PDBe: improved findability of macromolecular structure data in the PDB
Jazyk angličtina Země Velká Británie, Anglie Médium print
Typ dokumentu časopisecké články, práce podpořená grantem
Grantová podpora
Wellcome Trust - United Kingdom
104948
Wellcome Trust - United Kingdom
BB/G022577/1
Biotechnology and Biological Sciences Research Council - United Kingdom
PubMed
31691821
PubMed Central
PMC7145656
DOI
10.1093/nar/gkz990
PII: 5613681
Knihovny.cz E-zdroje
- MeSH
- databáze proteinů * MeSH
- konformace proteinů MeSH
- shluková analýza MeSH
- software * MeSH
- správnost dat MeSH
- uživatelské rozhraní počítače MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Evropa MeSH
The Protein Data Bank in Europe (PDBe), a founding member of the Worldwide Protein Data Bank (wwPDB), actively participates in the deposition, curation, validation, archiving and dissemination of macromolecular structure data. PDBe supports diverse research communities in their use of macromolecular structures by enriching the PDB data and by providing advanced tools and services for effective data access, visualization and analysis. This paper details the enrichment of data at PDBe, including mapping of RNA structures to Rfam, and identification of molecules that act as cofactors. PDBe has developed an advanced search facility with ∼100 data categories and sequence searches. New features have been included in the LiteMol viewer at PDBe, with updated visualization of carbohydrates and nucleic acids. Small molecules are now mapped more extensively to external databases and their visual representation has been enhanced. These advances help users to more easily find and interpret macromolecular structure data in order to solve scientific problems.
10.1093/nar/gkz853 PubMed
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