Noncoding RNA Expression and Targeted Next-Generation Sequencing Distinguish Tubulocystic Renal Cell Carcinoma (TC-RCC) from Other Renal Neoplasms
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
29056573
DOI
10.1016/j.jmoldx.2017.09.002
PII: S1525-1578(17)30201-5
Knihovny.cz E-zdroje
- MeSH
- diferenciální diagnóza MeSH
- karcinom z renálních buněk diagnóza genetika patologie MeSH
- lidé MeSH
- mikro RNA genetika metabolismus MeSH
- mutace genetika MeSH
- nádory ledvin diagnóza genetika patologie MeSH
- nekódující RNA genetika metabolismus MeSH
- regulace genové exprese u nádorů * MeSH
- reprodukovatelnost výsledků MeSH
- stanovení celkové genové exprese MeSH
- vysoce účinné nukleotidové sekvenování metody MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- mikro RNA MeSH
- nekódující RNA MeSH
Tubulocystic renal cell carcinoma (TC-RCC) is a rare recently described renal neoplasm characterized by gross, microscopic, and immunohistochemical differences from other renal tumor types and was recently classified as a distinct entity. However, this distinction remains controversial particularly because some genetic studies suggest a close relationship with papillary RCC (PRCC). The molecular basis of this disease remains largely unexplored. We therefore performed noncoding (nc) RNA/miRNA expression analysis and targeted next-generation sequencing mutational profiling on 13 TC-RCC cases (11 pure, two mixed TC-RCC/PRCC) and compared with other renal neoplasms. The expression profile of miRNAs and other ncRNAs in TC-RCC was distinct and validated 10 differentially expressed miRNAs by quantitative RT-PCR, including miR-155 and miR-34a, that were significantly down-regulated compared with PRCC cases (n = 22). With the use of targeted next-generation sequencing we identified mutations in 14 different genes, most frequently (>60% of TC-RCC cases) in ABL1 and PDFGRA genes. These mutations were present in <5% of clear cell RCC, PRCC, or chromophobe RCC cases (n > 600) of The Cancer Genome Atlas database. In summary, this study is by far the largest molecular study of TC-RCC cases and the first to investigate either ncRNA expression or their genomic profile. These results add molecular evidence that TC-RCC is indeed a distinct entity from PRCC and other renal neoplasms.
Department of Pathology Charles University Hospital Plzen Czech Republic
Department of Pathology Mexican Oncology Hospital Mexico City Mexico
Department of Pathology Riga Stradins University Riga Latvia
Molecular Oncology Group of Biodonostia Research Institute San Sebastian Spain
Citace poskytuje Crossref.org
Current Concepts of Non-Coding RNAs in the Pathogenesis of Non-Clear Cell Renal Cell Carcinoma