Affinity switching of the LEDGF/p75 IBD interactome is governed by kinase-dependent phosphorylation
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, Research Support, N.I.H., Extramural, práce podpořená grantem, Research Support, U.S. Gov't, Non-P.H.S.
Grantová podpora
R00 CA187565
NCI NIH HHS - United States
PubMed
29997176
PubMed Central
PMC6065015
DOI
10.1073/pnas.1803909115
PII: 1803909115
Knihovny.cz E-zdroje
- Klíčová slova
- LEDGF/p75, disordered proteins, leukemia, phosphorylation, protein–protein interactions,
- MeSH
- adaptorové proteiny signální transdukční genetika metabolismus MeSH
- aminokyselinové motivy MeSH
- fosforylace genetika MeSH
- histonlysin-N-methyltransferasa genetika metabolismus MeSH
- HIV-integrasa genetika metabolismus MeSH
- HIV enzymologie genetika MeSH
- lidé MeSH
- mediátorový komplex - podjednotka 1 genetika metabolismus MeSH
- nádorové buněčné linie MeSH
- protoonkogenní protein MLL genetika metabolismus MeSH
- transkripční faktory genetika metabolismus MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Research Support, N.I.H., Extramural MeSH
- Research Support, U.S. Gov't, Non-P.H.S. MeSH
- Názvy látek
- adaptorové proteiny signální transdukční MeSH
- histonlysin-N-methyltransferasa MeSH
- HIV-integrasa MeSH
- KMT2A protein, human MeSH Prohlížeč
- MED1 protein, human MeSH Prohlížeč
- mediátorový komplex - podjednotka 1 MeSH
- protoonkogenní protein MLL MeSH
- PSIP1 protein, human MeSH Prohlížeč
- transkripční faktory MeSH
Lens epithelium-derived growth factor/p75 (LEDGF/p75, or PSIP1) is a transcriptional coactivator that tethers other proteins to gene bodies. The chromatin tethering function of LEDGF/p75 is hijacked by HIV integrase to ensure viral integration at sites of active transcription. LEDGF/p75 is also important for the development of mixed-lineage leukemia (MLL), where it tethers the MLL1 fusion complex at aberrant MLL targets, inducing malignant transformation. However, little is known about how the LEDGF/p75 protein interaction network is regulated. Here, we obtained solution structures of the complete interfaces between the LEDGF/p75 integrase binding domain (IBD) and its cellular binding partners and validated another binding partner, Mediator subunit 1 (MED1). We reveal that structurally conserved IBD-binding motifs (IBMs) on known LEDGF/p75 binding partners can be regulated by phosphorylation, permitting switching between low- and high-affinity states. Finally, we show that elimination of IBM phosphorylation sites on MLL1 disrupts the oncogenic potential of primary MLL1-rearranged leukemic cells. Our results demonstrate that kinase-dependent phosphorylation of MLL1 represents a previously unknown oncogenic dependency that may be harnessed in the treatment of MLL-rearranged leukemia.
Center for Cancer Epigenetics The University of Texas MD Anderson Cancer Center Houston TX 77030
Center for Precision Environmental Health Baylor College of Medicine Houston TX 77030
Dan L Duncan Comprehensive Cancer Center Baylor College of Medicine Houston TX 77030
Department of Cell Biology Faculty of Science Charles University 116 36 Prague 1 Czech Republic
Department of Molecular and Cellular Biology Baylor College of Medicine Houston TX 77030
Institute of Microbiology of the Czech Academy of Sciences 142 20 Prague 4 Czech Republic
Institute of Molecular Genetics of the Czech Academy of Sciences 142 20 Prague 4 Czech Republic
Molecular Virology and Gene Therapy KU Leuven 3000 Leuven Belgium
Molecular Virology and Gene Therapy KU Leuven 3000 Leuven Belgium;
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Dhayalan A, et al. The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation. J Biol Chem. 2010;285:26114–26120. PubMed PMC
Eidahl JO, et al. Structural basis for high-affinity binding of LEDGF PWWP to mononucleosomes. Nucleic Acids Res. 2013;41:3924–3936. PubMed PMC
Okuda H, et al. MLL fusion proteins link transcriptional coactivators to previously active CpG-rich promoters. Nucleic Acids Res. 2014;42:4241–4256. PubMed PMC
Pradeepa MM, Sutherland HG, Ule J, Grimes GR, Bickmore WA. Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing. PLoS Genet. 2012;8:e1002717. PubMed PMC
Cherepanov P, Devroe E, Silver PA, Engelman A. Identification of an evolutionarily conserved domain in human lens epithelium-derived growth factor/transcriptional co-activator p75 (LEDGF/p75) that binds HIV-1 integrase. J Biol Chem. 2004;279:48883–48892. PubMed
Ciuffi A, et al. A role for LEDGF/p75 in targeting HIV DNA integration. Nat Med. 2005;11:1287–1289. PubMed
Maertens G, et al. LEDGF/p75 is essential for nuclear and chromosomal targeting of HIV-1 integrase in human cells. J Biol Chem. 2003;278:33528–33539. PubMed
Schrijvers R, et al. LEDGF/p75-independent HIV-1 replication demonstrates a role for HRP-2 and remains sensitive to inhibition by LEDGINs. PLoS Pathog. 2012;8:e1002558. PubMed PMC
Shun MC, et al. LEDGF/p75 functions downstream from preintegration complex formation to effect gene-specific HIV-1 integration. Genes Dev. 2007;21:1767–1778. PubMed PMC
Christ F, et al. Rational design of small-molecule inhibitors of the LEDGF/p75-integrase interaction and HIV replication. Nat Chem Biol. 2010;6:442–448. PubMed
Bartholomeeusen K, et al. Differential interaction of HIV-1 integrase and JPO2 with the C terminus of LEDGF/p75. J Mol Biol. 2007;372:407–421. PubMed
Maertens GN, Cherepanov P, Engelman A. Transcriptional co-activator p75 binds and tethers the Myc-interacting protein JPO2 to chromatin. J Cell Sci. 2006;119:2563–2571. PubMed
Chan TS, Hawkins C, Krieger JR, McGlade CJ, Huang A. JPO2/CDCA7L and LEDGF/p75 are novel mediators of PI3K/AKT signaling and aggressive phenotypes in medulloblastoma. Cancer Res. 2016;76:2802–2812. PubMed
Bartholomeeusen K, et al. Lens epithelium-derived growth factor/p75 interacts with the transposase-derived DDE domain of PogZ. J Biol Chem. 2009;284:11467–11477. PubMed PMC
Hughes S, Jenkins V, Dar MJ, Engelman A, Cherepanov P. Transcriptional co-activator LEDGF interacts with Cdc7-activator of S-phase kinase (ASK) and stimulates its enzymatic activity. J Biol Chem. 2010;285:541–554. PubMed PMC
Yokoyama A, Cleary ML. Menin critically links MLL proteins with LEDGF on cancer-associated target genes. Cancer Cell. 2008;14:36–46. PubMed PMC
Tesina P, et al. Multiple cellular proteins interact with LEDGF/p75 through a conserved unstructured consensus motif. Nat Commun. 2015;6:7968. PubMed
Cermáková K, et al. Validation and structural characterization of the LEDGF/p75-MLL interface as a new target for the treatment of MLL-dependent leukemia. Cancer Res. 2014;74:5139–5151. PubMed
Stessman HAF, et al. Disruption of POGZ is associated with intellectual disability and autism spectrum disorders. Am J Hum Genet. 2016;98:541–552. PubMed PMC
Homsy J, et al. De novo mutations in congenital heart disease with neurodevelopmental and other congenital anomalies. Science. 2015;350:1262–1266. PubMed PMC
Huang A, et al. Identification of a novel c-Myc protein interactor, JPO2, with transforming activity in medulloblastoma cells. Cancer Res. 2005;65:5607–5619. PubMed
Tkachuk DC, Kohler S, Cleary ML. Involvement of a homolog of Drosophila trithorax by 11q23 chromosomal translocations in acute leukemias. Cell. 1992;71:691–700. PubMed
Yu M, et al. MLL tandem duplication and multiple splicing in adult acute myeloid leukemia with normal karyotype. Leukemia. 1996;10:774–780. PubMed
Krivtsov AV, Armstrong SA. MLL translocations, histone modifications and leukaemia stem-cell development. Nat Rev Cancer. 2007;7:823–833. PubMed
Zeisig BB, et al. Hoxa9 and Meis1 are key targets for MLL-ENL-mediated cellular immortalization. Mol Cell Biol. 2004;24:617–628. PubMed PMC
Méreau H, et al. Impairing MLL-fusion gene-mediated transformation by dissecting critical interactions with the lens epithelium-derived growth factor (LEDGF/p75) Leukemia. 2013;27:1245–1253. PubMed
Cherepanov P, et al. Solution structure of the HIV-1 integrase-binding domain in LEDGF/p75. Nat Struct Mol Biol. 2005;12:526–532. PubMed
Booth V, Koth CM, Edwards AM, Arrowsmith CH. Structure of a conserved domain common to the transcription factors TFIIS, elongin A, and CRSP70. J Biol Chem. 2000;275:31266–31268. PubMed
Huang J, et al. The same pocket in menin binds both MLL and JUND but has opposite effects on transcription. Nature. 2012;482:542–546. PubMed PMC
Liu BA, et al. The SH2 domain-containing proteins in 21 species establish the provenance and scope of phosphotyrosine signaling in eukaryotes. Sci Signal. 2011;4:ra83. PubMed PMC
Koch CA, Anderson D, Moran MF, Ellis C, Pawson T. SH2 and SH3 domains: Elements that control interactions of cytoplasmic signaling proteins. Science. 1991;252:668–674. PubMed
Adey NB, et al. Threonine phosphorylation of the MMAC1/PTEN PDZ binding domain both inhibits and stimulates PDZ binding. Cancer Res. 2000;60:35–37. PubMed
Tzivion G, Avruch J. 14-3-3 proteins: Active cofactors in cellular regulation by serine/threonine phosphorylation. J Biol Chem. 2002;277:3061–3064. PubMed
Diebold M-L, et al. The structure of an Iws1/Spt6 complex reveals an interaction domain conserved in TFIIS, Elongin A and Med26. EMBO J. 2010;29:3979–3991. PubMed PMC
McDonald SM, Close D, Xin H, Formosa T, Hill CP. Structure and biological importance of the Spn1-Spt6 interaction, and its regulatory role in nucleosome binding. Mol Cell. 2010;40:725–735. PubMed PMC
Hornbeck PV, et al. PhosphoSitePlus: A comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse. Nucleic Acids Res. 2012;40:D261–D270. PubMed PMC
Mertins P, et al. Integrated proteomic analysis of post-translational modifications by serial enrichment. Nat Methods. 2013;10:634–637. PubMed PMC
Dephoure N, et al. A quantitative atlas of mitotic phosphorylation. Proc Natl Acad Sci USA. 2008;105:10762–10767. PubMed PMC
Mertins P, et al. NCI CPTAC Proteogenomics connects somatic mutations to signalling in breast cancer. Nature. 2016;534:55–62. PubMed PMC
Hunter T. Why nature chose phosphate to modify proteins. Philos Trans R Soc Lond B Biol Sci. 2012;367:2513–2516. PubMed PMC
Kornberg RD. Mediator and the mechanism of transcriptional activation. Trends Biochem Sci. 2005;30:235–239. PubMed
Mu JJ, et al. A proteomic analysis of ataxia telangiectasia-mutated (ATM)/ATM-Rad3-related (ATR) substrates identifies the ubiquitin-proteasome system as a regulator for DNA damage checkpoints. J Biol Chem. 2007;282:17330–17334. PubMed
Pinna LA. Protein kinase CK2: A challenge to canons. J Cell Sci. 2002;115:3873–3878. PubMed
Sarno S, et al. Selectivity of 4,5,6,7-tetrabromobenzotriazole, an ATP site-directed inhibitor of protein kinase CK2 (‘casein kinase-2’) FEBS Lett. 2001;496:44–48. PubMed
De Rijck J, Bartholomeeusen K, Ceulemans H, Debyser Z, Gijsbers R. High-resolution profiling of the LEDGF/p75 chromatin interaction in the ENCODE region. Nucleic Acids Res. 2010;38:6135–6147. PubMed PMC
Jeronimo C, Robert F. The mediator complex: At the nexus of RNA polymerase II transcription. Trends Cell Biol. 2017;27:765–783. PubMed
Cherepanov P, Ambrosio AL, Rahman S, Ellenberger T, Engelman A. Structural basis for the recognition between HIV-1 integrase and transcriptional coactivator p75. Proc Natl Acad Sci USA. 2005;102:17308–17313. PubMed PMC
Ortega CE, Seidner Y, Dominguez I. Mining CK2 in cancer. PLoS One. 2014;9:e115609. PubMed PMC
Daugaard M, et al. LEDGF (p75) promotes DNA-end resection and homologous recombination. Nat Struct Mol Biol. 2012;19:803–810. PubMed
Zhou Y, Paull TT. DNA-dependent protein kinase regulates DNA end resection in concert with Mre11-Rad50-Nbs1 (MRN) and ataxia telangiectasia-mutated (ATM) J Biol Chem. 2013;288:37112–37125. PubMed PMC
Neal JA, et al. Inhibition of homologous recombination by DNA-dependent protein kinase requires kinase activity, is titratable, and is modulated by autophosphorylation. Mol Cell Biol. 2011;31:1719–1733. PubMed PMC
Convery E, et al. Inhibition of homologous recombination by variants of the catalytic subunit of the DNA-dependent protein kinase (DNA-PKcs) Proc Natl Acad Sci USA. 2005;102:1345–1350. PubMed PMC
Seldin DC, et al. CK2 as a positive regulator of Wnt signalling and tumourigenesis. Mol Cell Biochem. 2005;274:63–67. PubMed
Dominguez I, Sonenshein GE, Seldin DC. Protein kinase CK2 in health and disease: CK2 and its role in Wnt and NF-kappaB signaling: Linking development and cancer. Cell Mol Life Sci. 2009;66:1850–1857. PubMed PMC
Trembley JH, Wang G, Unger G, Slaton J, Ahmed K. Protein kinase CK2 in health and disease: CK2: A key player in cancer biology. Cell Mol Life Sci. 2009;66:1858–1867. PubMed PMC
Ruzzene M, Pinna LA. Addiction to protein kinase CK2: A common denominator of diverse cancer cells? Biochim Biophys Acta. 2010;1804:499–504. PubMed
Montenarh M. Protein kinase CK2 and angiogenesis. Adv Clin Exp Med. 2014;23:153–158. PubMed
Feng D, et al. Protein kinase CK2 is a regulator of angiogenesis in endometriotic lesions. Angiogenesis. 2012;15:243–252. PubMed
Kramerov AA, et al. Inhibition of protein kinase CK2 suppresses angiogenesis and hematopoietic stem cell recruitment to retinal neovascularization sites. Mol Cell Biochem. 2008;316:177–186. PubMed PMC
McCubrey JA, et al. Targeting survival cascades induced by activation of Ras/Raf/MEK/ERK, PI3K/PTEN/Akt/mTOR and Jak/STAT pathways for effective leukemia therapy. Leukemia. 2008;22:708–722. PubMed
Steelman LS, et al. Contributions of the Raf/MEK/ERK, PI3K/PTEN/Akt/mTOR and Jak/STAT pathways to leukemia. Leukemia. 2008;22:686–707. PubMed
Gray GK, McFarland BC, Rowse AL, Gibson SA, Benveniste EN. Therapeutic CK2 inhibition attenuates diverse prosurvival signaling cascades and decreases cell viability in human breast cancer cells. Oncotarget. 2014;5:6484–6496. PubMed PMC
Zheng Y, et al. Targeting protein kinase CK2 suppresses prosurvival signaling pathways and growth of glioblastoma. Clinical Cancer Res. 2013;19:6484–6494. PubMed PMC
Zheng Y, et al. A CK2-dependent mechanism for activation of the JAK-STAT signaling pathway. Blood. 2011;118:156–166. PubMed PMC
Schevzov G, et al. Regulation of cell proliferation by ERK and signal-dependent nuclear translocation of ERK is dependent on Tm5NM1-containing actin filaments. Mol Biol Cell. 2015;26:2475–2490. PubMed PMC
Duncan JS, et al. A peptide-based target screen implicates the protein kinase CK2 in the global regulation of caspase signaling. Sci Signal. 2011;4:ra30. PubMed
Siddiqui-Jain A, et al. CX-4945, an orally bioavailable selective inhibitor of protein kinase CK2, inhibits prosurvival and angiogenic signaling and exhibits antitumor efficacy. Cancer Res. 2010;70:10288–10298. PubMed
Perea SE, et al. CIGB-300, a novel proapoptotic peptide that impairs the CK2 phosphorylation and exhibits anticancer properties both in vitro and in vivo. Mol Cell Biochem. 2008;316:163–167. PubMed
Buontempo F, et al. Therapeutic targeting of CK2 in acute and chronic leukemias. Leukemia. 2018;32:1–10. PubMed PMC
Basnet H, et al. Tyrosine phosphorylation of histone H2A by CK2 regulates transcriptional elongation. Nature. 2014;516:267–271. PubMed PMC
Renshaw PS, et al. Sequence-specific assignment and secondary structure determination of the 195-residue complex formed by the Mycobacterium tuberculosis proteins CFP-10 and ESAT-6. J Biomol NMR. 2004;30:225–226. PubMed
Veverka V, et al. NMR assignment of the mTOR domain responsible for rapamycin binding. J Biomol NMR. 2006;36(Suppl 1):3. PubMed
Herrmann T, Güntert P, Wüthrich K. Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J Mol Biol. 2002;319:209–227. PubMed
Veverka V, et al. Structural characterization of the interaction of mTOR with phosphatidic acid and a novel class of inhibitor: Compelling evidence for a central role of the FRB domain in small molecule-mediated regulation of mTOR. Oncogene. 2008;27:585–595. PubMed
Case DA, et al. 2014 Amber 14 reference manual. Available at ambermd.org/doc12/Amber14.pdf.
Roe DR, Cheatham TE., 3rd PTRAJ and CPPTRAJ: Software for processing and analysis of molecular dynamics trajectory data. J Chem Theory Comput. 2013;9:3084–3095. PubMed
The Impact of Lens Epithelium-Derived Growth Factor p75 Dimerization on Its Tethering Function
Multivalency of nucleosome recognition by LEDGF
A ubiquitous disordered protein interaction module orchestrates transcription elongation
PDB
6EMO, 6EMR, 5YI9