Control of immune ligands by members of a cytomegalovirus gene expansion suppresses natural killer cell activation

. 2017 Feb 10 ; 6 () : . [epub] 20170210

Jazyk angličtina Země Anglie, Velká Británie Médium electronic

Typ dokumentu časopisecké články, práce podpořená grantem, Research Support, N.I.H., Extramural

Perzistentní odkaz   https://www.medvik.cz/link/pmid28186488

Grantová podpora
G9827961 Medical Research Council - United Kingdom
MR/P001602/1 Medical Research Council - United Kingdom
WT090323MA Wellcome Trust - United Kingdom
MC_UU_12014/12 Medical Research Council - United Kingdom
G0901682 Medical Research Council - United Kingdom
HCRW_HS-14-11 HCRW_ - United Kingdom
K01 DK098285 NIDDK NIH HHS - United States
100140 Wellcome Trust - United Kingdom
MC_UU_12014/3 Medical Research Council - United Kingdom
MR/L018373/1 Medical Research Council - United Kingdom
G0700142 Medical Research Council - United Kingdom
MR/L008734/1 Medical Research Council - United Kingdom
108070/Z/15/Z Wellcome Trust - United Kingdom
G1000236 Medical Research Council - United Kingdom
WT101835 Wellcome Trust - United Kingdom
Wellcome Trust - United Kingdom

The human cytomegalovirus (HCMV) US12 family consists of ten sequentially arranged genes (US12-21) with poorly characterized function. We now identify novel natural killer (NK) cell evasion functions for four members: US12, US14, US18 and US20. Using a systematic multiplexed proteomics approach to quantify ~1300 cell surface and ~7200 whole cell proteins, we demonstrate that the US12 family selectively targets plasma membrane proteins and plays key roles in regulating NK ligands, adhesion molecules and cytokine receptors. US18 and US20 work in concert to suppress cell surface expression of the critical NKp30 ligand B7-H6 thus inhibiting NK cell activation. The US12 family is therefore identified as a major new hub of immune regulation.

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Brandt CS, Baratin M, Yi EC, Kennedy J, Gao Z, Fox B, Haldeman B, Ostrander CD, Kaifu T, Chabannon C, Moretta A, West R, Xu W, Vivier E, Levin SD. The B7 family member B7-H6 is a tumor cell ligand for the activating natural killer cell receptor NKp30 in humans. The Journal of Experimental Medicine. 2009;206:1495–1503. doi: 10.1084/jem.20090681. PubMed DOI PMC

Bronzini M, Luganini A, Dell'Oste V, De Andrea M, Landolfo S, Gribaudo G. The US16 gene of human Cytomegalovirus is required for efficient viral infection of endothelial and epithelial cells. Journal of Virology. 2012;86:6875–6888. doi: 10.1128/JVI.06310-11. PubMed DOI PMC

Carrara G, Saraiva N, Gubser C, Johnson BF, Smith GL. Six-transmembrane topology for golgi anti-apoptotic protein (GAAP) and bax inhibitor 1 (BI-1) provides model for the transmembrane bax inhibitor-containing motif (TMBIM) family. Journal of Biological Chemistry. 2012;287:15896–15905. doi: 10.1074/jbc.M111.336149. PubMed DOI PMC

Cavaletto N, Luganini A, Gribaudo G. Inactivation of the human Cytomegalovirus US20 gene hampers productive viral replication in endothelial cells. Journal of Virology. 2015;89:11092–11106. doi: 10.1128/JVI.01141-15. PubMed DOI PMC

Chee MS, Bankier AT, Beck S, Bohni R, Brown CM, Cerny R, Horsnell T, Hutchison CA, Kouzarides T, Martignetti JA. Analysis of the protein-coding content of the sequence of human Cytomegalovirus strain AD169. Current Topics in Microbiology and Immunology. 1990;154:125–169. doi: 10.1007/978-3-642-74980-3_6. PubMed DOI

Correia DV, Fogli M, Hudspeth K, da Silva MG, Mavilio D, Silva-Santos B. Differentiation of human peripheral blood vδ1+ T cells expressing the natural cytotoxicity receptor NKp30 for recognition of lymphoid leukemia cells. Blood. 2011;118:992–1001. doi: 10.1182/blood-2011-02-339135. PubMed DOI

Costa-Pereira AP, Tininini S, Strobl B, Alonzi T, Schlaak JF, Is'harc H, Gesualdo I, Newman SJ, Kerr IM, Poli V. Mutational switch of an IL-6 response to an interferon-gamma-like response. PNAS. 2002;99:8043–8047. doi: 10.1073/pnas.122236099. PubMed DOI PMC

Cox J, Mann M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nature Biotechnology. 2008;26:1367–1372. doi: 10.1038/nbt.1511. PubMed DOI

Cox J, Matic I, Hilger M, Nagaraj N, Selbach M, Olsen JV, Mann M. A practical guide to the MaxQuant computational platform for SILAC‐based quantitative proteomics. Nature Protocols. 2009;4:698–705.. doi: 10.1038/nprot.2009.36. PubMed DOI

Croft M, Benedict CA, Ware CF. Clinical targeting of the TNF and TNFR superfamilies. Nature Reviews Drug Discovery. 2013;12:147–168. doi: 10.1038/nrd3930. PubMed DOI PMC

Das S, Pellett PE. Members of the HCMV US12 family of predicted heptaspanning membrane proteins have unique intracellular distributions, including association with the cytoplasmic virion assembly complex. Virology. 2007;361:263–273. doi: 10.1016/j.virol.2006.11.019. PubMed DOI

Davison AJ, Dargan DJ, Stow ND. Fundamental and accessory systems in herpesviruses. Antiviral Research. 2002;56:1–11. doi: 10.1016/S0166-3542(02)00107-9. PubMed DOI

Davison AJ, Dolan A, Akter P, Addison C, Dargan DJ, Alcendor DJ, McGeoch DJ, Hayward GS. The human Cytomegalovirus genome revisited: comparison with the chimpanzee Cytomegalovirus genome. Journal of General Virology. 2003;84:17–28. doi: 10.1099/vir.0.18606-0. PubMed DOI

Davison AJ, Holton M, Dolan A, Dargan DJ, Gatherer D, Hayward GS. Comparitive genomics of primate cytomegaloviruses. In: Reddehase M. J, editor. Cytomegaloviruses: From Molecular Pathogenesis to Intervention. Norwich, UK: Caister Academic Press; 2013. p. 1906.

Dennis G, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA. DAVID: database for annotation, visualization, and integrated discovery. Genome Biology. 2003;4:60. doi: 10.1186/gb-2003-4-9-r60. PubMed DOI

Dolan A, Cunningham C, Hector RD, Hassan-Walker AF, Lee L, Addison C, Dargan DJ, McGeoch DJ, Gatherer D, Emery VC, Griffiths PD, Sinzger C, McSharry BP, Wilkinson GW, Davison AJ. Genetic content of wild-type human Cytomegalovirus. Journal of General Virology. 2004;85:1301–1312. doi: 10.1099/vir.0.79888-0. PubMed DOI

Dunn W, Chou C, Li H, Hai R, Patterson D, Stolc V, Zhu H, Liu F. Functional profiling of a human Cytomegalovirus genome. PNAS. 2003;100:14223–14228. doi: 10.1073/pnas.2334032100. PubMed DOI PMC

Elde NC, Child SJ, Eickbush MT, Kitzman JO, Rogers KS, Shendure J, Geballe AP, Malik HS. Poxviruses deploy genomic accordions to adapt rapidly against host antiviral defenses. Cell. 2012;150:831–841. doi: 10.1016/j.cell.2012.05.049. PubMed DOI PMC

Fielding CA, Aicheler R, Stanton RJ, Wang EC, Han S, Seirafian S, Davies J, McSharry BP, Weekes MP, Antrobus PR, Prod'homme V, Blanchet FP, Sugrue D, Cuff S, Roberts D, Davison AJ, Lehner PJ, Wilkinson GW, Tomasec P. Two novel human Cytomegalovirus NK cell evasion functions target MICA for lysosomal degradation. PLoS Pathogens. 2014;10:e1004058. doi: 10.1371/journal.ppat.1004058. PubMed DOI PMC

Filée J. Route of NCLDV evolution: the genomic accordion. Current Opinion in Virology. 2013;3:595–599. doi: 10.1016/j.coviro.2013.07.003. PubMed DOI

Gurczynski SJ, Das S, Pellett PE. Deletion of the human Cytomegalovirus US17 gene increases the ratio of genomes per infectious unit and alters regulation of immune and endoplasmic reticulum stress response genes at early and late times after infection. Journal of Virology. 2014;88:2168–2182. doi: 10.1128/JVI.02704-13. PubMed DOI PMC

Hai R, Chu A, Li H, Umamoto S, Rider P, Liu F. Infection of human Cytomegalovirus in cultured human gingival tissue. Virology Journal. 2006;3:84. doi: 10.1186/1743-422X-3-84. PubMed DOI PMC

Harwardt T, Lukas S, Zenger M, Reitberger T, Danzer D, Übner T, Munday DC, Nevels M, Paulus C. Human Cytomegalovirus Immediate-Early 1 protein rewires upstream STAT3 to downstream STAT1 signaling switching an IL6-Type to an IFNγ-Like response. PLoS Pathogens. 2016;12:e1005748. doi: 10.1371/journal.ppat.1005748. PubMed DOI PMC

Hassan NJ, Barclay AN, Brown MH. Frontline: optimal T cell activation requires the engagement of CD6 and CD166. European Journal of Immunology. 2004;34:930–940. doi: 10.1002/eji.200424856. PubMed DOI

Holzerlandt R, Orengo C, Kellam P, Albà MM. Identification of new herpesvirus gene homologs in the human genome. Genome Research. 2002;12:1739–1748. doi: 10.1101/gr.334302. PubMed DOI PMC

Hsu JL, van den Boomen DJ, Tomasec P, Weekes MP, Antrobus R, Stanton RJ, Ruckova E, Sugrue D, Wilkie GS, Davison AJ, Wilkinson GW, Lehner PJ. Plasma membrane profiling defines an expanded class of cell surface proteins selectively targeted for degradation by HCMV US2 in cooperation with UL141. PLoS Pathogens. 2015;11:e1004811. doi: 10.1371/journal.ppat.1004811. PubMed DOI PMC

Huang daW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols. 2009;4:44–57. doi: 10.1038/nprot.2008.211. PubMed DOI

Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villén J, Haas W, Sowa ME, Gygi SP. A tissue-specific atlas of mouse protein phosphorylation and expression. Cell. 2010;143:1174–1189. doi: 10.1016/j.cell.2010.12.001. PubMed DOI PMC

Kanneganti TD, Lamkanfi M, Kim YG, Chen G, Park JH, Franchi L, Vandenabeele P, Núñez G. Pannexin-1-mediated recognition of bacterial molecules activates the cryopyrin inflammasome independent of Toll-like receptor signaling. Immunity. 2007;26:433–443. doi: 10.1016/j.immuni.2007.03.008. PubMed DOI

Lafarge X, Merville P, Cazin MC, Bergé F, Potaux L, Moreau JF, Déchanet-Merville J. Cytomegalovirus infection in transplant recipients resolves when circulating gammadelta T lymphocytes expand, suggesting a protective antiviral role. The Journal of Infectious Diseases. 2001;184:533–541. doi: 10.1086/322843. PubMed DOI

Lee GH, Kim HR, Chae HJ. Bax inhibitor-1 regulates the expression of P450 2E1 through enhanced lysosome activity. The International Journal of Biochemistry & Cell Biology. 2012;44:600–611. doi: 10.1016/j.biocel.2011.12.017. PubMed DOI

Lesniewski M, Das S, Skomorovska-Prokvolit Y, Wang FZ, Pellett PE. Primate Cytomegalovirus US12 gene family: a distinct and diverse clade of seven-transmembrane proteins. Virology. 2006;354:286–298. doi: 10.1016/j.virol.2006.06.035. PubMed DOI

Matta J, Baratin M, Chiche L, Forel JM, Cognet C, Thomas G, Farnarier C, Piperoglou C, Papazian L, Chaussabel D, Ugolini S, Vély F, Vivier E. Induction of B7-H6, a ligand for the natural killer cell-activating receptor NKp30, in inflammatory conditions. Blood. 2013;122:394–404. doi: 10.1182/blood-2013-01-481705. PubMed DOI

McAlister GC, Russell JD, Rumachik NG, Hebert AS, Syka JE, Geer LY, Westphall MS, Pagliarini DJ, Coon JJ. Analysis of the acidic proteome with negative electron-transfer dissociation mass spectrometry. Analytical Chemistry. 2012;84:2875–2882. doi: 10.1021/ac203430u. PubMed DOI PMC

McSharry BP, Jones CJ, Skinner JW, Kipling D, Wilkinson GW. Human telomerase reverse transcriptase-immortalized MRC-5 and HCA2 human fibroblasts are fully permissive for human Cytomegalovirus. Journal of General Virology. 2001;82:855–863. doi: 10.1099/0022-1317-82-4-855. PubMed DOI

Merville P, Déchanet J, Bergé F, Bone-Mane G, Taupin J, Michel P, Joly P, Bonneville M, Potaux L, Moreau J. Cytomegalovirus infection in kidney allograft recipients is followed by a prolonged expansion of gammadelta T lymphocytes. Transplantation Proceedings. 2000;32:357–359. doi: 10.1016/S0041-1345(99)00978-1. PubMed DOI

Murrell I, Wilkie GS, Davison AJ, Statkute E, Fielding CA, Tomasec P, Wilkinson GW, Stanton RJ. Genetic stability of bacterial artificial Chromosome-Derived human Cytomegalovirus during culture in vitro. Journal of Virology. 2016;90:3929–3943. doi: 10.1128/JVI.02858-15. PubMed DOI PMC

Park JS, Svetkauskaite D, He Q, Kim JY, Strassheim D, Ishizaka A, Abraham E. Involvement of toll-like receptors 2 and 4 in cellular activation by high mobility group box 1 protein. Journal of Biological Chemistry. 2004;279:7370–7377. doi: 10.1074/jbc.M306793200. PubMed DOI

Pease BN, Huttlin EL, Jedrychowski MP, Talevich E, Harmon J, Dillman T, Kannan N, Doerig C, Chakrabarti R, Gygi SP, Chakrabarti D. Global analysis of protein expression and phosphorylation of three stages of plasmodium falciparum intraerythrocytic development. Journal of Proteome Research. 2013;12:4028–4045. doi: 10.1021/pr400394g. PubMed DOI PMC

Prod'homme V, Griffin C, Aicheler RJ, Wang ECY, McSharry BP, Rickards CR, Stanton RJ, Borysiewicz LK, Lopez-Botet M, Wilkinson GWG, Tomasec P. The human Cytomegalovirus MHC class I homolog UL18 inhibits LIR-1+ but activates LIR-1- NK cells. The Journal of Immunology. 2007;178:4473–4481. doi: 10.4049/jimmunol.178.7.4473. PubMed DOI PMC

Prod'homme V, Sugrue DM, Stanton RJ, Nomoto A, Davies J, Rickards CR, Cochrane D, Moore M, Wilkinson GW, Tomasec P. Human Cytomegalovirus UL141 promotes efficient downregulation of the natural killer cell activating ligand CD112. Journal of General Virology. 2010;91:2034–2039. doi: 10.1099/vir.0.021931-0. PubMed DOI PMC

Rojas-Rivera D, Hetz C. TMBIM protein family: ancestral regulators of cell death. Oncogene. 2015;34:269–280. doi: 10.1038/onc.2014.6. PubMed DOI

Rolle A, Mousavi-Jazi M, Eriksson M, Odeberg J, Soderberg-Naucler C, Cosman D, Karre K, Cerboni C. Effects of human Cytomegalovirus infection on ligands for the activating NKG2D receptor of NK cells: up-regulation of UL16-Binding protein (ULBP)1 and ULBP2 is counteracted by the viral UL16 protein. The Journal of Immunology. 2003;171:902–908. doi: 10.4049/jimmunol.171.2.902. PubMed DOI

Sijmons S, Thys K, Mbong Ngwese M, Van Damme E, Dvorak J, Van Loock M, Li G, Tachezy R, Busson L, Aerssens J, Van Ranst M, Maes P. High-throughput analysis of human Cytomegalovirus genome diversity highlights the widespread occurrence of gene-disrupting mutations and pervasive recombination. Journal of Virology. 2015:7673–7695. doi: 10.1128/JVI.00578-15. PubMed DOI PMC

Smith W, Tomasec P, Aicheler R, Loewendorf A, Nemčovičová I, Wang EC, Stanton RJ, Macauley M, Norris P, Willen L, Ruckova E, Nomoto A, Schneider P, Hahn G, Zajonc DM, Ware CF, Wilkinson GW, Benedict CA. Human Cytomegalovirus glycoprotein UL141 targets the TRAIL death receptors to thwart host innate antiviral defenses. Cell Host & Microbe. 2013;13:324–335. doi: 10.1016/j.chom.2013.02.003. PubMed DOI PMC

Stanton R, McSharry B, Armstrong M, Tomasec P, Wilkinson G. Re-engineering adenovirus vector systems to enable high-throughput analyses of gene function. BioTechniques. 2008;45:659–668. doi: 10.2144/000112993. PubMed DOI

Stanton RJ, Baluchova K, Dargan DJ, Cunningham C, Sheehy O, Seirafian S, McSharry BP, Neale ML, Davies JA, Tomasec P, Davison AJ, Wilkinson GW. Reconstruction of the complete human Cytomegalovirus genome in a BAC reveals RL13 to be a potent inhibitor of replication. Journal of Clinical Investigation. 2010;120:3191–3208. doi: 10.1172/JCI42955. PubMed DOI PMC

Stern-Ginossar N, Weisburd B, Michalski A, Le VT, Hein MY, Huang SX, Ma M, Shen B, Qian SB, Hengel H, Mann M, Ingolia NT, Weissman JS. Decoding human cytomegalovirus. Science. 2012;338:1088–1093. doi: 10.1126/science.1227919. PubMed DOI PMC

Timms RT, Duncan LM, Tchasovnikarova IA, Antrobus R, Smith DL, Dougan G, Weekes MP, Lehner PJ. Haploid genetic screens identify an essential role for PLP2 in the downregulation of novel plasma membrane targets by viral E3 ubiquitin ligases. PLoS Pathogens. 2013;9:e1003772. doi: 10.1371/journal.ppat.1003772. PubMed DOI PMC

Ting L, Rad R, Gygi SP, Haas W. MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics. Nature Methods. 2011;8:937–940. doi: 10.1038/nmeth.1714. PubMed DOI PMC

Tomasec P, Wang EC, Davison AJ, Vojtesek B, Armstrong M, Griffin C, McSharry BP, Morris RJ, Llewellyn-Lacey S, Rickards C, Nomoto A, Sinzger C, Wilkinson GW. Downregulation of natural killer cell-activating ligand CD155 by human Cytomegalovirus UL141. Nature Immunology. 2005;6:181–188. doi: 10.1038/ni1156. PubMed DOI PMC

Vizcaíno JA, Csordas A, del-Toro N, Dianes JA, Griss J, Lavidas I, Mayer G, Perez-Riverol Y, Reisinger F, Ternent T, Xu QW, Wang R, Hermjakob H. 2016 update of the PRIDE database and its related tools. Nucleic Acids Research. 2016;44:D447–D456. doi: 10.1093/nar/gkv1145. PubMed DOI PMC

Vizcaíno JA, Deutsch EW, Wang R, Csordas A, Reisinger F, Ríos D, Dianes JA, Sun Z, Farrah T, Bandeira N, Binz PA, Xenarios I, Eisenacher M, Mayer G, Gatto L, Campos A, Chalkley RJ, Kraus HJ, Albar JP, Martinez-Bartolomé S, Apweiler R, Omenn GS, Martens L, Jones AR, Hermjakob H. ProteomeXchange provides globally coordinated proteomics data submission and dissemination. Nature Biotechnology. 2014;32:223–226. doi: 10.1038/nbt.2839. PubMed DOI PMC

Wang S, Zhu G, Chapoval AI, Dong H, Tamada K, Ni J, Chen L. Costimulation of T cells by B7-H2, a B7-like molecule that binds ICOS. Blood. 2000;96:2808–2813. PubMed

Weekes MP, Tan SY, Poole E, Talbot S, Antrobus R, Smith DL, Montag C, Gygi SP, Sinclair JH, Lehner PJ. Latency-associated degradation of the MRP1 drug transporter during latent human Cytomegalovirus infection. Science. 2013;340:199–202. doi: 10.1126/science.1235047. PubMed DOI PMC

Weekes MP, Tomasec P, Huttlin EL, Fielding CA, Nusinow D, Stanton RJ, Wang EC, Aicheler R, Murrell I, Wilkinson GW, Lehner PJ, Gygi SP. Quantitative temporal viromics: an approach to investigate host-pathogen interaction. Cell. 2014;157:1460–1472. doi: 10.1016/j.cell.2014.04.028. PubMed DOI PMC

Wilkinson GWG, Aicheler RJ, Wang ECY. Natural Killer Cells and Human Cytomegalovirus. In: Reddehase M, editor. Cytomegaloviruses: From Molecular Pathogenesis to Intervention. Caister Academic Press; 2013. pp. 172–190.

Witherden DA, Verdino P, Rieder SE, Garijo O, Mills RE, Teyton L, Fischer WH, Wilson IA, Havran WL. The junctional adhesion molecule JAML is a costimulatory receptor for epithelial gammadelta T cell activation. Science. 2010;329:1205–1210. doi: 10.1126/science.1192698. PubMed DOI PMC

Yamaji T, Nishikawa K, Hanada K. Transmembrane BAX inhibitor motif containing (TMBIM) family proteins perturbs a trans-Golgi network enzyme, Gb3 synthase, and reduces Gb3 biosynthesis. Journal of Biological Chemistry. 2010;285:35505–35518. doi: 10.1074/jbc.M110.154229. PubMed DOI PMC

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