2,6-Diaminopurine (2,6-dAP) is an alternative nucleobase that potentially played a role in prebiotic chemistry. We studied its excited state dynamics in the gas phase by REMPI, IR-UV hole burning, and ps pump-probe spectroscopy and performed quantum chemical calculations at the SCS-ADC(2) level of theory to interpret the experimental results. We found the 9H tautomer to have a small barrier to ultrafast relaxation via puckering of its 6-membered ring. The 7H tautomer has a larger barrier to reach a conical intersection and also has a sizable triplet yield. These results are discussed relative to other purines, for which 9H tautomerization appears to be more photostable than 7H and homosubstituted purines appear to be less photostable than heterosubstituted or singly substituted purines.

• Klíčová slova
• excited state dynamics, gas phase spectroscopy, prebiotic nucleobases, quantum computations,
• Publikační typ
• časopisecké články MeSH

The alternative nucleobase isocytosine has long been considered as a plausible component of hypothetical primordial informational polymers. To examine this hypothesis we investigated the excited-state dynamics of the two most abundant forms of isocytosine in the gas phase (keto and enol). Our surface-hopping nonadiabatic molecular dynamics simulations employing the algebraic diagrammatic construction to the second order [ADC(2)] method for the electronic structure calculations suggest that both tautomers undergo efficient radiationless deactivation to the electronic ground state with time constants which amount to τketo = 182 fs and τenol = 533 fs. The dominant photorelaxation pathways correspond to ring-puckering (ππ* surface) and C[double bond, length as m-dash]O stretching/N-H tilting (nπ* surface) for the enol and keto forms respectively. Based on these findings, we infer that isocytosine is a relatively photostable compound in the gas phase and in these terms resembles biologically relevant nucleobases. The estimated S1 [radiolysis arrow - arrow with voltage kink] T1 intersystem crossing rate constant of 8.02 × 10(10) s(-1) suggests that triplet states might also play an important role in the overall excited-state dynamics of the keto tautomer. The reliability of ADC(2)-based surface-hopping molecular dynamics simulations was tested against multireference quantum-chemical calculations and the potential limitations of the employed ADC(2) approach are briefly discussed.

• Publikační typ
• časopisecké články MeSH

Incorporation of the trimethoxyphenyl group at position 7 of flavin can drastically change the photophysical properties of flavin. We show unique fast singlet 1(π,π*) excited state deactivation pathway through nonadiabatic transition to the 1(n,π*) excited- state, and subsequent deactivation to the ground electronic state (S0), closing the photocycle. This mechanism explains the exceptionally weak fluorescence and the short excited-state lifetime for the flavin trimethoxyphenyl derivative and the lack of excited triplet T1 state formation. Full recovery of flavin in its ground state takes place within a 15 ps time window after photoexcitation in a polar solvent such as acetonitrile. According to quantum chemical calculations, the C(2)-O distance elongates by 0.16 Å in the 1(n,π*) state, with respect to the ground state. Intermediate-state structures are predicted by theoretical ab initio calculations and their dynamics are investigated using broadband vis-NIR time-resolved transient absorption and fluorescence up-conversion techniques.

• Klíčová slova
• Excited state ab initio calculations, Flavin, Isoalloxazine, Photophysics, Time-resolved spectroscopy,
• Publikační typ
• časopisecké články MeSH

Steady-state and transient absorption spectra with <50 fs time resolution were obtained for two conjugated polymers, both with ≈200 conjugated double bonds (N), constrained in planar, stable, polyene frameworks. Solutions of the polymers exhibit the same S2 → S1 → S* → S0 decay pathway observed for the N = 11-19 polyene oligomers and for zeaxanthin homologues with N = 11-23. Comparisons with the excited state dynamics of polydiactylene and a much longer, more disordered polyene polymer (poly(DEDPM)) show that the S2, S1, and S* lifetimes of the four polymers are almost identical. The S* signals in the polymers are assigned to absorption from vibrationally excited ground states. In spite of significant heterogeneities and variations in conjugation lengths in these long polyenes, their S0 → S2 absorptions are vibronically-resolved in room temperature solutions with electronic origins at ≈600 nm. The limiting wavelength for the S0 → S2 transitions is consistent with the persistence of bond length alternation in the electronic ground states and a HOMO-LUMO band gap in polyenes with N ≈ 200. The coincidence of the well-resolved S0 → S2 electronic origins and the convergence of the excited state lifetimes in the four polymers point to a common, "nearly infinite" polyene limit.

• Publikační typ
• časopisecké články MeSH

Ultrafast transient absorption spectroscopy and single-wavelength anisotropy measurements were used to study the effect of isomerization on the excited-state properties of fucoxanthin in polar and nonpolar solvents. The excitation wavelengths were 477 nm for all-trans-fucoxanthin, and 333 and 477 nm for cis-fucoxanthin. All transient absorption spectra of the fucoxanthin isomers in polar solvents show intramolecular charge transfer (ICT) state features, typical for carbonyl carotenoids. Global analysis of the data requires an additional fitting component, originated from the presence of blue and red forms of fucoxanthin in a polar protic solvent. Here we demonstrate that the ICT state decays faster than the S1 state, due to the significant contribution of the red form to the ICT state dynamics. The isomerization does not affect the S1 lifetime, but induces a larger difference between the S1- and ICT-state lifetimes in cis-fucoxanthin, which is likely caused by alterations of ICT coupling to either the S1 or S0 states; the S*-state signal is more pronounced for cis-isomers in a nonpolar solvent.

• MeSH
• kvantová teorie * MeSH
• molekulární struktura MeSH
• stereoizomerie MeSH
• xanthofyly chemie   MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Názvy látek
• fucoxanthin MeSH Prohlížeč
• xanthofyly MeSH

Photodynamical simulations are increasingly used to explore photochemical mechanisms and interpret laser experiments. The vast majority of ab initio excited-state simulations are performed within semiclassical, trajectory-based approaches. Apart from underlying electronic-structure theory, the reliability of simulations is controlled by a selection of initial conditions for the classical trajectories. We discuss appropriate choices of initial conditions for simulations of different experimental arrangements: dynamics initiated by continuum-wave (CW) laser fields or triggered by ultrashort laser pulses. We introduce a new technique, CW-sampling, to treat the former case, based on the ideas of importance sampling, combined with the quantum thermostat approach based on the Generalized Langevin Equation (GLE) that allows for efficient sampling of both position and momentum space. The CW-sampling is particularly important for photodynamical processes initiated by absorption at the tail of the UV absorption spectrum. We also emphasize the importance of non-Condon effects for the dynamics. We demonstrate the performance of our approach on the photodissociation of the CF2Cl2 molecule (Freon CFC-12). A quantitative agreement with the experimental data is achieved with the use of empirical correlation energy correction (CEC) factor on top of FOMO-CASCI potential energy surfaces.

• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH

Ab initio nonadiabatic dynamics simulations of cis-to-trans isomerization of azobenzene upon S(1) (n-π*) excitation are carried out employing the fewest-switches surface hopping method. Azobenzene photoisomerization occurs purely as a rotational motion of the central CNNC moiety. Two nonequivalent rotational pathways corresponding to clockwise or counterclockwise rotation are available. The course of the rotational motion is strongly dependent on the initial conditions. The internal conversion occurs via an S(0)/S(1) crossing seam located near the midpoint of both of these rotational pathways. Based on statistical analysis, it is shown that the occurrence of one or other pathway can be completely controlled by selecting adequate initial conditions.

• MeSH
• azosloučeniny chemie   MeSH
• fotochemické procesy MeSH
• kvantová teorie MeSH
• molekulární struktura MeSH
• povrchové vlastnosti MeSH
• rotace MeSH
• simulace molekulární dynamiky * MeSH
• stereoizomerie MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Názvy látek
• azobenzene MeSH Prohlížeč
• azosloučeniny MeSH

Excited state dynamics of two apo-carotenals, retinal and 12'-apo-β-carotenal, were studied by femtosecond transient absorption spectroscopy. We make use of previous knowledge gathered from studies of various carbonyl carotenoids and suggest that to consistently explain the excited-state dynamics of retinal in polar solvents, it is necessary to include an intermolecular charge transfer (ICT) state in the excited state manifold. Coupling of the ICT state to the A(g)(-) state, which occurs in polar solvents, shortens lifetime of the lowest excited state of 12'-apo-β-carotenal from 180 ps in n-hexane to 7.1 ps in methanol. Comparison with a reference molecule lacking the conjugated carbonyl group, 12'-apo-β-carotene, demonstrates the importance of the carbonyl group; no polarity-induced lifetime change is observed and 12'-apo-β-carotene decays to the ground state in 220 ps regardless of solvent polarity. For retinal, we have confirmed the well-known three-state relaxation scheme in n-hexane. Population of the B(u)(+) state decays in <100 fs to the A(g)(-) state, which is quenched in 440 fs by a low-lying nπ* state that decays with a 33 ps time constant to form the retinal triplet state. In methanol, however, the A(g)(-) state is coupled to the ICT state. This coupling prevents population of the nπ* state, which explains the absence of retinal triplet formation in polar solvents. Instead, the coupled A(g)(-)/ICT state decays in 1.6 ps to the ground state. The A(g)(-)/ICT coupling is also evidenced by stimulated emission, which is a characteristic marker of the ICT state in carbonyl carotenoids.

• MeSH
• časové faktory MeSH
• hexany chemie   MeSH
• karotenoidy chemie   MeSH
• methanol chemie   MeSH
• retinaldehyd chemie   MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Research Support, U.S. Gov't, Non-P.H.S. MeSH
• Názvy látek
• hexany MeSH
• karotenoidy MeSH
• methanol MeSH
• retinaldehyd MeSH

Excited-state properties of monomeric and aggregated carbonyl carotenoid 8'-apo-β-carotenal were studied by means of femtosecond transient absorption spectroscopy. For monomers, the polarity-dependent behavior characteristic of carotenoids with conjugated carbonyl group was observed. In n-hexane the S(1) lifetime is 25 ps, but it is shortened to 8 ps in methanol. This shortening is accompanied by the appearance of new spectral bands in transient absorption spectrum. On the basis of analysis of the transient absorption spectra of monomeric 8'-apo-β-carotenal in n-hexane and methanol, we propose that the polarity-induced spectral bands are due to the S(1)(A(g)(-))-S(3)(A(g)(+)) transition, which is enhanced upon breaking the symmetry of the molecule. This symmetry breaking is caused by the conjugated carbonyl group; it is much stronger in polar solvents where the S(1) state gains significant charge-transfer character. Upon addition of water to methanol solution of 8'-apo-β-carotenal we observed formation of aggregates characterized by either blue-shifted (H-aggregate) or red-shifted (J-aggregate) absorption spectrum. Both aggregate types exhibit excited-state dynamics significantly different from those of monomeric 8'-apo-β-carotenal. The lifetime of the relaxed S(1) state is 20 and 40 ps for the H- and J-aggregates, respectively. In contrast to monomers, aggregation promotes formation of triplet state, most likely by homofission occurring between tightly packed molecules within the aggregate.

• MeSH
• absorpce MeSH
• karotenoidy chemie   MeSH
• spektrální analýza MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH
• Názvy látek
• beta-apo-8'-carotenal MeSH Prohlížeč
• karotenoidy MeSH

We present a study of excited-states relaxation of the complex ReCl(CO)3(bpy) (bpy = 2,2-bipyridine) using a nonadiabatic TD-DFT dynamics on spin-mixed potential energy surfaces in explicit acetonitrile (ACN) and dimethylsulfoxide (DMSO) solutions up to 800 fs. ReCl(CO)3(bpy) belongs to a group of important photosensitizers which show ultrafast biexponential subpicosecond fluorescence decay kinetics. The choice of solvents was motivated by the different excited-state relaxation dynamics observed in subpicosecond time-resolved IR (TRIR) experiments. Simulations of intersystem crossing (ISC) showed the development of spin-mixed states in both solvents. Transformation of time-dependent populations of spin-mixed states enabled to monitor the temporal evolution of individual singlet and triplet states, fitting of bi-exponential decay kinetics, and simulating the time-resolved fluorescence spectra that show only minor differences between the two solvents. Analysis of structural relaxation and solvent reorganization employing time-resolved proximal distribution functions pointed to the factors influencing the fluorescence decay time constants. Nonadiabatic dynamics simulations of time-evolution of electronic, molecular, and solvent structures emerge as a powerful technique to interpret time-resolved spectroscopic data and ultrafast photochemical reactivity.

• Publikační typ
• časopisecké články MeSH