Crystal structure of the cold-adapted haloalkane dehalogenase DpcA from Psychrobacter cryohalolentis K5
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články
Grantová podpora
CZ.1.05/2.1.00/01.0024
Ministerstvo Školství, Mládeže a Tělovýchovy
CZ.1.05/2.1.00/01.0001
Ministerstvo Školství, Mládeže a Tělovýchovy
CZ.02.1.01/0.0/0.0/15_003/0000441
Ministerstvo Školství, Mládeže a Tělovýchovy
17-24321S
Grantová Agentura České Republiky
PubMed
31045561
PubMed Central
PMC6497103
DOI
10.1107/s2053230x19002796
PII: S2053230X19002796
Knihovny.cz E-zdroje
- Klíčová slova
- Psychrobacter cryohalolentis, X-ray diffraction, haloalkane dehalogenase, psychrophiles, structural analysis, α/β-hydrolase,
- MeSH
- bakteriální proteiny chemie genetika metabolismus MeSH
- Escherichia coli genetika metabolismus MeSH
- exprese genu MeSH
- genetické vektory chemie metabolismus MeSH
- halogenované uhlovodíky chemie metabolismus MeSH
- hydrolasy chemie genetika metabolismus MeSH
- interakční proteinové domény a motivy MeSH
- klonování DNA MeSH
- konformace proteinů, alfa-helix MeSH
- konformace proteinů, beta-řetězec MeSH
- krystalografie rentgenová MeSH
- nízká teplota MeSH
- Psychrobacter chemie enzymologie MeSH
- rekombinantní fúzní proteiny chemie genetika metabolismus MeSH
- sekvence aminokyselin MeSH
- simulace molekulového dockingu MeSH
- strukturní homologie proteinů MeSH
- substrátová specifita MeSH
- termodynamika MeSH
- vazba proteinů MeSH
- vazebná místa MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- 1-bromohexane MeSH Prohlížeč
- bakteriální proteiny MeSH
- haloalkane dehalogenase MeSH Prohlížeč
- halogenované uhlovodíky MeSH
- hydrolasy MeSH
- rekombinantní fúzní proteiny MeSH
Haloalkane dehalogenases (HLDs) convert halogenated aliphatic pollutants to less toxic compounds by a hydrolytic mechanism. Owing to their broad substrate specificity and high enantioselectivity, haloalkane dehalogenases can function as biosensors to detect toxic compounds in the environment or can be used for the production of optically pure compounds. Here, the structural analysis of the haloalkane dehalogenase DpcA isolated from the psychrophilic bacterium Psychrobacter cryohalolentis K5 is presented at the atomic resolution of 1.05 Å. This enzyme exhibits a low temperature optimum, making it attractive for environmental applications such as biosensing at the subsurface environment, where the temperature typically does not exceed 25°C. The structure revealed that DpcA possesses the shortest access tunnel and one of the most widely open main tunnels among structural homologs of the HLD-I subfamily. Comparative analysis revealed major differences in the region of the α4 helix of the cap domain, which is one of the key determinants of the anatomy of the tunnels. The crystal structure of DpcA will contribute to better understanding of the structure-function relationships of cold-adapted enzymes.
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