A revised genus-level classification for Cerrenaceae (Polyporales, Agaricomycetes)

. 2023 Nov ; 12 () : 271-322. [epub] 20231129

Status PubMed-not-MEDLINE Jazyk angličtina Země Nizozemsko Médium print-electronic

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid38455955

Cerrenaceae is a small family of polypores and hydnoid fungi in the order Polyporales (Basidiomycota). The family consists of white-rot fungi, some of which are serious tree pathogens. Combining morphological evidence with a phylogenetic dataset of six genetic markers, we revise generic concepts in the family and propose a seven-genus classification system for the family. Two genera are introduced as new: the monotypic Acanthodontia for Radulodon cirrhatinus, and Lividopora for the Rigidoporus vinctus complex. We re-introduce the name Somion for the Spongipellis delectans complex. Other recognized genera in the family are Cerrena, Irpiciporus, Pseudolagarobasidium, and Radulodon. New species introduced are Irpiciporus branchiformis from Tanzania, Lividopora armeniaca, and L. facilis from Southeast Asia, and Somion strenuum from East Asia. We provide nomenclatural comments on all the names combined to the above Cerrenaceae genera and typify Cerrena unicolor, C. zonata, Polyporus carneopallens (= L. vincta), Somion occarium, and S. unicolor. The genus Hyphoradulum belongs to Cystostereaceae (Agaricales), and we transfer the type species H. conspicuum to Crustomyces. Our study highlights the importance of integrating different basidiocarp types in analyses when revising genus classification in macrofungi. Citation: Miettinen O, Vlasák J, Larsson E, Vlasák J Jr., Seelan JSS, Hernawati, Levicky Q, Larsson K-H, Spirin V (2023). A revised genus-level classification for Cerrenaceae (Polyporales, Agaricomycetes). Fungal Systematics and Evolution 12: 271-322. doi: 10.3114/fuse.2023.12.14.

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Abarenkov K, Tedersoo L, Nilsson RH.et al. (2010). PlutoF – a web based workbench for ecological and taxonomic research, with an online implementation for fungal ITS sequences. Evolutionary Bioinformatics 6: EBO.S6271.

Adanson M.(1763). Familles des plantes. Vincent, Paris.

Altschul SF, Madden TL, Schäffer AA.et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 3389–3402. PubMed PMC

Batsch AJGK.(1783). Elenchus fungorum. Halle.

Berkeley MJ.(1854). Decades of fungi. Decades XLIV–XLVI. Indian fungi. Hooker’s Journal of Botany and Kew Garden Miscellany 6: 161–174.

Bernicchia A.(2005). Polyporaceae s.l., vol 10. Fungi Europaei. Candusso, Alassio.

Bondartsev AS.(1953). Trutovye griby evropeiskoi chasti SSSR i Kavkaza. Academy of the Sciences of the USSR, Moscow-Leningrad.

Bulliard P.(1789). Herbier de la France, vol 9. Bulliard, Paris.

Černý A.(1979). BBělochoroš bukový - Sponipellis delectans (Peck) Murr. - nový choroš pro ČSSR. Česká Mykologie 33: 99–105.

Chen C-C, Chen C-Y, Wu S-H.(2021). Species diversity, taxonomy and multi-gene phylogeny of phlebioid clade (Phanerochaetaceae, Irpicaceae, Meruliaceae) of Polyporales. Fungal Diversity 111: 337–442.

Corner EJH.(1987). Ad Polyporaceas IV. Beihefte zur Nova Hedwigia 86: 1–276.

Corner EJH.(1989). Ad Polyporaceas V. Beihefte zur Nova Hedwigia 96: 1–218.

Dai Y-C, Cui B-K, Yuan H-S.et al. (2007). Pathogenic wood-decaying fungi in China. Forest Pathology 37: 105–120.

Dai Y-C, Niemelä T.(1997). Changbai wood-rotting fungi 6. study on Antrodiella, two new species and notes on some other species. Mycotaxon 64: 67–81.

Darriba D, Posada D, Kozlov AM.et al. (2020). ModelTest-NG: A new and scalable tool for the selection of DNA and protein evolutionary models. Molecular Biology and Evolution 37: 291–294. PubMed PMC

David A.(1969). Caractères culturaux et cytologiques d’espèces du genre Spongipellis Pat. et affines. Bulletin Mensuel de la Société Linnéenne de Lyon 38: 191–201.

Donk MA.(1960). The generic names proposed for Polyporaceae. Persoonia 1: 173–302.

Donk MA.(1974). Check-list of European polypores. North-Holland Pub. Comp., Amsterdam.

Dvořák D, Běťák J, Tomšovský M.(2014). Aurantiporus alborubescens (Basidiomycota, Polyporales) – first record in the Carpathians and notes on its systematic position. Czech Mycology 66: 71–84.

Elisashvili V, Kachlishvili E, Khardziani T.et al. (2010). Effect of aromatic compounds on the production of laccase and manganese peroxidase by white-rot basidiomycetes. Journal of Industrial Microbiology & Biotechnology 37: 1091–1096. PubMed

Eriksson J, Hjortstam K, Ryvarden L.(1981). The Corticiaceae of North Europe 6. Phlebia-Sarcodontia. Fungiflora, Oslo.

Fries EM.(1821). Systema mycologicum 1. Ex officina Berlingiana, Lund.

Fries EM.(1828). Elenchus fungorum. Sumptibus E. Mauritii.

Fries EM.(1836–1838). Epicrisis systematis mycologici. Typographia Academica, Uppsala.

Garbelotto MM, Lee HK, Slaughter G.et al. (1997). Heterokaryosis is not required for virulence of Heterobasidion annosum. Mycologia 89: 92–102.

Gilbertson RL, Ryvarden L.(1986). North American Polypores Vol. 1. Abortiporus to Lindtneria. Fungiflora, Oslo.

Gilbertson RL, Ryvarden L.(1987). North American Polypores Vol. 2. Megasporoporia to Wrightoporia. Fungiflora, Oslo.

Gray SF.(1821). Natural arrangement of British plants, vol 1. Baldwin, Cradock and Joy, London.

Grigoriev IV, Nikitin R, Haridas S.et al. (2013). MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Research 42: D699–D704. PubMed PMC

Gutaker RM, Reiter E, Furtwängler A.et al. (2017). Extraction of ultrashort DNA molecules from herbarium specimens. Biotechniques 62: 76–79. PubMed

Hallenberg N, Ryberg M, Nilsson RH.et al. (2008). Pseudolagarobasidium (Basidiomycota): on the reinstatement of a genus of parasitic, saprophytic, and endophytic resupinate fungi. Botany 86: 1319–1325.

Hartikainen ES, Miettinen O, Hatakka A.et al. (2016). Decolorization of six synthetic dyes by fungi. American Journal of Environmental Sciences 12: 77–85.

Hattori T.(2001). Type studies of the polypores described by E.J.H. Corner from Asia and West Pacific Areas II. Species described in Gloeophyllum, Heteroporus, Microporellus, Oxyporus, Paratrichaptum, and Rigidoporus. Mycoscience 42: 19–28.

Hattori T.(2002). Type studies of the polypores described by E.J.H. Corner from Asia and West Pacific Areas. IV. Species described in Tyromyces (1). Mycoscience 43: 307–315.

Hattori T.(2003). Type studies of the polypores described by E.J.H. Corner from Asia and West Pacific Areas. VI. Species described in Tyromyces (3), Cristelloporia, Grifola, Hapalopilus, Heterobasidion, Ischnoderma, Loweporus, and Stecchericium. Mycoscience 44: 453–463.

Hibbett DS, Binder M, Bischoff JF.et al. (2007). A higher-level phylogenetic classification of the Fungi. Mycological Research 111: 509–547. PubMed

Hjortstam K.(1987). A check-list of genera and species of corticioid fungi (Hymenomycetes). Windahlia 17: 55–85.

Hjortstam K, Larsson K-H.(1995). Annotated check-list to genera and species of corticioid fungi (Aphyllophorales, Basidiomycotina ) with special regards to tropical and subtropical areas. Windahlia 21: 1–75.

Hood IA, Dick M.(1988). Junghuhnia vincta (Berkeley) comb. nov., root pathogen of Pinus radiata. New Zealand Journal of Botany 26: 113–116.

Hooker JD.(1854). Himalayan journals; or, Notes of a naturalist in Bengal, the Sikkim and Nepal Himalayas, the Khasia Mountains, vol 1. J. Murray, London.

Ipulet P, Ryvarden L.(2005). New and interesting polypores from Uganda. Synopsis Fungorum 20: 87–99.

Jang JC, Chen T.(1985). Pseudolagarobasidium leguminicola gen. et sp. nov. on Leucaena in Taiwan. Transactions of the British Mycological Society 85: 374–377.

Janusz G, Mazur A, Wielbo J.et al. (2018). Comparative transcriptomic analysis of Cerrena unicolor revealed differential expression of genes engaged in degradation of various kinds of wood. Microbiological Research 207: 256–268. PubMed

Janusz G, Rogalski J, Szczodrak J.(2007). Increased production of laccase by Cerrena unicolor in submerged liquid cultures. World Journal of Microbiology and Biotechnology 23: 1459–1464.

Justo A, Hibbett D.(2011). Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Taxon 60: 1567–1583.

Justo A, Miettinen O, Floudas D.et al. (2017). A revised family-level classification of the Polyporales (Basidiomycota). Fungal Biology 121: 798–824. PubMed

Katoh K, Rozewicki J, Yamada KD.(2017). MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20: 1160–1166. PubMed PMC

Kaur G, Singh AP, Dhingra GS.(2014). Radulodon acaciae sp. nov. from India. Mycotaxon 127: 111–113.

Kotiranta H, Kulju M, Miettinen O.(2017). Caudicicola gracilis (Polyporales, Basidiomycota), a new polypore species and genus from Finland. Annales Botanici Fennici 54: 159–167.

Kotlaba F, Pouzar Z.(1957). Nové nebo málo známé choroše pro Československo. Česká Mykologie 9: 214–224.

Kotlaba F, Pouzar Z.(1965). Spongipellis litschaueri Lohwag a Tyromyces kmetii (Bres.) Bond. et Sing., dva vzácné bělochoroše v Československu (Spongipellis litschaueri Lohwag and Tyromyces kmetii (Bres.) Bond. et Sing., two rare polypores in Czechoslovakia). Česká Mykologie 19: 69–78.

Kozlov AM, Darriba D, Flouri T.et al. (2019). RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics 35: 4453–4455. PubMed PMC

Kretzer AM, Bruns TD.(1999). Use of atp6 in fungal phylogenetics: an example from the Boletales. Molecular Phylogenetics and Evolution 13: 483–492. PubMed

Kumar S, Stecher G, Tamura K.(2016). MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for bigger datasets. Molecular Biology and Evolution 33: 1870–1874. PubMed PMC

Lee SS, Noraini Sikin Y.(1999). Fungi associated with heart rot of Acacia mangium trees in Peninsular Malaysia and East Kalimantan. Journal of Tropical Forest Science 11: 240.

Li Y, Nakasone KK, Chen C-C.et al. (2022). Taxonomy and phylogeny of Cystostereaceae (Agaricales, Basidiomycota): a new genus, five new species, and three new combinations. Journal of Fungi 8: 1229. PubMed PMC

Lisova ZA, Lisov AV, Leontievsky AA.(2010). Two laccase isoforms of the basidiomycete Cerrena unicolor VKMF-3196. Induction, isolation and properties. Journal of Basic Microbiology 50: 72–82. PubMed

Ljubarsky D.(1934). On fungal plant deceases and wood-rotters in the South Ussuri area. Vestnik DVFAN SSSR 9: 75–104. [translated from Russian]

Lowe JL.(1975). Polyporaceae of North America. The genus Tyromyces. Mycotaxon 2: 1–82.

Löytynoja A.(2021). Phylogeny-aware alignment with PRANK and PAGAN. In: Katoh K. (ed) Multiple sequence alignment: methods and protocols. Springer US, New York, NY: 17–37. PubMed

Maas Geesteranus RA.(1974). Studies in the genera Irpex and Steccherinum. Persoonia 7: 443–581.

Maekawa N.(2002). Pseudolagarobasidium calcareum: Japanese records and cultural characteristics. Mycoscience 43: 271–275.

Maekawa N, Hasebe K.(2002). Pseudolagarobasidium calcareum: Japanese records and cultural characteristics. Mycoscience 43: 271–275.

Maekawa N, Sugawara R, Kogi H.et al. (2023). Hypochnicium sensu lato (Polyporales, Basidiomycota) from Japan, with descriptions of a new genus and three new species. Mycoscience 64: 19–34. PubMed PMC

Martin R, Gazis R, Skaltsas D.et al. (2015). Unexpected diversity of basidiomycetous endophytes in sapwood and leaves of Hevea. Mycologia 107: 284–297. PubMed

Matheny PB, Liu YJ, Ammirati JF.et al. (2002). Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales). American Journal of Botany 89: 688–698. PubMed

Micheli PA.(1729). Nova plantarum genera. Florence.

Miettinen O, Larsson E, Sjökvist E.et al. (2012). Comprehensive taxon sampling reveals unaccounted diversity and morphological plasticity in a group of dimitic polypores (Polyporales, Basidiomycota). Cladistics 28: 251–270. PubMed

Miettinen O, Vlasák J, Rivoire B, Spirin V.(2018). Postia caesia complex (Polyporales, Basidiomycota) in temperate Northern Hemisphere. Fungal Systematics and Evolution 1: 101–129. PubMed PMC

Murrill WA.(1903). A historical review of the genera of Polyporaceae. Journal of Mycology 9: 87–102.

Murrill WA.(1905). The Polyporaceae of North America: XII. A synopsis of the white and bright-colored pileate species. Bulletin of the Torrey Botanical Club 32: 469–493.

Murrill WA.(1908). Polyporaceae, Part 2. North American Flora 9: 73–173.

Müller J, Müller K, Quandt D.(2010). PhyDE – Phylogenetic Data Editor, version 0.997. http://phyde.de.

Nakasone K, Ortiz-Santana B.(2022). New species and combinations in the Cerrenaceae (Polyporales, Basidiomycota). Lilloa 59 (Suppl.): 89–113.

Nakasone KK.(2001). Taxonomy of the genus Radulodon. Harvard Papers in Botany 6: 163–177.

Nakasone KK.(2012). Type studies of corticioid Hymenomycetes (Basidiomycota) with aculei – Part II. Czech Mycology 64: 23–42.

Nakasone KK.(2015). Taxonomic studies in Chrysoderma, Corneromyces, Dendrophysellum, Hyphoradulum, and Mycobonia. Mycotaxon 130: 369–397.

Nakasone KK, Lindner DL.(2012). Taxonomy of Pseudolagarobasidium (Polyporales, Basidiomycota). Fungal Diversity 55: 155–169.

Nakasone KK, Ortiz-Santana B, He S-H.(2021). Taxonomic studies of crust fungi with spines in Radulomyces, Sarcodontia, and the new genus Noblesia. Mycological Progress 20: 1479–1501.

Niemelä T.(2005). Käävät, puiden sienet. Polypores, lignicolous fungi. Norrlinia 13: 1-320

Nikolaeva TL.(1964). Новый и впервые обнарушенные в СССР Виды ежовиковых грибов (сем. Hydnaceae) (Novyy i vpervye obnarushennye v SSSR vidy ezhovikovyh gribov (sem. Hydnaceae)). Novosti Sistematiki Nizshikh Rastenii 1: 168–175.

Nilsson RH, Glöckner FO, Saar I.et al. (2018). The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Research 47: D259–D264. PubMed PMC

Nobles MK.(1948). Studies in forest pathology VI. Identification of cultures of wood-rotting fungi. Canadian Journal of Research C 26: 281–431. PubMed

Nobles MK.(1965). Identification of cultures of wood-inhabiting Hymenomycetes. Canadian Journal of Botany 43: 1097-1139.

Nuñez M, Ryvarden L.(2001). East Asian polypores, volume 2 - Polyporaceae s. lato. Synopsis Fungorum 14: 169–522.

Pažoutová S, Šrůtka P.(2007). Symbiotic relationship between Cerrena unicolor and the horntail Tremex fuscicornis recorded in the Czech Republic. Czech Mycology 59: 83–90.

Persoon CH.(1801). Synopsis methodica fungorum. Göttingen.

Rajchenberg M.(1994). A taxonomic study of the subantarctic Piptoporus (Polyporaceae, Basidiomycetes) I. Nordic Journal of Botany 14: 435–449.

Rehner SA, Buckley E.(2005). A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97: 84–98. PubMed

Rivoire B.(2020). Polypores de France et d’Europe. Mycopolydev, Orliénas.

Ronquist F, Teslenko M, van der Mark P.et al. (2012). MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539–542. PubMed PMC

Ryvarden L.(1972a). Radulodon, a new genus in the Corticiaceae (Basidiomycetes). Canadian Journal of Botany 50: 2073–2076.

Ryvarden L.(1972b). Studies on the Aphyllophorales of the Canary Islands with a note on the genus Perenniporia Murr. Norwegian Journal of Botany 19: 139–144.

Ryvarden L.(1977). Type studies in the Polyporaceae 10. Species described by J. M. Berkeley, either alone or with other authors, from 1844 to 1845. Norwegian Journal of Botany 24: 213–230.

Ryvarden L.(1983). Type studies in the Polyporaceae 14. species described by N. Patouillard, either alone or with other mycologists. Occasional papers of the Farlow Herbarium of Cryptogamic Botany. Harvard University Herbaria, Cambridge, MA.

Ryvarden L.(1984). Type studies in the Polyporaceae 16. Species described by J. M. Berkeley, either alone or with other mycologists from 1856 to 1886. Mycotaxon 20: 329–363.

Ryvarden L.(1988). Type studies in the Polyporaceae. 20. Species described by G. Bresadola. Mycotaxon 33: 303–327.

Ryvarden L.(1991). Genera of polypores. Nomenclature and taxonomy. Synopsis Fungorum 5: 1–363.

Ryvarden L.(1992). On Irpex zonatus. Boletin de la Sociedad Argentina de Botánica 28: 227–231.

Ryvarden L.(2012). Studies in neotropical polypores 33. Cerrena gilbertsonii nov. sp. Synopsis Fungorum 30: 44–45.

Ryvarden L.(2015). Neotropical polypores, part 2. Polyporaceae, Abortiporus-Nigroporus. Synopsis Fungorum 34: 232–443.

Ryvarden L.(2018). Studies in African Aphyllophorales 25. New species from East and Central Africa. Synopsis Fungorum 38: 25–32.

Ryvarden L.(2020a). Aphyllophorales 36 - more new African polypores. Synopsis Fungorum 40: 101–105.

Ryvarden L.(2020b). The genus Irpex - a synopsis. Synopsis Fungorum 41: 33–49.

Ryvarden L, Johansen I.(1980). A preliminary polypore flora of East Africa. Fungiflora, Oslo.

Ryvarden L, Melo I.(2016). Poroid fungi of Europe. vol 37, 2nd revised edition edn. Fungiflora, Oslo.

Savchenko A, Zamora JC, Shirouzu T.et al. (2021). Revisionof Cerinomyces (Dacrymycetes, Basidiomycota) with notes on morphologically and historically related taxa. Studies in Mycology 99: 1–72. PubMed PMC

Sayers EW, Bolton EE, Brister JR.et al. (2022). Database resources of the National Center for Biotechnology Information in 2023. Nucleic Acids Research 51: D29–D38. PubMed PMC

Schiff NM, Goulet H, Smith DR.et al. (2012). Siricidae (Hymenoptera: Symphyta: Siricoidea) of the Western Hemisphere. Canadian Journal of Arthropod Identification 21: 1–305.

Schweinitz LD.(1822). Synopsis fungorum Carolinae Superioris. Schriften der Naturforschenden Gesellschaft zu Leipzig 1: 21–122.

Setliff EC.(1972a). Cultural characteristics of Poria vincta. Mycologia 64: 641–646.

Setliff EC.(1972b). The taxonomy and morphology of Poria vincta. Mycologia 64: 689–701.

Setliff EC, Mesner W.(1971). A root rot disease of forest trees caused by Poria vincta var. cinerea. Plant Disease Reporter 55: 257–260.

Spirin V, Vlasák J, Niemelä T, et al. (2013). What is Antrodia sensu stricto? Mycologia 105: 1555–1576. PubMed

Spirin V, Vlasák J, Niemelä T, Miettin O.(2022). Studies in Spongipellis sensu stricto (Polyporales, Basidiomycota). Lilloa 59 (Suppl.): 341–358.

Stevenson JA, Cash EK.(1936). The new fungus names proposed by C. G. Lloyd. Bulletin of the Lloyd library and museum 35: 1–209.

Stillwell MA.(1964). The fungus associated with woodwasps occurring in beech in New Brunswick. Canadian Journal of Botany 42: 495–496.

Tabata M, Abe Y.(1995). Cerrena unicolor isolated from the mycangia of a horntail, Tremex longicollis, in Kochi Prefecture, Japan. Mycoscience 36: 447–450.

Thiers B.(2023). Index Herbariorum. http://sweetgum.nybg.org/science/ih. Accessed 24 Apr. 2023.

Tomšovský M.(2012). Delimitati of an almost forgotten species Spongipellis litschaueri (Polyporales, Basidiomycota) and its taxonomic positi within the genus. Mycological Progress 11: 415–424.

Viner I, Bortnikov F, Ryvarden L.et al. (2021). On six African species of Lyomyces and Xylodon. Fungal Systematics and Evolution 8: 163–178. PubMed PMC

Wang C-G, Dai Y-C.(2022). Phylogeny and taxonomy of Spongipellis (Polyporales, Basidiomycota) and its micromorphological similar genera. Mycological Progress 21: 73.

Westhuizen GCAvd.(1963). The cultural characters, structure of the fruit body, and type of interfertility of Cerrena unicolor (Bull. ex Fr.) Murr. Canadian Journal of Botany 41: 1487–1499.

Westphalen MC, Motato-Vásquez V.(2022). A new species of Pseudolagarobasidium from Brazil and new insights on Cerrena (Basidiomycota, Cerrenaceae). Phytotaxa 555: 2.

Westphalen MC, Tomsovsky M, Gugliotta AM.et al. (2019). An overview of Antrodiella and related genera of Polyporales from the Neotropics. Mycologia 111: 813–831. PubMed

White TJ, Bruns T, Lee S.et al. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sinisky JJ.et al. (eds) PCR protocols, a guide to method and application. Academic Press, San Diego: 315–322.

Wood AR, Ginns J.(2006). A new dieback disease of Acacia cyclops in South Africa caused by Pseudolagarobasidium acaciicola sp. nov. Canadian Journal of Botany 84: 750–758.

Wu F, Chen J-J, Ji X-H.et al. (2018). Phylogeny and diversity of the morphologically similar polypore genera Rigidoporus, Physisporinus, Oxyporus, and Leucophellinus. Mycologia 109: 749–765. PubMed

Yuan H-S.(2014). Molecular phylogenetic evaluation of Antrodiella and morphologically allied genera in China. Mycological Progress 13: 353–364.

Yuan H-S, Dai Y-C, Steffen K.(2012). Screening and evaluation of white rot fungi to decolourise synthetic dyes, with particular reference to Antrodiella albocinnamomea. Mycology 3: 100–108.

Zhao C-l, Liu S-l, Ren G-j.et al. (2017). Three species of wood-decaying fungi in Polyporales new to China. Mycotaxon 132: 29–42.

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