• This record comes from PubMed

Lincomycin biosynthesis involves a tyrosine hydroxylating heme protein of an unusual enzyme family

. 2013 ; 8 (12) : e79974. [epub] 20131204

Language English Country United States Media electronic-ecollection

Document type Journal Article, Research Support, Non-U.S. Gov't

The gene lmbB2 of the lincomycin biosynthetic gene cluster of Streptomyces lincolnensis ATCC 25466 was shown to code for an unusual tyrosine hydroxylating enzyme involved in the biosynthetic pathway of this clinically important antibiotic. LmbB2 was expressed in Escherichia coli, purified near to homogeneity and shown to convert tyrosine to 3,4-dihydroxyphenylalanine (DOPA). In contrast to the well-known tyrosine hydroxylases (EC 1.14.16.2) and tyrosinases (EC 1.14.18.1), LmbB2 was identified as a heme protein. Mass spectrometry and Soret band-excited Raman spectroscopy of LmbB2 showed that LmbB2 contains heme b as prosthetic group. The CO-reduced differential absorption spectra of LmbB2 showed that the coordination of Fe was different from that of cytochrome P450 enzymes. LmbB2 exhibits sequence similarity to Orf13 of the anthramycin biosynthetic gene cluster, which has recently been classified as a heme peroxidase. Tyrosine hydroxylating activity of LmbB2 yielding DOPA in the presence of (6R)-5,6,7,8-tetrahydro-L-biopterin (BH4) was also observed. Reaction mechanism of this unique heme peroxidases family is discussed. Also, tyrosine hydroxylation was confirmed as the first step of the amino acid branch of the lincomycin biosynthesis.

See more in PubMed

Spizek J, Rezanka T (2004) Lincomycin, cultivation of producing strains and biosynthesis. Appl Microbiol Biotechnol 63: 510–519. PubMed

Brahme NM, Gonzalez JE, Rolls JP, Hessler EJ, Mizsak S, et al. (1984) Biosynthesis of the lincomycins. 1. Studies using stable isotopes on the biosynthesis of the propyl-L-hygric and ethyl-L-hygric acid moieties of lincomycin-A and lincomycin-B. J Am Chem Soc 106: 7873–7878.

Brahme NM, Gonzalez JE, Mizsak S, Rolls JR, Hessler EJ, et al. (1984) Biosynthesis of the lincomycins. 2. Studies using stable isotopes on the biosynthesis of methylthiolincosaminide moiety of lincomycin. J Am Chem Soc 106: 7878–7883.

Kuo MS, Yurek DA, Coats JH, Chung ST, Li GP (1992) Isolation and identification of 3-propylidene-delta-1-pyrroline-5-carboxylic acid, a biosynthetic precursor of lincomycin. J Antibiot 45: 1773–1777. PubMed

Novotna J, Honzatko A, Bednar P, Kopecky J, Janata J, et al. (2004) L-3,4-Dihydroxyphenyl alanine-extradiol cleavage is followed by intramolecular cyclization in lincomycin biosynthesis. Eur J Biochem 271: 1–6. PubMed

Koberska M, Kopecky J, Olsovska J, Jelinkova M, Ulanova D, et al. (2008) Sequence analysis and heterologous expression of the lincomycin biosynthetic cluster of the type strain Streptomyces lincolnensis ATCC 25466. Folia Microbiol 53: 395–401. PubMed

Neusser D, Schmidt H, Spizek J, Novotna J, Peschke U, et al. (1998) The genes lmbB1 and lmbB2 of Streptomyces lincolnensis encode enzymes involved in the conversion of L-tyrosine to propylproline during the biosynthesis of the antibiotic lincomycin A. Arch Microbiol 169: 322–332. PubMed

Munro AW, Girvan HM, McLean KJ (2007) Variations on a (t)heme: novel mechanisms, redox partners and catalytic functions in the cytochrome P450 superfamily. Nat Prod Rep 24: 585–609. PubMed

Notomista E, Lahm A, Di Donato A, Tramontano A (2003) Evolution of Bacterial and Archeal Multicomponent Monooxygenases. J Mol Evol 56: 435–445. PubMed

Sariaslani FS (1989) Microbial enzymes for oxidation of organic molecules. Crit Rev Biotechnol 9: 171–257. PubMed

Fitzpatrick PF (2003) Mechanism of aromatic amino acid hydroxylation. Biochemistry 42: 14083–14091. PubMed PMC

Ullrich R, Hofrichter M (2007) Enzymatic hydroxylation of aromatic compounds. Cell Mol Life Sci 64: 271–293. PubMed PMC

Connor KL, Colabroy KL, Gerratana B (2011) A heme peroxidase with a functional role as an L-tyrosine hydroxylase in the biosynthesis of anthramycin. Biochemistry 50: 892–8936. PubMed PMC

Tang M-C, Fu C-Y, Tang G-L (2012) Characterization of SfmD as a Heme peroxidase that catalyzes the regioselective hydroxylation of 3-methyltyrosine to 3-hydroxy-5-methyltyrosine in saframycin A biosynthesis. J Biol Chem 287: 5112–5121. PubMed PMC

Hu Y, Phelan V, Ntai I, Farnet CM, Zazopoulos E, et al. (2007) Benzodiazepine biosynthesis in Streptomyces refuineus . Chem Biol 14: 69–701. PubMed

Li W, Chou S-C, Khullar A, Gerratana B (2009) Cloning and Characterization of the Biosynthetic Gene Cluster for Tomaymycin, an SJG-136 Monomeric Analog. Appl Environ Microbiol 75: 2958–2963. PubMed PMC

Li W, Khullar A, Chou S-C, Sacramo A, Gerratana B (2009) Biosynthesis of Sibiromycin, a Potent Antitumor Antibiotic. Appl Environ Microbiol 75: 2869–2878. PubMed PMC

Höfer I, Crüsemann M, Radzom M, Geers B, Flachshaar D, et al. (2011) Insights into the biosynthesis of hormaomycin, an exceptionally complex bacterial signaling metabolite. Chem Biol 18: 381–391. PubMed

Hurley LH (1980) Elucidation and formulation of novel biosynthetic pathways leading to the pyrrolo[1,4]benzodiazepine antibiotics anthramycin, tomaymycin, and sibiromycin. Acc Chem Res 13: 263–269.

Gasteiger E, Hoogland C, Gattiker A, Duvaud S, Wilkins MR, et al... (2005) Protein Identification and Analysis Tools on the ExPASy server. In: Walker JM, editor. The Proteomics Protocols Handbook.Totowa: Humana Press Inc., pp. 571–607.

Spiro TG, Li X-Y (1988) In Thomas G, Spiro TG, editors. Biological Applications of Raman Spectroscopy, Vol. 3. Resonance Raman Spectra of Heme and Metalloproteins. New York: John Wiley & Sons, pp 1–37.

Rousseau DL, Ondrias MR, LaMar GN, Kong SB, Smith KM (1983) Resonance Raman spectra of the heme in leghemoglobin. Evidence for the absence of ruffling and the influence of the vinyl groups. J Biol Chem 258: 1740–1746. PubMed

Ogura T, Yoshikawa S, Kitagawa T (1985) Resonance Raman study on photoreduction of cytochrome c oxidase: distinction of cytochromes a and a3 in the intermediate oxidation states. Biochemistry 24: 7746–7752. PubMed

Babcock GT (1988) In Thomas G, Spiro TG, editors. Biological Applications of Raman Spectroscopy, Vol. 3. Resonance Raman Spectra of Heme and Metalloproteins. New York: John Wiley & Sons,, pp. 293–346.

Remba RD, Champion PM, Fitchen DB, Chiang R, Hager LP (1979) Resonance Raman investigations of chloroperoxidase, horseradish peroxidase, and cytochrome c using Soret band laser excitation. Biochemistry 18: 2280–2290. PubMed

Harnastai IN, Gilep AA, Usanov SA (2006) The development of an efficient system for heterologous expression of cytochrome P450s in Escherichia coliusing hemAgene co-expression. Protein Expres Purif 46: 47–55. PubMed

Hrycay EG, Bandiera SM (2012) The monooxygenase, peroxidase, and peroxygenase properties of cytochrome P450. Arch Biochem Biophys 522: 71–89. PubMed

Courteix A, Bergelt A (1995) Horseradish peroxidase-catalyzed hydroxylation of phenol: I. Thermodynamic analysis Enzyme Microb Technol 17: 1087–1093.

Capeillere-Blandin C, Mathieu D, Mansuy D (2005) Reduction of ferric haemoproteins by tetrahydropterins: a kinetic study. Biochem J 392: 583–587. PubMed PMC

Fu R, Gupta R, Geng J, Dornevil K, Wang S, Zhang Y, et al. (2011) Enzyme Reactivation by Hydrogen Peroxide in Heme-based. Tryptophan Dioxygenase J Biol Chem 286: 26541–26554. PubMed PMC

Vlasits J, Jakopitsch C, Bernroitner M, Zamocky M, Furtmüller PG, et al. (2010) Mechanisms of catalase activity of heme peroxidases. Arch Biochem Biophys 500: 74–81. PubMed

Hersleth H-P, Ryde U, Rydberg P, Görbitz CH, Andersson KK (2006) Structures of the high-valent metal-ion haem-oxygen intermediates in peroxidases, oxygenases and catalases. J Inorg Biochem 100: 460–476. PubMed

Battistuzzi G, Bellei M, Bortolotti CA, Sola M (2010) Redox properties of heme peroxidases. Arch Biochem Biophys 500: 21–36. PubMed

Guengerich FP. Martin MV (1998) Purification of cytochromes P450. In: Phillips IR, Shephard E A, editors. Methods in Molecular Biology, Vol. 107. Totowa: Humana Press, Inc. pp 35–54. PubMed

Poulos TE, Johnson EF (2005) Structures of cytochrome P450 enzymes. In: Ortiz De Montellano PR, editor. Cytochrome P450: Structure, Mechanism, and Biochemistry. New York: Kluwer academic/Plenum Publishers, pp 87–114.

Hanano A, Burcklen M, Flenet M, Ivancich A, Louwagie M, et al. (2006) Plant Seed Peroxygenase Is an Original Heme-oxygenase with an EF-hand Calcium Binding Motif. J Biol Chem 281: 33140–33151. PubMed

Gröbe G, Ullrich R, Pecyna MJ, Kapturska D, Friedrich S, et al. (2011) High-yield production of aromatic peroxygenase by the agaric fungus Marasmius rotula . AMB Express 1: 3 Available: http://www.amb-express.com/content/1/1/31. Accessed 11 October 2011. PubMed PMC

Tanaka M, Ishimori K, Mukai M, Kitagawa T, Morishima I (1997) Catalytic activities and structural properties of horseradish peroxidase distal His42→Glu or Gln mutant. Biochemistry 36: 9889–9898. PubMed

Tanaka M, Ishimori K, Morishima I (1996) The Distal Glutamic Acid As Acid-Base Catalyst in the Distal Site of Horseradish Peroxidase Biochem. Biophys Res Commun 227: 393–399. PubMed

Yi X, Mroczko M, Manoj KM, Wang X, Hager LP (1999) Replacement of the proximal heme thiolate ligand in chloroperoxidase with a histidine residue. Proc Natl Acad Sci USA 96: 12412–12417. PubMed PMC

Matsunaga I, Sumimoto T, Ayata M, Ogura H (2002) Functional modulation of a peroxygenase cytochrome P450: novel insight into the mechanisms of peroxygenase and peroxidase enzymes. FEBS Lett 528: 90–94. PubMed

Yasui H, Deo K, Ogura Y, Yoshida H, Shiraga T, et al. (2002) Evidence for Singlet Oxygen Involvement in Rat and Human Cytochrome P450-dependent Substrate Oxidations. Drug Metab Pharmacokinet 17: 416–426. PubMed

Hayashi S, Yasui H, Sakuray H (2005) Essential role of singlet oxygen species in cytochrome P450-dependent substrate oxygenation by rat liver microsomes. Drug Metab Pharmacokinet 20: 14–23. PubMed

Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res: 25: 3389–3402. PubMed PMC

Park J, Karplus K, Barrett C, Hughey R, Haussler D, et al. (1998) Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. J Mol Biol 284: 1201–1210. PubMed

Olsovska J, Novotna J, Flieger M, Spizek J (2007) Assay of tyrosine hydroxylase based on high-performance liquid chromatography separation and quantification of L-dopa and L-tyrosine. Biomed Chromatogr 21: 1252–1258. PubMed

Hildebrandt AG, Roots I, Tjoe M, Heinemeyer G (1978) Hydrogen Peroxide in Hepatic Microsomes. In: Fleischer S, Packer L, editors. Methods in Enzymology Vol. 52. Orlando: Academic Press Inc., pp 342–350. PubMed

Mishin V, Gray JP, Heck DE, Laskin DL, Laskin JD (2010) Application of Amplex red/horseradish peroxidase assay to measure hydrogen peroxide production by recombinant microsomal enzymes. Free Radical Biol Med 48: 1485–1491. PubMed PMC

Laemmli UK (1970) Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4. Nature 227: 680–685. PubMed

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403–410. PubMed

Ausubel A, Brent R, Kingston RE, Moore DD, Seidman JG, et al... (1998) Current Protocols in Molecular Biology. New York: John Wiley & Sons.

Find record

Citation metrics

Loading data ...

Archiving options

Loading data ...