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Solution NMR and molecular dynamics reveal a persistent alpha helix within the dynamic region of PsbQ from photosystem II of higher plants
P. Rathner, A. Rathner, M. Horničáková, C. Wohlschlager, K. Chandra, J. Kohoutová, R. Ettrich, R. Wimmer, N. Müller,
Jazyk angličtina Země Spojené státy americké
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
26138376
DOI
10.1002/prot.24853
Knihovny.cz E-zdroje
- MeSH
- fotosystém II (proteinový komplex) chemie genetika metabolismus MeSH
- krystalografie rentgenová MeSH
- magnetická rezonanční spektroskopie metody MeSH
- rekombinantní proteiny chemie metabolismus MeSH
- rostlinné proteiny chemie genetika metabolismus MeSH
- roztoky MeSH
- sekundární struktura proteinů * MeSH
- sekvence aminokyselin MeSH
- simulace molekulární dynamiky * MeSH
- Spinacia oleracea genetika metabolismus MeSH
- terciární struktura proteinů MeSH
- termodynamika MeSH
- vazba proteinů MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
The extrinsic proteins of photosystem II of higher plants and green algae PsbO, PsbP, PsbQ, and PsbR are essential for stable oxygen production in the oxygen evolving center. In the available X-ray crystallographic structure of higher plant PsbQ residues S14-Y33 are missing. Building on the backbone NMR assignment of PsbQ, which includes this "missing link", we report the extended resonance assignment including side chain atoms. Based on nuclear Overhauser effect spectra a high resolution solution structure of PsbQ with a backbone RMSD of 0.81 Å was obtained from torsion angle dynamics. Within the N-terminal residues 1-45 the solution structure deviates significantly from the X-ray crystallographic one, while the four-helix bundle core found previously is confirmed. A short α-helix is observed in the solution structure at the location where a β-strand had been proposed in the earlier crystallographic study. NMR relaxation data and unrestrained molecular dynamics simulations corroborate that the N-terminal region behaves as a flexible tail with a persistent short local helical secondary structure, while no indications of forming a β-strand are found.
Institute of Organic Chemistry Johannes Kepler University Linz Linz 4040 Austria
Scientific Computing Johannes Kepler University Linz Linz 4040 Austria
Citace poskytuje Crossref.org
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- $a The extrinsic proteins of photosystem II of higher plants and green algae PsbO, PsbP, PsbQ, and PsbR are essential for stable oxygen production in the oxygen evolving center. In the available X-ray crystallographic structure of higher plant PsbQ residues S14-Y33 are missing. Building on the backbone NMR assignment of PsbQ, which includes this "missing link", we report the extended resonance assignment including side chain atoms. Based on nuclear Overhauser effect spectra a high resolution solution structure of PsbQ with a backbone RMSD of 0.81 Å was obtained from torsion angle dynamics. Within the N-terminal residues 1-45 the solution structure deviates significantly from the X-ray crystallographic one, while the four-helix bundle core found previously is confirmed. A short α-helix is observed in the solution structure at the location where a β-strand had been proposed in the earlier crystallographic study. NMR relaxation data and unrestrained molecular dynamics simulations corroborate that the N-terminal region behaves as a flexible tail with a persistent short local helical secondary structure, while no indications of forming a β-strand are found.
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