Combining genome-wide mapping of SNP-rich regions in schizophrenics and gene expression data in all brain compartments across the human life span revealed that genes with promoters most frequently mutated in schizophrenia are expression hubs interacting with far more genes than the rest of the genome. We summed up the differentially methylated "expression neighbors" of genes that fall into one of 108 distinct schizophrenia-associated loci with high number of SNPs. Surprisingly, the number of expression neighbors of the genes in these loci were 35 times higher for the positively correlating genes (32 times higher for the negatively correlating ones) than for the rest of the ~16000 genes. While the genes in the 108 loci have little known impact in schizophrenia, we identified many more known schizophrenia-related important genes with a high degree of connectedness (e.g. MOBP, SYNGR1 and DGCR6), validating our approach. Both the most connected positive and negative hubs affected synapse-related genes the most, supporting the synaptic origin of schizophrenia. At least half of the top genes in both the correlating and anti-correlating categories are cancer-related, including oncogenes (RRAS and ALDOA), providing further insight into the observed inverse relationship between the two diseases.
- MeSH
- extracelulární matrix - proteiny genetika metabolismus MeSH
- genetické lokusy MeSH
- genové regulační sítě genetika MeSH
- jaderné proteiny MeSH
- jednonukleotidový polymorfismus * MeSH
- lidé MeSH
- metylace DNA MeSH
- mozek metabolismus MeSH
- myelinové proteiny genetika metabolismus MeSH
- promotorové oblasti (genetika) MeSH
- schizofrenie genetika patologie MeSH
- synapse metabolismus MeSH
- synaptogyriny genetika metabolismus MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- DGCR6 protein, human MeSH Prohlížeč
- extracelulární matrix - proteiny MeSH
- jaderné proteiny MeSH
- MOBP protein, human MeSH Prohlížeč
- myelinové proteiny MeSH
- synaptogyriny MeSH
- SYNGR1 protein, human MeSH Prohlížeč
