• This record comes from PubMed

Recruitment of Oct4 protein to UV-damaged chromatin in embryonic stem cells

. 2011 ; 6 (12) : e27281. [epub] 20111202

Language English Country United States Media print-electronic

Document type Journal Article, Research Support, Non-U.S. Gov't

BACKGROUND: Oct4 is a specific marker of embryonic stem cell (ESC) pluripotency. However, little is known regarding how Oct4 responds to DNA damage. Here, we investigated whether Oct4 recognizes damaged chromatin in mouse ESCs stably expressing GFP-Oct4. These experiments should contribute to the knowledge of how ESC genomic integrity is maintained, which is crucial for potential application of human ESCs in regenerative medicine. METHODOLOGY/PRINCIPAL FINDINGS: We used time-lapse confocal microscopy, microirradiation by UV laser (355 nm), induction of DNA lesions by specific agents, and GFP technology to study the Oct4 response to DNA damage. We found that Oct4 accumulates in UV-damaged regions immediately after irradiation in an adenosine triphosphate-dependent manner. Intriguingly, this event was not accompanied by pronounced Nanog and c-MYC recruitment to the UV-damaged sites. The accumulation of Oct4 to UV-damaged chromatin occurred simultaneously with H3K9 deacetylation and H2AX phosphorylation (γH2AX). Moreover, we observed an ESC-specific nuclear distribution of γH2AX after interference to cellular processes, including histone acetylation, transcription, and cell metabolism. Inhibition of histone deacetylases mostly prevented pronounced Oct4 accumulation at UV-irradiated chromatin. CONCLUSIONS/SIGNIFICANCE: Our studies demonstrate pluripotency-specific events that accompany DNA damage responses. Here, we discuss how ESCs might respond to DNA damage caused by genotoxic injury that might lead to unwanted genomic instability.

See more in PubMed

de Waard H, Sonneveld E, de Wit J, Esveldt-van Lange R, Hoeijmakers JH, et al. Cell-type-specific consequences of nucleotide excision repair deficiencies: Embryonic stem cells versus fibroblasts. DNA Repair (Amst) 2008;7:1659–1669. PubMed

Giglia-Mari G, Zotter A, Vermeulen W. DNA Damage Response. Cold Spring Harb Perspect Biol The Nucleus. 2010:361–379. PubMed PMC

Niwa H, Miyazaki J, Smith AG. Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nat Genet. 2000;24:372–376. PubMed

Niwa H, Masui S, Chambers I, Smith AG, Miyazaki J. Phenotypic complementation establishes requirements for specific POU domain and generic transactivation function of Oct-3/4 in embryonic stem cells. Mol Cell Biol. 2002;22:1526–1536. PubMed PMC

Shimozaki K, Nakashima K, Niwa H, Taga T. Involvement of Oct3/4 in the enhancement of neuronal differentiation of ES cells in neurogenesis-inducing cultures. Development. 2003;130:2505–2512. PubMed

Reim G, Mizoguchi T, Stainier DY, Kikuchi Y, Brand M. The POU domain protein spg (pou2/Oct4) is essential for endoderm formation in cooperation with the HMG domain protein casanova. Dev Cell. 2004;6:91–101. PubMed

Boyer LA, Lee TI, Cole MF, Johnstone SE, Levine SS, et al. Core transcriptional regulatory circuitry in human embryonic stem cells. Cell. 2005;122:947–956. PubMed PMC

Loh YH, Wu Q, Cheb JL, Vega VB, Zhang W, et al. The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells. Nat Genet. 2006;38:431–440. PubMed

Levasseur DN, Wang J, Dorschner MO, Stamatoyannopoulos JA, Orkin SH. Oct4 dependence of chromatin structure within the extended Nanog locus in ES cells. Genes Dev. 2008;22:575–580. PubMed PMC

Jiang J, Ng HH. TGF beta and SMADs talk to NANOG in human embryonic stem cells. Cell Stem Cell. 2008;3:127–128. PubMed

Niwa H, Ogawa K, Shimosato D, Adachi K. A parallel circuit of LIF signalling pathways maintains pluripotency of mouse ES cells. Nature. 2009;460:118–122. PubMed

Savarese F, Dávila A, Nechanitzky R, De La Rosa-Velazquez I, Pereira CF, et al. Satb1 and Satb2 regulate embryonic stem cell differentiation and Nanog expression. Genes Dev. 2009;23:2625–2638. PubMed PMC

Hochedlinger K, Jaenisch R. Nuclear reprogramming and pluripotency. Nature. 2006;441:1061–1067. PubMed

Bakkenist CJ, Kastan MB. Initiating cellular stress responses. Cell. 2004;118:9–17. PubMed

Peterson CL, Côté J. Cellular machineries for chromosomal DNA repair. Genes Dev. 2004;18:602–616. PubMed

Misteli T, Soutoglou E. The emerging role of nuclear architecture in DNA repair and genome maintenance. Nat Rev Mol Cell Biol. 2009;10:243–254. PubMed PMC

Rogakou EP, Pilch DR, Orr AH, Ivanova VS, Bonner WM. DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139. J Biol Chem. 1998;273:5858–5868. PubMed

Celeste A, Fernandez-Capetillo O, Kruhlak MJ, Pilch DR, Staudt DW, et al. Histone H2AX phosphorylation is dispensable for the initial recognition of DNA breaks. Nat Cell Biol. 2003;5:675–679. PubMed

Fernandez-Capetillo O, Lee A, Nussenzweig M, Nussenzweig A. H2AX: the histone guardian of the genome. DNA Repair (Amst) 2004;3:959–967. PubMed

Ayoub N, Jeyasekharan AD, Bernal JA, Venkitaraman AR. HP1-beta mobilization promotes chromatin changes that initiate the DNA damage response. Nature. 2008;453:682–686. PubMed

Luijsterburg MS, Dinant C, Lans H, Stap J, Wiernasz E, et al. Heterochromatin protein 1 is recruited to various types of DNA damage. J Cell Biol. 2009;185:577–586. PubMed PMC

Chou DM, Adamson B, Dephoure NE, Tan X, Mottle AC, et al. A chromatin localization screen reveals poly (ADP ribose)-regulated recruitment of the repressive polycomb and NuRD complexes to sites of DNA damage. Proc Natl Acad Sci USA. 2010;107:18475–18480. PubMed PMC

Larsen DH, Poinsignon C, Gudjonsson T, Dinant C, Payne MR, et al. The chromatin-remodeling factor CHD4 coordinates signaling and repair after DNA damage. J Cell Biol. 2010;190:731–740. PubMed PMC

Brimble SN, Zeng X, Weiler DA, Luo Y, Liu Y, et al. Karyotypic stability, genotyping, differentiation, feeder-free maintenance, and gene expression sampling in three human embryonic stem cell lines derived prior to August 9, 2001. Stem Cells Dev. 2004;13:585–597. PubMed

Cowan CA, Klimanskaya I, McMahon J, Atienza J, Witmyer J, et al. Derivation of embryonic stem-cell lines from human blastocysts. N Engl J Med. 2004;350:1353–1356. PubMed

Mitalipova MM, Rao RR, Hoyer DM, Johnson JA, Meisner LF, et al. Preserving the genetic integrity of human embryonic stem cells. Nat Biotechnol. 2005;23:19–20. PubMed

Allegrucci C, Young LE. Differences between human embryonic stem cell lines. Hum Reprod Update. 2007;13:103–120. PubMed

Kuijk EW, Du Puy L, Van Tol HT, Oei CH, Haagsman HP, et al. Differences in early lineage segregation between mammals. Dev Dyn. 2008;237:918–927. PubMed

Takeda J, Seino S, Bell GI. Human Oct3 gene family: cDNA sequences, alternative splicing, gene organization, chromosomal location, and expression at low levels in adult tissues. Nucleic Acids Res. 1992;20:4613–4620. PubMed PMC

Kirchhof N, Carnwath JW, Lemme E, Anastassiadis K, Schöler H, et al. Expression pattern of Oct4 in preimplantation embryos of different species. Repris. 2000;63:1698–1705. PubMed

Kong X, Mohanty SK, Stephens J, Heale JT, Gomez-Godinez V, et al. Comparative analysis of different laser systems to study cellular responses to DNA damage in mammalian cells. Nucleic Acids Res. 2009;37:e68. PubMed PMC

Šustáčková G, Legartová S, Kozubek S, Stixová L, Pacherník J, et al. Differentiation-independent fluctuation of pluripotency-related transcription factors and other epigenetic markers in embryonic stem cell colonies. Stem Cells Dev PMID. 2011:21609209. PubMed PMC

Hong Z, Jiang J, Lan L, Nakajima S, Kanno S, et al. A polycomb group protein, PHF1, is involved in the response to DNA double-strand breaks in human cell. Nucleic Acids Res. 2008;36:2939–2947. PubMed PMC

Suzuki K, Yamauchi M, Oka Y, Suzuki M, Yamashita A novel and simple micro-irradiation technique for creating localized DNA double-strand breaks. Nucleic Acids Res. 2010;38:e129. PubMed PMC

Kruhlak MJ, Celeste A, Dellaire G, Fernandez-Capetillo O, Müller WG, et al. Changes in chromatin structure and mobility in living cells at sites of DNA double-strand breaks. J Cell Biol. 2006;172:823–834. PubMed PMC

Bakkenist CJ, Kastan MB. DNA damage activates ATM through intermolecular autophosphorylation and dimer dissociation. Nature. 2003;421:499–506. PubMed

Bártová E, Krejčí J, Harničarová A, Kozubek S. Differentiation of human embryonic stem cells induces condensation of chromosome territories and formation of heterochromatin protein 1 foci. Differentiation. 2008;76:24–32. PubMed

Momcilovic O, Knobloch L, Fornsaglio J, Varum S, Easley C, et al. DNA damage responses in human induced pluripotent stem cells and embryonic stem cells. PLoS One. 2010;5:e13410. PubMed PMC

Dinant C, Houtsmuller AB, Vermeulen W. Chromatin structure and DNA damage repair. Epigenetics & Chromatin. 2008;1:9. PubMed PMC

Ramanathan B, Smerdon MJ. Changes in nuclear protein acetylation in UV-damaged human cells. Carcinogenesis. 1986;7:1087–1094. PubMed

Ramanathan B, Smerdon MJ. Enhanced DNA repair synthesis in hyperacetylated nucleosomes. J Biol Chem. 1989;264:11026–11034. PubMed

Kruhlak MJ, Celeste A, Nussenzweig A. Spatio-temporal dynamics of chromatin containing DNA breaks. Cell Cycle. 2006;5:1910–1912. PubMed

Šustáčková G, Kozubek S, Stixová L, Legartová S, Matula P, et al. Acetylation-dependent nuclear arrangement and recruitment of BMI1 protein to UV-damaged chromatin. J Cell Physiol PMID. 2011;21732356 PubMed

Banáth JP, Bañuelos CA, Klokov D, MacPhail SM, Lansdorp PM, et al. Explanation for excessive DNA single-strand breaks and endogenous repair foci in pluripotent mouse embryonic stem cells. Exp Cell Res. 2009;315:1505–1520. PubMed

Meshorer E, Yellajoshula D, George E, Scambler PJ, Brown DT, et al. Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells. Dev Cell. 2006;10:105–116. PubMed PMC

Krejčí J, Uhlířová R, Galiová G, Kozubek S, Šmigová J, et al. Genome-wide reduction in H3K9 acetylation during human embryonic stem cell differentiation. J Cell Physiol. 2009;219:677–687. PubMed

Jin T, Branch DR, Zhang X, Qi S, Youngson B, et al. Examination of POU homeobox gene expression in human breast cancer cells. Int J Cancer. 1999;81:104–112. PubMed

Bártová E, Kozubek S, Kozubek M, Jirsová P, Lukášová E, et al. The influence of the cell cycle, differentiation and irradiation on the nuclear location of the abl, bcr and c-myc genes in human leukemic cells. Leuk Res. 2000;24:233–241. PubMed

Bártová E, Stixová L, Galiová G, Harničarová Horáková A, Legartová S, et al. Mutant genetic background affects the functional rearrangement and kinetic properties of JMJD2b histone demethylase. J Mol Biol. 2011;405:679–695. PubMed

Stixová L, Bártová E, Matula P, Daněk O, Legartová S, et al. Heterogeneity in the kinetics of nuclear proteins and trajectories of substructures associated with heterochromatin. Epigenetics & Chromatin. 2011;4:5. PubMed PMC

Newest 20 citations...

See more in
Medvik | PubMed

Early recruitment of PARP-dependent m8A RNA methylation at DNA lesions is subsequently accompanied by active DNA demethylation

. 2022 Jan ; 19 (1) : 1153-1171.

G-Quadruplex Structures Colocalize with Transcription Factories and Nuclear Speckles Surrounded by Acetylated and Dimethylated Histones H3

. 2021 Feb 17 ; 22 (4) : . [epub] 20210217

The SC-35 Splicing Factor Interacts with RNA Pol II and A-Type Lamin Depletion Weakens This Interaction

. 2021 Feb 01 ; 10 (2) : . [epub] 20210201

A role of the 53BP1 protein in genome protection: structural and functional characteristics of 53BP1-dependent DNA repair

. 2019 Apr 17 ; 11 (8) : 2488-2511.

Advanced Confocal Microscopy Techniques to Study Protein-protein Interactions and Kinetics at DNA Lesions

. 2017 Nov 12 ; (129) : . [epub] 20171112

HP1β-dependent recruitment of UBF1 to irradiated chromatin occurs simultaneously with CPDs

. 2014 ; 7 (1) : 39. [epub] 20141230

Coilin is rapidly recruited to UVA-induced DNA lesions and γ-radiation affects localized movement of Cajal bodies

. 2014 May-Jun ; 5 (3) : 460-8. [epub] 20140523

PRMT1 arginine methyltransferase accumulates in cytoplasmic bodies that respond to selective inhibition and DNA damage

. 2014 May 02 ; 58 (2) : 2389. [epub] 20140502

Epigenetics and chromatin plasticity in embryonic stem cells

. 2013 Jul 26 ; 5 (3) : 73-85.

Find record

Citation metrics

Loading data ...

Archiving options

Loading data ...