Rapidly Display Glycan Symbols in 3D Structures: 3D-SNFG in LiteMol
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, Research Support, N.I.H., Extramural, práce podpořená grantem
Grantová podpora
104948
Wellcome Trust - United Kingdom
U01 CA207824
NCI NIH HHS - United States
- Klíčová slova
- 3D-SNFG, LiteMol, SNFG, carbohydrate, glycan, glycoprotein, oligosaccharide, structure, symbol nomenclature for glycans, visualization,
- MeSH
- molekulární konformace * MeSH
- polysacharidy chemie MeSH
- sacharidy chemie MeSH
- software * MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Research Support, N.I.H., Extramural MeSH
- Názvy látek
- polysacharidy MeSH
- sacharidy MeSH
The representation of carbohydrates in 3D space using symbols is a powerful visualization method, but such representations are lacking in currently available visualization software. The work presented here allows researchers to display carbohydrate 3D structures as 3D-SNFG symbols using LiteMol from a web browser (e.g., v.litemol.org/?loadFromCS=5T3X ). Any PDB ID can be substituted at the end of the URL. Alternatively, the user may enter a PDB ID or upload a structure. LiteMol is available at https://v.litemol.org and automatically depicts any carbohydrate residues as 3D-SNFG symbols. To embed LiteMol in a webpage, visit https://github.com/dsehnal/LiteMol .
Complex Carbohydrate Research Center University of Georgia Athens Georgia 30602 United States
Protein Data Bank in Europe Wellcome Genome Campus Hinxton Cambridgeshire CB10 1SD United Kingdom
Citace poskytuje Crossref.org
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures
High-performance macromolecular data delivery and visualization for the web
PDBe: improved findability of macromolecular structure data in the PDB
