Detail
Article
Online article
FT
Medvik - BMC
  • Something wrong with this record ?

Broad habitat range of the phylogenetically narrow R-BT065 cluster, representing a core group of the Betaproteobacterial genus Limnohabitans

K. Simek, V. Kasalický, J. Jezbera, J. Jezberová, J. Hejzlar, M.W. Hahn

. 2010 ; 76 (3) : 631-639.

Language English Country United States

Document type Journal Article, Research Support, Non-U.S. Gov't

E-resources Online Full text

NLK Free Medical Journals from 1976 to 6 months ago
PubMed Central from 1976 to 1 year ago
Europe PubMed Central from 1976 to 6 months ago
Open Access Digital Library from 1953-01-01

The distribution of the phylogenetically narrow R-BT065 cluster (Betaproteobacteria) in 102 freshwater lakes, reservoirs, and various ponds located in central Europe (a total of 122 samples) was examined by using a cluster-specific fluorescence in situ hybridization probe. These habitats differ markedly in pH, conductivity, trophic status, surface area, altitude, bedrock type, and other limnological characteristics. Despite the broad ecological diversity of the habitats investigated, the cluster was detected in 96.7% of the systems, and its occurrence was not restricted to a certain habitat type. However, the relative proportions of the cluster in the total bacterioplankton were significantly lower in humic and acidified lakes than in pH-neutral or alkaline habitats. On average, the cluster accounted for 9.4% of the total bacterioplankton (range, 0 to 29%). The relative abundance and absolute abundance of these bacteria were significantly and positively related to higher pH, conductivity, and the proportion of low-molecular-weight compounds in dissolved organic carbon (DOC) and negatively related to the total DOC and dissolved aromatic carbon contents. Together, these parameters explained 55.3% of the variability in the occurrence of the cluster. Surprisingly, no clear relationship of the R-BT065 bacteria to factors indicating the trophic status of habitats (i.e., different forms of phosphorus and chlorophyll a content) was found. Based on our results and previously published data, we concluded that the R-BT065 cluster represents a ubiquitous, highly active segment of bacterioplankton in nonacidic lakes and ponds and that alga-derived substrates likely form the main pool of substrates responsible for its high growth potential and broad distribution in freshwater habitats.

References provided by Crossref.org

000      
00000naa a2200000 a 4500
001      
bmc12025444
003      
CZ-PrNML
005      
20130302155339.0
007      
ta
008      
120816s2010 xxu f 000 0#eng||
009      
AR
024    7_
$a 10.1128/aem.02203-09 $2 doi
035    __
$a (PubMed)19948856
040    __
$a ABA008 $b cze $d ABA008 $e AACR2
041    0_
$a eng
044    __
$a xxu
100    1_
$a Šimek, Karel, $d 1955- $7 xx0054521 $u Biology Centre AS CR, Hydrobiological Institute,Ceské Budejovice, Czech Republic. ksimek@hbu.cas.cz
245    10
$a Broad habitat range of the phylogenetically narrow R-BT065 cluster, representing a core group of the Betaproteobacterial genus Limnohabitans / $c K. Simek, V. Kasalický, J. Jezbera, J. Jezberová, J. Hejzlar, M.W. Hahn
520    9_
$a The distribution of the phylogenetically narrow R-BT065 cluster (Betaproteobacteria) in 102 freshwater lakes, reservoirs, and various ponds located in central Europe (a total of 122 samples) was examined by using a cluster-specific fluorescence in situ hybridization probe. These habitats differ markedly in pH, conductivity, trophic status, surface area, altitude, bedrock type, and other limnological characteristics. Despite the broad ecological diversity of the habitats investigated, the cluster was detected in 96.7% of the systems, and its occurrence was not restricted to a certain habitat type. However, the relative proportions of the cluster in the total bacterioplankton were significantly lower in humic and acidified lakes than in pH-neutral or alkaline habitats. On average, the cluster accounted for 9.4% of the total bacterioplankton (range, 0 to 29%). The relative abundance and absolute abundance of these bacteria were significantly and positively related to higher pH, conductivity, and the proportion of low-molecular-weight compounds in dissolved organic carbon (DOC) and negatively related to the total DOC and dissolved aromatic carbon contents. Together, these parameters explained 55.3% of the variability in the occurrence of the cluster. Surprisingly, no clear relationship of the R-BT065 bacteria to factors indicating the trophic status of habitats (i.e., different forms of phosphorus and chlorophyll a content) was found. Based on our results and previously published data, we concluded that the R-BT065 cluster represents a ubiquitous, highly active segment of bacterioplankton in nonacidic lakes and ponds and that alga-derived substrates likely form the main pool of substrates responsible for its high growth potential and broad distribution in freshwater habitats.
650    _2
$a nadmořská výška $7 D000531
650    _2
$a Betaproteobacteria $x klasifikace $x genetika $x izolace a purifikace $7 D020562
650    _2
$a uhlík $x analýza $7 D002244
650    _2
$a chlorofyl $x analýza $7 D002734
650    _2
$a shluková analýza $7 D016000
650    _2
$a počet mikrobiálních kolonií $7 D015169
650    _2
$a DNA bakterií $x chemie $7 D004269
650    _2
$a ribozomální DNA $x genetika $7 D004275
650    _2
$a ekosystém $7 D017753
650    _2
$a Eukaryota $x genetika $7 D056890
650    _2
$a sladká voda $x chemie $x mikrobiologie $7 D005618
650    _2
$a genetická variace $7 D014644
650    _2
$a skleníkový efekt $7 D017752
650    _2
$a hybridizace in situ fluorescenční $7 D017404
650    _2
$a fosfor $x analýza $7 D010758
650    _2
$a fylogeneze $7 D010802
650    _2
$a RNA ribozomální 16S $x genetika $7 D012336
650    _2
$a RNA ribozomální 18S $x genetika $7 D012337
650    _2
$a sekvenční analýza DNA $7 D017422
650    _2
$a mikrobiologie vody $7 D014871
651    _2
$a Evropa $7 D005060
655    _2
$a časopisecké články $7 D016428
655    _2
$a práce podpořená grantem $7 D013485
700    1#
$a Kasalický, Vojtěch, $d 1980- $7 jcu2012712934
700    1_
$a Jezbera, Jan
700    1#
$a Jezberová, Jitka, $d 1978- $7 stk2007393623
700    1#
$a Hejzlar, Josef. $7 xx0135503
700    1_
$a Hahn, Martin W
773    0_
$w MED00000487 $t Applied and environmental microbiology $x 1098-5336 $g Roč. 76, č. 3 (2010), s. 631-639
856    41
$u https://pubmed.ncbi.nlm.nih.gov/19948856 $y Pubmed
910    __
$a ABA008 $b sig $c sign $y m
990    __
$a 20120816 $b ABA008
991    __
$a 20130302155547 $b ABA008
999    __
$a ok $b bmc $g 947486 $s 782790
BAS    __
$a 3
BAS    __
$a PreBMC
BMC    __
$a 2010 $b 76 $c 3 $d 631-639 $i 1098-5336 $m Applied and environmental microbiology $n Appl Environ Microbiol $x MED00000487
LZP    __
$a Pubmed-20120816/10/02

Find record

Citation metrics

Loading data ...

Archiving options

Loading data ...