We report a comprehensive toolkit that enables targeted, specific modification of monocot and dicot genomes using a variety of genome engineering approaches. Our reagents, based on transcription activator-like effector nucleases (TALENs) and the clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 system, are systematized for fast, modular cloning and accommodate diverse regulatory sequences to drive reagent expression. Vectors are optimized to create either single or multiple gene knockouts and large chromosomal deletions. Moreover, integration of geminivirus-based vectors enables precise gene editing through homologous recombination. Regulation of transcription is also possible. A Web-based tool streamlines vector selection and construction. One advantage of our platform is the use of the Csy-type (CRISPR system yersinia) ribonuclease 4 (Csy4) and tRNA processing enzymes to simultaneously express multiple guide RNAs (gRNAs). For example, we demonstrate targeted deletions in up to six genes by expressing 12 gRNAs from a single transcript. Csy4 and tRNA expression systems are almost twice as effective in inducing mutations as gRNAs expressed from individual RNA polymerase III promoters. Mutagenesis can be further enhanced 2.5-fold by incorporating the Trex2 exonuclease. Finally, we demonstrate that Cas9 nickases induce gene targeting at frequencies comparable to native Cas9 when they are delivered on geminivirus replicons. The reagents have been successfully validated in tomato (Solanum lycopersicum), tobacco (Nicotiana tabacum), Medicago truncatula, wheat (Triticum aestivum), and barley (Hordeum vulgare).

• MeSH
• genetické inženýrství metody   MeSH
• geneticky modifikované rostliny genetika   MeSH
• ječmen (rod) genetika   MeSH
• pšenice genetika   MeSH
• RNA rostlin genetika   MeSH
• rostlinné proteiny genetika   MeSH
• sekvence CRISPR genetika   MeSH
• Solanum lycopersicum genetika   MeSH
• TALENs genetika   MeSH
• Publikační typ
• časopisecké články MeSH
• Názvy látek
• RNA rostlin MeSH
• rostlinné proteiny MeSH
• TALENs MeSH

The spontaneously hypertensive rat (SHR), one of the most widely used model of essential hypertension, is predisposed to left ventricular hypertrophy, myocardial fibrosis, and metabolic disturbances. Recently, quantitative trait loci influencing blood pressure, left ventricular mass, and heart interstitial fibrosis were genetically isolated within a minimal congenic subline that contains only 7 genes, including mutant Plzf (promyelocytic leukemia zinc finger) candidate gene. To identify Plzf as a quantitative trait gene, we targeted Plzf in the SHR using the transcription activator-like effector nuclease technique and obtained SHR line harboring targeted Plzf gene with a premature stop codon. Because the Plzf targeted allele is semilethal, morphologically normal heterozygous rats were used for metabolic and hemodynamic analyses. SHR-Plzf+/- heterozygotes versus SHR wild-type controls exhibited reduced body weight and relative weight of epididymal fat, lower serum and liver triglycerides and cholesterol, and better glucose tolerance. In addition, SHR-Plzf+/- rats exhibited significantly increased sensitivity of adipose and muscle tissue to insulin action when compared with wild-type controls. Blood pressure was comparable in SHR versus SHR-Plzf+/-; however, there was significant amelioration of cardiomyocyte hypertrophy and cardiac fibrosis in SHR-Plzf+/- rats. Gene expression profiles in the liver and expression of selected genes in the heart revealed differentially expressed genes that play a role in metabolic pathways, PPAR (peroxisome proliferator-activated receptor) signaling, and cell cycle regulation. These results provide evidence for an important role of Plzf in regulation of metabolic and cardiac traits in the rat and suggest a cross talk between cell cycle regulators, metabolism, cardiac hypertrophy, and fibrosis.

• Klíčová slova
• fibrosis, hypertension, hypertrophy, left ventricular, rats, inbred SHR, transcriptome,
• MeSH
• alely MeSH
• analýza rozptylu MeSH
• down regulace MeSH
• esenciální hypertenze MeSH
• fenotyp MeSH
• fibróza genetika   MeSH
• hypertenze genetika   patologie   MeSH
• hypertrofie levé komory srdeční genetika   patofyziologie   MeSH
• kardiomyocyty metabolismus   MeSH
• krysa rodu Rattus MeSH
• kultivované buňky MeSH
• kvantitativní polymerázová řetězová reakce metody   MeSH
• lokus kvantitativního znaku MeSH
• měření krevního tlaku MeSH
• metabolismus lipidů genetika   MeSH
• potkani inbrední SHR MeSH
• protein promyelocytické leukemie s motivem zinkového prstu MeSH
• stanovení celkové genové exprese * MeSH
• transkripční faktory Krüppel-like genetika   MeSH
• western blotting MeSH
• zvířata MeSH
• Check Tag
• krysa rodu Rattus MeSH
• mužské pohlaví MeSH
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• Názvy látek
• protein promyelocytické leukemie s motivem zinkového prstu MeSH
• transkripční faktory Krüppel-like MeSH
• Zbtb16 protein, mouse MeSH Prohlížeč

Recently, it has been found that spontaneous mutation Lx (polydactyly-luxate syndrome) in the rat is determined by deletion of a conserved intronic sequence of the Plzf (Promyelocytic leukemia zinc finger protein) gene. In addition, Plzf is a prominent candidate gene for quantitative trait loci (QTLs) associated with cardiac hypertrophy and fibrosis in the spontaneously hypertensive rat (SHR). In the current study, we tested the effects of Plzf gene targeting in the SHR using TALENs (transcription activator-like effector nucleases). SHR ova were microinjected with constructs pTAL438/439 coding for a sequence-specific endonuclease that binds to target sequence in the first coding exon of the Plzf gene. Out of 43 animals born after microinjection, we detected a single male founder. Sequence analysis revealed a deletion of G that resulted in frame shift mutation starting in codon 31 and causing a premature stop codon at position of amino acid 58. The Plzftm1Ipcv allele is semi-lethal since approximately 95% of newborn homozygous animals died perinatally. All homozygous animals exhibited manifestations of a caudal regression syndrome including tail anomalies and serious size reduction and deformities of long bones, and oligo- or polydactyly on the hindlimbs. The heterozygous animals only exhibited the tail anomalies. Impaired development of the urinary tract was also revealed: one homozygous and one heterozygous rat exhibited a vesico-ureteric reflux with enormous dilatation of ureters and renal pelvis. In the homozygote, this was combined with a hypoplastic kidney. These results provide evidence for the important role of Plzf gene during development of the caudal part of a body-column vertebrae, hindlimbs and urinary system in the rat.

• MeSH
• alely MeSH
• DNA vazebné proteiny nedostatek   genetika   metabolismus   MeSH
• exony MeSH
• genotyp MeSH
• genový targeting MeSH
• heterozygot MeSH
• homozygot MeSH
• krysa rodu Rattus MeSH
• lokus kvantitativního znaku MeSH
• mnohočetné abnormality genetika   patologie   veterinární   MeSH
• ocas abnormality   MeSH
• polydaktylie genetika   patologie   veterinární   MeSH
• posunová mutace MeSH
• potkani inbrední SHR MeSH
• protein promyelocytické leukemie s motivem zinkového prstu MeSH
• sekvence aminokyselin MeSH
• sekvence nukleotidů MeSH
• TALENs genetika   metabolismus   MeSH
• vazba proteinů MeSH
• zvířata MeSH
• Check Tag
• krysa rodu Rattus MeSH
• mužské pohlaví MeSH
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• Názvy látek
• DNA vazebné proteiny MeSH
• protein promyelocytické leukemie s motivem zinkového prstu MeSH
• TALENs MeSH
• ZBTB16 protein, rat MeSH Prohlížeč