Crystals of DhaA mutants from Rhodococcus rhodochrous NCIMB 13064 diffracted to ultrahigh resolution: crystallization and preliminary diffraction analysis

. 2008 Feb 01 ; 64 (Pt 2) : 137-40. [epub] 20080131

Jazyk angličtina Země Velká Británie, Anglie Médium print-electronic

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/pmid18259069

The enzyme DhaA from Rhodococcus rhodochrous NCIMB 13064 belongs to the haloalkane dehalogenases, which catalyze the hydrolysis of haloalkanes to the corresponding alcohols. The haloalkane dehalogenase DhaA and its variants can be used to detoxify the industrial pollutant 1,2,3-trichloropropane (TCP). Three mutants named DhaA04, DhaA14 and DhaA15 were constructed in order to study the importance of tunnels connecting the buried active site with the surrounding solvent to the enzymatic activity. All protein mutants were crystallized using the sitting-drop vapour-diffusion method. The crystals of DhaA04 belonged to the orthorhombic space group P2(1)2(1)2(1), while the crystals of the other two mutants DhaA14 and DhaA15 belonged to the triclinic space group P1. Native data sets were collected for the DhaA04, DhaA14 and DhaA15 mutants at beamline X11 of EMBL, DESY, Hamburg to the high resolutions of 1.30, 0.95 and 1.15 A, respectively.

Zobrazit více v PubMed

Adams, P. D., Pannu, N. S., Read, R. J. & Brünger, A. T. (1997). Proc. Natl Acad. Sci. USA, 94, 5018–5023. PubMed PMC

Banas, P., Otyepka, M., Jerabek, P., Petrek, M. & Damborsky, J. (2006). J. Comput. Aided Mol. Des.20, 375–383. PubMed

Bosma, T., Damborsky, J., Stucki, G. & Janssen, D. B. (2002). Appl. Environ. Microbiol.68, 3582–3587. PubMed PMC

Bosma, T., Kruizinga, E., de Bruin, E. J., Poelarends, G. J. & Janssen, D. B. (1999). Appl. Environ. Microbiol.65, 4575–4581. PubMed PMC

Campbell, D. W., Muller, C. & Reardon, K. F. (2006). Biotechnol. Lett.28, 883–887. PubMed

Chaloupkova, R., Sykorova, J., Prokop, Z., Jesenska, A., Monincova, M., Pavlova, M., Tsuda, M., Nagata, Y. & Damborsky, J. (2003). J. Biol. Chem.278, 52622–52628. PubMed

Ducruix, A. & Giegé, R. (1999). Crystallization of Nucleic Acids and Proteins. A Practical Approach, 2nd ed. Oxford University Press.

Janssen, D. B. (2004). Curr. Opin. Chem. Biol.8, 150–159. PubMed

Janssen, D. B., Dinkla, I. J. T., Poelarends, G. J. & Terpstra, P. (2005). Environ. Microbiol.7, 1868–1882. PubMed

Kabsch, W. (1993). J. Appl. Cryst.26, 795–800.

Kulakova, A. N., Larkin, M. J. & Kulakov, L. A. (1997). Microbiology, 143, 109–115. PubMed

Matthews, B. W. (1968). J. Mol. Biol.33, 491–497. PubMed

Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240–255. PubMed

Nagata, Y., Hynkova, K., Damborsky, J. & Takagi, M. (1999). Protein Expr. Purif.17, 229–304. PubMed

Newman, J., Peat, T. S., Richard, R., Kan, L., Swanson, P. E., Affholter, J. A., Holmes, I. H., Schindler, J. F., Unkefer, C. J. & Terwilliger, T. C. (1999). Biochemistry, 38, 16105–16114. PubMed

Otwinowski, Z. & Minor, W. (1997). Methods Enzymol.276, 307–326. PubMed

Panjikar, S., Parthasarathy, V., Lamzin, V. S., Weiss, M. S. & Tucker, P. A. (2005). Acta Cryst. D61, 449–457. PubMed

Prokop, Z., Damborsky, J., Nagata, Y. & Janssen, D. B. (2004). Patent PCT/CZ2005/000099.

Prokop, Z., Damborský, J., Opluštil, F., Jesenská, A. & Nagata, Y. (2005). Patent CZ 298287.

Prokop, Z., Oplustil, F., DeFrank, J. & Damborsky, J. (2006). Biotechnol. J.1, 1370–1380. PubMed

Schindler, J. F., Naranjo, P. A., Honaberger, D. A., Chang, C.-H., Brainard, J. R., Vanderberg, L. A. & Unkefer, C. J. (1999). Biochemistry, 38, 5772–5778. PubMed

Stucki, G. & Thuer, M. (1995). Environ. Sci. Technol.29, 2339–2345. PubMed

Vagin, A. & Teplyakov, A. (1997). J. Appl. Cryst.30, 1022–1025.

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...