RAD51 separation of function mutation disables replication fork maintenance but preserves DSB repair
Status PubMed-not-MEDLINE Jazyk angličtina Země Spojené státy americké Médium electronic-ecollection
Typ dokumentu časopisecké články
PubMed
38577109
PubMed Central
PMC10993188
DOI
10.1016/j.isci.2024.109524
PII: S2589-0042(24)00745-4
Knihovny.cz E-zdroje
- Klíčová slova
- Genetics, Molecular biology, Molecular interaction, Properties of biomolecules,
- Publikační typ
- časopisecké články MeSH
Homologous recombination (HR) protects replication forks (RFs) and repairs DNA double-strand breaks (DSBs). Within HR, BRCA2 regulates RAD51 via two interaction regions: the BRC repeats to form filaments on single-stranded DNA and exon 27 (Ex27) to stabilize the filament. Here, we identified a RAD51 S181P mutant that selectively disrupted the RAD51-Ex27 association while maintaining interaction with BRC repeat and proficiently forming filaments capable of DNA binding and strand invasion. Interestingly, RAD51 S181P was defective for RF protection/restart but proficient for DSB repair. Our data suggest that Ex27-mediated stabilization of RAD51 filaments is required for the protection of RFs, while it seems dispensable for the repair of DSBs.
Center for Genomic Integrity Institute for Basic Science Ulsan 44919 Republic of Korea
Department of Biology Masaryk University 625 00 Brno Czech Republic
Department of Genetics Albert Einstein College of Medicine of Yeshiva University Bronx NY 10461 USA
National Centre for Biomolecular Research Masaryk University 625 00 Brno Czech Republic
Zobrazit více v PubMed
Carr A.M., Lambert S. Replication Stress-Induced Genome Instability: The Dark Side of Replication Maintenance by Homologous Recombination. J. Mol. Biol. 2013;425:4733–4744. doi: 10.1016/j.jmb.2013.04.023. PubMed DOI
Kim T.M., Ko J.H., Hu L., Kim S.A., Bishop A.J.R., Vijg J., Montagna C., Hasty P. RAD51 mutants cause replication defects and chromosomal instability. Mol. Cell Biol. 2012;32:3663–3680. doi: 10.1128/MCB.00406-12. PubMed DOI PMC
Mizuno K., Lambert S., Baldacci G., Murray J.M., Carr A.M. Nearby inverted repeats fuse to generate acentric and dicentric palindromic chromosomes by a replication template exchange mechanism. Genes Dev. 2009;23:2876–2886. doi: 10.1101/gad.1863009. PubMed DOI PMC
Mizuno K., Miyabe I., Schalbetter S.A., Carr A.M., Murray J.M. Recombination-restarted replication makes inverted chromosome fusions at inverted repeats. Nature. 2013;493:246–249. doi: 10.1038/nature11676. PubMed DOI PMC
Petermann E., Helleday T. Pathways of mammalian replication fork restart. Nat. Rev. Mol. Cell Biol. 2010;11:683–687. doi: 10.1038/nrm2974. PubMed DOI
Schlacher K., Christ N., Siaud N., Egashira A., Wu H., Jasin M. Double-Strand Break Repair-Independent Role for BRCA2 in Blocking Stalled Replication Fork Degradation by MRE11. Cell. 2011;145:529–542. doi: 10.1016/j.cell.2011.03.041. PubMed DOI PMC
Schlacher K., Wu H., Jasin M. A Distinct Replication Fork Protection Pathway Connects Fanconi Anemia Tumor Suppressors to RAD51-BRCA1/2. Cancer Cell. 2012;22:106–116. doi: 10.1016/j.ccr.2012.05.015. PubMed DOI PMC
Sirbu B.M., Couch F.B., Feigerle J.T., Bhaskara S., Hiebert S.W., Cortez D. Analysis of protein dynamics at active, stalled, and collapsed replication forks. Genes Dev. 2011;25:1320–1327. doi: 10.1101/gad.2053211. PubMed DOI PMC
King M.C., Marks J.H., Mandell J.B., New York Breast Cancer Study Group Breast and ovarian cancer risks due to inherited mutations in BRCA1 and BRCA2. Science. 2003;302:643–646. doi: 10.1126/science.1088759. PubMed DOI
Chen C.F., Chen P.L., Zhong Q., Sharp Z.D., Lee W.H. Expression of BRC repeats in breast cancer cells disrupts the BRCA2- Rad51 complex and leads to radiation hypersensitivity and loss of G(2)/M checkpoint control. J. Biol. Chem. 1999;274:32931–32935. PubMed
Chen P.L., Chen C.F., Chen Y., Xiao J., Sharp Z.D., Lee W.H. The BRC repeats in BRCA2 are critical for RAD51 binding and resistance to methyl methanesulfonate treatment. Proc. Natl. Acad. Sci. USA. 1998;95:5287–5292. PubMed PMC
Morimatsu M., Donoho G., Hasty P. Cells deleted for Brca2 COOH terminus exhibit hypersensitivity to gamma- radiation and premature senescence. Cancer Res. 1998;58:3441–3447. PubMed
Sharan S.K., Morimatsu M., Albrecht U., Lim D.S., Regel E., Dinh C., Sands A., Eichele G., Hasty P., Bradley A. Embryonic lethality and radiation hypersensitivity mediated by Rad51 in mice lacking Brca2. Nature. 1997;386:804–810. see comments. PubMed
Carreira A., Kowalczykowski S.C. Two classes of BRC repeats in BRCA2 promote RAD51 nucleoprotein filament function by distinct mechanisms. Proc. Natl. Acad. Sci. USA. 2011;108:10448–10453. doi: 10.1073/pnas.1106971108. PubMed DOI PMC
Rajendra E., Venkitaraman A.R. Two modules in the BRC repeats of BRCA2 mediate structural and functional interactions with the RAD51 recombinase. Nucleic Acids Res. 2010;38:82–96. doi: 10.1093/nar/gkp873. PubMed DOI PMC
Jensen R.B., Carreira A., Kowalczykowski S.C. Purified human BRCA2 stimulates RAD51-mediated recombination. Nature. 2010;467:678–683. doi: 10.1038/nature09399. PubMed DOI PMC
Liu J., Doty T., Gibson B., Heyer W.D. Human BRCA2 protein promotes RAD51 filament formation on RPA-covered single-stranded DNA. Nat. Struct. Mol. Biol. 2010;17:1260–1262. doi: 10.1038/nsmb.1904. PubMed DOI PMC
San Filippo J., Chi P., Sehorn M.G., Etchin J., Krejci L., Sung P. Recombination mediator and Rad51 targeting activities of a human BRCA2 polypeptide. J. Biol. Chem. 2006;281:11649–11657. PubMed PMC
Shivji M.K.K., Davies O.R., Savill J.M., Bates D.L., Pellegrini L., Venkitaraman A.R. A region of human BRCA2 containing multiple BRC repeats promotes RAD51-mediated strand exchange. Nucleic Acids Res. 2006;34:4000–4011. doi: 10.1093/nar/gkl505. PubMed DOI PMC
Carreira A., Hilario J., Amitani I., Baskin R.J., Shivji M.K.K., Venkitaraman A.R., Kowalczykowski S.C. The BRC repeats of BRCA2 modulate the DNA-binding selectivity of RAD51. Cell. 2009;136:1032–1043. PubMed PMC
Esashi F., Galkin V.E., Yu X., Egelman E.H., West S.C. Stabilization of RAD51 nucleoprotein filaments by the C-terminal region of BRCA2. Nat. Struct. Mol. Biol. 2007;14:468–474. doi: 10.1038/nsmb1245. PubMed DOI
Davies O.R., Pellegrini L. Interaction with the BRCA2 C terminus protects RAD51-DNA filaments from disassembly by BRC repeats. Nat. Struct. Mol. Biol. 2007;14:475–483. PubMed PMC
Kolinjivadi A.M., Sannino V., De Antoni A., Zadorozhny K., Kilkenny M., Técher H., Baldi G., Shen R., Ciccia A., Pellegrini L., et al. Smarcal1-Mediated Fork Reversal Triggers Mre11-Dependent Degradation of Nascent DNA in the Absence of Brca2 and Stable Rad51 Nucleofilaments. Mol. Cell. 2017;67:867–881.e7. doi: 10.1016/j.molcel.2017.07.001. PubMed DOI PMC
Kim T.M., Son M.Y., Dodds S., Hu L., Hasty P. Deletion of BRCA2 exon 27 causes defects in response to both stalled and collapsed replication forks. Mutat. Res. 2014;766–767:66–72. doi: 10.1016/j.mrfmmm.2014.06.003. PubMed DOI
Donoho G., Brenneman M.A., Cui T.X., Donoviel D., Vogel H., Goodwin E.H., Chen D.J., Hasty P. Deletion of Brca2 exon 27 causes hypersensitivity to DNA crosslinks, chromosomal instability, and reduced life span in mice. Genes Chromosomes Cancer. 2003;36:317–331. PubMed
Krejci L., Damborsky J., Thomsen B., Duno M., Bendixen C. Molecular dissection of interactions between Rad51 and members of the recombination-repair group. Mol. Cell Biol. 2001;21:966–976. PubMed PMC
Stark J.M., Hu P., Pierce A.J., Moynahan M.E., Ellis N., Jasin M. ATP hydrolysis by mammalian RAD51 has a key role during homology-directed DNA repair. J. Biol. Chem. 2002;277:20185–20194. PubMed
Antony E., Tomko E.J., Xiao Q., Krejci L., Lohman T.M., Ellenberger T. Srs2 disassembles Rad51 filaments by a protein-protein interaction triggering ATP turnover and dissociation of Rad51 from DNA. Mol. Cell. 2009;35:105–115. doi: 10.1016/j.molcel.2009.05.026. PubMed DOI PMC
Špírek M., Mlcoušková J., Belán O., Gyimesi M., Harami G.M., Molnár E., Novacek J., Kovács M., Krejci L. Human RAD51 rapidly forms intrinsically dynamic nucleoprotein filaments modulated by nucleotide binding state. Nucleic Acids Res. 2018;46:3967–3980. doi: 10.1093/nar/gky111. PubMed DOI PMC
Xue C., Molnarova L., Steinfeld J.B., Zhao W., Ma C., Spirek M., Kaniecki K., Kwon Y., Beláň O., Krejci K., et al. Single-molecule visualization of human RECQ5 interactions with single-stranded DNA recombination intermediates. Nucleic Acids Res. 2021;49:285–305. doi: 10.1093/nar/gkaa1184. PubMed DOI PMC
Ko J.H., Son M.Y., Zhou Q., Molnarova L., Song L., Mlcouskova J., Jekabsons A., Montagna C., Krejci L., Hasty P. TREX2 Exonuclease Causes Spontaneous Mutations and Stress-Induced Replication Fork Defects in Cells Expressing RAD51(K133A) Cell Rep. 2020;33 doi: 10.1016/j.celrep.2020.108543. PubMed DOI PMC
Holcomb V.B., Vogel H., Hasty P. Deletion of Ku80 causes early aging independent of chronic inflammation and Rag-1-induced DSBs. Mech. Ageing Dev. 2007;128:601–608. doi: 10.1016/j.mad.2007.08.006. PubMed DOI PMC
Reid L.H., Gregg R.G., Smithies O., Koller B.H. Regulatory elements in the introns of the human HPRT gene are necessary for its expression in embryonic stem cells. Proc. Natl. Acad. Sci. USA. 1990;87:4299–4303. PubMed PMC
Li T.K., Liu L.F. Tumor cell death induced by topoisomerase-targeting drugs. Annu. Rev. Pharmacol. Toxicol. 2001;41:53–77. PubMed
Paviolo N.S., Vega M.B.D.L., Pansa M.F., García I.A., Calzetta N.L., Soria G., Gottifredi V. Persistent double strand break accumulation does not precede cell death in an Olaparib-sensitive BRCA-deficient colorectal cancer cell model. Genet. Mol. Biol. 2019;43 doi: 10.1590/1678-4685-GMB-2019-0070. PubMed DOI PMC
Friedberg E.C., Walker G.C., Siede W. American Society of Microbiology; 1995. DNA Repair and Mutagenesis.
Marple T., Li H., Hasty P. A genotoxic screen: rapid analysis of cellular dose-response to a wide range of agents that either damage DNA or alter genome maintenance pathways. Mutat. Res. 2004;554:253–266. PubMed
Bennardo N., Cheng A., Huang N., Stark J.M. Alternative-NHEJ is a mechanistically distinct pathway of mammalian chromosome break repair. PLoS Genet. 2008;4 PubMed PMC
Bennardo N., Gunn A., Cheng A., Hasty P., Stark J.M. Limiting the persistence of a chromosome break diminishes its mutagenic potential. PLoS Genet. 2009;5 doi: 10.1371/journal.pgen.1000683. PubMed DOI PMC
Petermann E., Woodcock M., Helleday T. Chk1 promotes replication fork progression by controlling replication initiation. Proc. Natl. Acad. Sci. USA. 2010;107:16090–16095. doi: 10.1073/pnas.1005031107. PubMed DOI PMC
Olivieri M., Cho T., Álvarez-Quilón A., Li K., Schellenberg M.J., Zimmermann M., Hustedt N., Rossi S.E., Adam S., Melo H., et al. A Genetic Map of the Response to DNA Damage in Human Cells. Cell. 2020;182:481–496.e21. doi: 10.1016/j.cell.2020.05.040. PubMed DOI PMC
Petermann E., Orta M.L., Issaeva N., Schultz N., Helleday T. Hydroxyurea-stalled replication forks become progressively inactivated and require two different RAD51-mediated pathways for restart and repair. Mol. Cell. 2010;37:492–502. doi: 10.1016/j.molcel.2010.01.021. PubMed DOI PMC
Liu W., Saito Y., Jackson J., Bhowmick R., Kanemaki M.T., Vindigni A., Cortez D. RAD51 bypasses the CMG helicase to promote replication fork reversal. Science. 2023;380:382–387. doi: 10.1126/science.add7328. PubMed DOI PMC
Guenatri M., Bailly D., Maison C., Almouzni G. Mouse centric and pericentric satellite repeats form distinct functional heterochromatin. J. Cell Biol. 2004;166:493–505. PubMed PMC
Hande M.P., Samper E., Lansdorp P., Blasco M.A. Telomere length dynamics and chromosomal instability in cells derived from telomerase null mice. J. Cell Biol. 1999;144:589–601. PubMed PMC
Wang W. Emergence of a DNA-damage response network consisting of Fanconi anaemia and BRCA proteins. Nat. Rev. Genet. 2007;8:735–748. PubMed
Appleby R., Joudeh L., Cobbett K., Pellegrini L. Structural basis for stabilisation of the RAD51 nucleoprotein filament by BRCA2. Nat. Commun. 2023;14:7003. doi: 10.1038/s41467-023-42830-1. PubMed DOI PMC
Moynahan M.E., Pierce A.J., Jasin M. BRCA2 Is Required for Homology-Directed Repair of Chromosomal Breaks. Mol. Cell. 2001;7:263–272. PubMed
Mason J.M., Chan Y.L., Weichselbaum R.W., Bishop D.K. Non-enzymatic roles of human RAD51 at stalled replication forks. Nat. Commun. 2019;10:4410. doi: 10.1038/s41467-019-12297-0. PubMed DOI PMC
Wang A.T., Kim T., Wagner J.E., Conti B.A., Lach F.P., Huang A.L., Molina H., Sanborn E.M., Zierhut H., Cornes B.K., et al. A Dominant Mutation in Human RAD51 Reveals Its Function in DNA Interstrand Crosslink Repair Independent of Homologous Recombination. Mol. Cell. 2015;59:478–490. doi: 10.1016/j.molcel.2015.07.009. PubMed DOI PMC
Zadorozhny K., Sannino V., Beláň O., Mlčoušková J., Špírek M., Costanzo V., Krejčí L. Fanconi-Anemia-Associated Mutations Destabilize RAD51 Filaments and Impair Replication Fork Protection. Cell Rep. 2017;21:333–340. doi: 10.1016/j.celrep.2017.09.062. PubMed DOI
Yilmaz D., Furst A., Meaburn K., Lezaja A., Wen Y., Altmeyer M., Reina-San-Martin B., Soutoglou E. Activation of homologous recombination in G1 preserves centromeric integrity. Nature. 2021;600:748–753. doi: 10.1038/s41586-021-04200-z. PubMed DOI
Thacker J. The RAD51 gene family, genetic instability and cancer. Cancer Lett. 2005;219:125–135. PubMed
Hu L., Kim T.M., Son M.Y., Kim S.A., Holland C.L., Tateishi S., Kim D.H., Yew P.R., Montagna C., Dumitrache L.C., Hasty P. Two replication fork maintenance pathways fuse inverted repeats to rearrange chromosomes. Nature. 2013;501:569–572. doi: 10.1038/nature12500. PubMed DOI PMC
Palmer B.R., Marinus M.G. DNA methylation alters the pattern of spontaneous mutation in Escherichia coli cells (mutD) defective in DNA polymerase III proofreading. Mutat Res. 1991;264:15–23. doi: 10.1016/0165-7992(91)90040-b. PubMed DOI
Gunn A., Stark J.M. I-SceI-based assays to examine distinct repair outcomes of mammalian chromosomal double strand breaks. Methods Mol. Biol. 2012;920:379–391. doi: 10.1007/978-1-61779-998-3_27. PubMed DOI
James P., Halladay J., Craig E.A. Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics. 1996;144:1425–1436. doi: 10.1093/genetics/144.4.1425. PubMed DOI PMC
Kim T.M., Choi Y.J., Ko J.H., Hasty P. High-throughput knock-in coupling gene targeting with the HPRT minigene and Cre-mediated recombination. Genesis. 2008;46:732–737. doi: 10.1002/dvg.20439. PubMed DOI
Concordet J.P., Haeussler M. CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens. Nucleic Acids Res. 2018;46:W242–W245. doi: 10.1093/nar/gky354. PubMed DOI PMC
Hasty P., Rivera-Pérez J., Chang C., Bradley A. Target frequency and integration pattern for insertion and replacement vectors in embryonic stem cells. Mol. Cell Biol. 1991;11:4509–4517. PubMed PMC
Schneider C.A., Rasband W.S., Eliceiri K.W. NIH Image to ImageJ: 25 years of image analysis. Nat. Methods. 2012;9:671–675. doi: 10.1038/nmeth.2089. PubMed DOI PMC
Taylor M.R.G., Špírek M., Jian Ma C., Carzaniga R., Takaki T., Collinson L.M., Greene E.C., Krejci L., Boulton S.J. A Polar and Nucleotide-Dependent Mechanism of Action for RAD51 Paralogs in RAD51 Filament Remodeling. Mol. Cell. 2016;64:926–939. doi: 10.1016/j.molcel.2016.10.020. PubMed DOI PMC