., Nasrollahzadeh Nesheli D., Carreras-Torres R., Ardanaz Aicua E., Bondonno N.P., Bonet C., Brunström M., Bueno-de-Mesquita B., et al. The relationship between blood pressure and risk of renal cell carcinoma. Int. J. Epidemiol. 2022;51:1317–1327. doi: 10.1093/ije/dyac042. PubMed DOI PMC

Weikert S., Boeing H., Pischon T., Weikert C., Olsen A., Tjonneland A., Overvad K., Becker N., Linseisen J., Trichopoulou A., et al. Blood pressure and risk of renal cell carcinoma in the European prospective investigation into cancer and nutrition. Am. J. Epidemiol. 2008;167:438–446. doi: 10.1093/aje/kwm321. PubMed DOI

Ben Q., Xu M., Ning X., Liu J., Hong S., Huang W., Zhang H., Li Z. Diabetes mellitus and risk of pancreatic cancer: A meta-analysis of cohort studies. Eur. J. Cancer. 2011;47:1928–1937. doi: 10.1016/j.ejca.2011.03.003. PubMed DOI

Ke L. Mortality and incidence trends from esophagus cancer in selected geographic areas of China circa 1970-90. Int. J. Cancer. 2002;102:271–274. doi: 10.1002/ijc.10706. PubMed DOI

Abnet C.C., Arnold M., Wei W.Q. Epidemiology of Esophageal Squamous Cell Carcinoma. Gastroenterology. 2018;154:360–373. doi: 10.1053/j.gastro.2017.08.023. PubMed DOI PMC

Sheikh M., Poustchi H., Pourshams A., Etemadi A., Islami F., Khoshnia M., Gharavi A., Hashemian M., Roshandel G., Khademi H., et al. Individual and Combined Effects of Environmental Risk Factors for Esophageal Cancer Based on Results From the Golestan Cohort Study. Gastroenterology. 2019;156:1416–1427. doi: 10.1053/j.gastro.2018.12.024. PubMed DOI PMC

Mwachiro M.M., Pritchett N., Calafat A.M., Parker R.K., Lando J.O., Murphy G., Chepkwony R., Burgert S.L., Abnet C.C., Topazian M.D., et al. Indoor wood combustion, carcinogenic exposure and esophageal cancer in southwest Kenya. Environ. Int. 2021;152 doi: 10.1016/j.envint.2021.106485. PubMed DOI PMC

Li M., Park J.Y., Sheikh M., Kayamba V., Rumgay H., Jenab M., Narh C.T., Abedi-Ardekani B., Morgan E., de Martel C., et al. Population-based investigation of common and deviating patterns of gastric cancer and oesophageal cancer incidence across populations and time. Gut. 2023;72:846–854. doi: 10.1136/gutjnl-2022-328233. PubMed DOI

Ryan A.M., Duong M., Healy L., Ryan S.A., Parekh N., Reynolds J.V., Power D.G. Obesity, metabolic syndrome and esophageal adenocarcinoma: epidemiology, etiology and new targets. Cancer Epidemiol. 2011;35:309–319. doi: 10.1016/j.canep.2011.03.001. PubMed DOI

Macfarlane T.V., Macfarlane G.J., Oliver R.J., Benhamou S., Bouchardy C., Ahrens W., Pohlabeln H., Lagiou P., Lagiou A., Castellsague X., et al. The aetiology of upper aerodigestive tract cancers among young adults in Europe: the ARCAGE study. Cancer Causes Control. 2010;21:2213–2221. doi: 10.1007/s10552-010-9641-3. PubMed DOI

Abrahão R., Perdomo S., Pinto L.F.R., Nascimento de Carvalho F., Dias F.L., de Podestá J.R.V., Ventorin von Zeidler S., Marinho de Abreu P., Vilensky M., Giglio R.E., et al. Predictors of Survival After Head and Neck Squamous Cell Carcinoma in South America: The InterCHANGE Study. JCO Glob. Oncol. 2020;6:486–499. doi: 10.1200/GO.20.00014. PubMed DOI PMC

Hadji M., Rashidian H., Marzban M., Naghibzadeh-Tahami A., Gholipour M., Mohebbi E., Safari-Faramani R., Seyyedsalehi M.S., Hosseini B., Bakhshi M., et al. Opium use and risk of bladder cancer: a multi-centre case-referent study in Iran. Int. J. Epidemiol. 2022;51:830–838. doi: 10.1093/ije/dyac031. PubMed DOI PMC

IARC Monographs Vol 126 group Carcinogenicity of opium consumption. Lancet Oncol. 2020;21:1407–1408. doi: 10.1016/S1470-2045(20)30611-2. PubMed DOI

Matsuda T., Marugame T. International comparisons of cumulative risk of gallbladder cancer and other biliary tract cancer, from Cancer Incidence in Five Continents Vol. VIII. Jpn. J. Clin. Oncol. 2007;37:74–75. doi: 10.1093/jjco/hyl158. PubMed DOI

Maurice J. IARC celebrates 50 years of cancer research. Lancet. 2016;387:2367–2368. doi: 10.1016/S0140-6736(16)30784-X. PubMed DOI

Harris P.A., Taylor R., Thielke R., Payne J., Gonzalez N., Conde J.G. Research electronic data capture (REDCap)--a metadata-driven methodology and workflow process for providing translational research informatics support. J. Biomed. Inform. 2009;42:377–381. doi: 10.1016/j.jbi.2008.08.010. PubMed DOI PMC

Moody S., Senkin S., Islam S.M.A., Wang J., Nasrollahzadeh D., Cortez Cardoso Penha R., Fitzgerald S., Bergstrom E.N., Atkins J., He Y., et al. Mutational signatures in esophageal squamous cell carcinoma from eight countries with varying incidence. Nat. Genet. 2021;53:1553–1563. doi: 10.1038/s41588-021-00928-6. PubMed DOI

Senkin S., Moody S., Díaz-Gay M., Abedi-Ardekani B., Cattiaux T., Ferreiro-Iglesias A., Wang J., Fitzgerald S., Kazachkova M., Vangara R., et al. Geographic variation of mutagenic exposures in kidney cancer genomes. medRxiv. 2023;888 doi: 10.1101/2023.06.20.23291538. Preprint at. PubMed DOI PMC

Alexander D.H., Novembre J., Lange K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 2009;19:1655–1664. doi: 10.1101/gr.094052.109. PubMed DOI PMC

International Cancer Genome Consortium, ICGC ARGO 2022. http://platform.icgc-argo.org/

Koh G., Degasperi A., Zou X., Momen S., Nik-Zainal S. Mutational signatures: emerging concepts, caveats and clinical applications. Nat. Rev. Cancer. 2021;21:619–637. doi: 10.1038/s41568-021-00377-7. PubMed DOI

Mustjoki S., Young N.S. Somatic Mutations in "Benign" Disease. N. Engl. J. Med. 2021;384:2039–2052. doi: 10.1056/NEJMra2101920. PubMed DOI

Balmain A. The critical roles of somatic mutations and environmental tumor-promoting agents in cancer risk. Nat. Genet. 2020;52:1139–1143. doi: 10.1038/s41588-020-00727-5. PubMed DOI PMC

Kakiuchi N., Ogawa S. Clonal expansion in non-cancer tissues. Nat. Rev. Cancer. 2021;21:239–256. doi: 10.1038/s41568-021-00335-3. PubMed DOI

Wijewardhane N., Dressler L., Ciccarelli F.D. Normal Somatic Mutations in Cancer Transformation. Cancer Cell. 2021;39:125–129. doi: 10.1016/j.ccell.2020.11.002. PubMed DOI

Colom B., Herms A., Hall M.W.J., Dentro S.C., King C., Sood R.K., Alcolea M.P., Piedrafita G., Fernandez-Antoran D., Ong S.H., et al. Mutant clones in normal epithelium outcompete and eliminate emerging tumours. Nature. 2021;598:510–514. doi: 10.1038/s41586-021-03965-7. PubMed DOI PMC

Zhang Y., Vaccarella S., Morgan E., Li M., Etxeberria J., Chokunonga E., Manraj S.S., Kamate B., Omonisi A., Bray F. Global variations in lung cancer incidence by histological subtype in 2020: a population-based study. Lancet Oncol. 2023;24:1206–1218. doi: 10.1016/S1470-2045(23)00444-8. PubMed DOI

Hill W., Lim E.L., Weeden C.E., Lee C., Augustine M., Chen K., Kuan F.-C., Marongiu F., Evans E.J., Moore D.A., et al. Lung adenocarcinoma promotion by air pollutants. Nature. 2023;616:159–167. doi: 10.1038/s41586-023-05874-3. PubMed DOI PMC

Goniewicz M.L., Smith D.M., Edwards K.C., Blount B.C., Caldwell K.L., Feng J., Wang L., Christensen C., Ambrose B., Borek N., et al. Comparison of Nicotine and Toxicant Exposure in Users of Electronic Cigarettes and Combustible Cigarettes. JAMA Netw. Open. 2018;1 doi: 10.1001/jamanetworkopen.2018.5937. PubMed DOI PMC

Sheikh M., Brennan P., Mariosa D., Robbins H.A. Opioid medications: an emerging cancer risk factor? Br. J. Anaesth. 2023;130:e401–e403. doi: 10.1016/j.bja.2022.12.007. PubMed DOI

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