Nuclear and Mitochondrial Genome Assemblies for the Endangered Wood-Decaying Fungus Somion occarium
Jazyk angličtina Země Anglie, Velká Británie Médium print
Typ dokumentu časopisecké články
Grantová podpora
Biotechnology and Biological Sciences Research Council - United Kingdom
BB/CCG1720/1
UK Research and Innovation
BBS/E/T/000PR9816
BBSRC National Capabilities in Genomics and Single Cell Analysis
BBS/E/T/000PR9814
Technical Genomics and the Core Bioinformatics Groups
Earlham Institute
BBX011089/1
Earlham Institute Strategic Programme
Decode WP2 Genome Enabled Analysis of Diversity to Identify Gene Function
Biosynthetic Pathways
BBS/E/ER/230002B
Variation in Agri/Aquacultural Traits
21-09334J
Czech Science Foundation
Ministry of Education
Youth and Sports of the Czech Republic
CZ.02.01.01/00/22_008/0004597
One Health framework
PubMed
39791427
PubMed Central
PMC11783313
DOI
10.1093/gbe/evaf003
PII: 7951093
Knihovny.cz E-zdroje
- Klíčová slova
- cerrenaceae, polyporales, fungal conservation, saprotroph, white-rot,
- MeSH
- dřevo mikrobiologie MeSH
- fylogeneze * MeSH
- genom fungální * MeSH
- genom mitochondriální * MeSH
- ohrožené druhy MeSH
- Publikační typ
- časopisecké články MeSH
Somion occarium is a wood-decaying bracket fungus belonging to an order known to be rich in useful chemical compounds. Despite its widespread distribution, S. occarium has been assessed as endangered on at least 1 national Red List, presumably due to loss of old-growth forest habitat. Here, we present a near-complete, annotated nuclear genome assembly for S. occarium consisting of 31 Mbp arranged in 11 pseudochromosomes-9 of which are telomere-to-telomere-as well as a complete mitochondrial genome assembly of 112.9 Kbp. We additionally performed phylogenomic analysis and annotated carbohydrate-active enzymes (CAZymes) to compare gene and CAZyme content across closely related species. This genome was sequenced as the representative for Kingdom Fungi in the European Reference Genome Atlas Pilot Project.
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