Reptodigitus Chapmanii (Nostocales, Hapalosiphonaceae) Gen. Nov.: A Unique Nostocalean (Cyanobacteria) Genus Based on a Polyphasic Approach1
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články
PubMed
31837017
DOI
10.1111/jpy.12954
Knihovny.cz E-zdroje
- Klíčová slova
- 16S rDNA, cyanobacteria, phylogeny, systematics,
- MeSH
- DNA bakterií genetika MeSH
- ekosystém * MeSH
- fylogeneze MeSH
- RNA ribozomální 16S genetika MeSH
- sekvenční analýza DNA MeSH
- sinice * genetika MeSH
- Publikační typ
- časopisecké články MeSH
- Geografické názvy
- Florida MeSH
- Názvy látek
- DNA bakterií MeSH
- RNA ribozomální 16S MeSH
The Nostocales is a monophyletic, heterocytous lineage of cyanobacteria capable of akinete production and division in multiple planes, depending upon family-level clade. While present in a variety of ecosystems, the diversity of the Nostocales has been poorly elucidated. Due to environmentally -induced phenotypic plasticity, morphology alone is often insufficient to determine the true phylogenetic placement of these taxa. In order to bridge this gap, taxonomists now employ the polyphasic approach, combining methods such as morphological analysis, phylogenetic analysis based on DNA sequence and genetic identity based on ribosomal genes, and secondary structure of the 16S-23S ITS and 16S rRNA gene sequences, as well as ecological characterization. Using this combined approach, a new genus and species (Reptodigitus chapmanii gen. et sp. nov.) isolated from the St. Johns River (Jacksonville, Florida, USA) within the Nostocales is herein described. Phylogenetic analyses place this taxon within the Hapalosiphonaceae, sister to the clade containing Fischerella, Hapalosiphon, and Westiellopsis. The 16S-23S ITS secondary folding structure analysis also supports the erection of this new genus.
Department of Biology John Carroll University University Heights Ohio 44118 USA
Department of Biology University of North Florida Jacksonville Florida 32224 USA
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Boyer, S. L., Flechtner, V. R. & Johansen, J. R. 2001. Is the 16S-23S rRNA internal transcribed spacer region a good tool for use in molecular systematics and population genetics? A case study in cyanobacteria. Mol. Biol. Evol. 18:1057-69.
Boyer, S. L., Johansen, J. R. & Flechtner, V. R. 2002. Characterization of the 16S rRNA gene and associated 16S-23S ITS region in Microcoleus: evidence for the presence of cryptic species in desert crusts. J. Phycol. 38:1222-35.
Carmichael, W. 1986. Isolation, culture, and toxicity testing of toxic freshwater cyanobacteria (blue-green algae). In Shilov, V. [Ed.] Fundamental Research in Homogenous Catalysis, Vol. 3. Gordon and Breach, New York, NY, USA, pp. 1249-62.
Casamatta, D. A., Johansen, J. R., Vis, M. L. & Broadwater, S. T. 2005. Molecular and morphological characterization of ten polar and near-polar strains within the Oscillatoriales (Cyanobacteria). J. Phycol. 41:421-38.
Casamatta, D. A., Stanic, D., Gantar, M. & Richardson, L. L. 2012. Characterization of Roseofilum repaotaenium (Oscillatoriales, Cyanobacteria) gen. et sp. nov. isolated from Caribbean black band disease. Phycologia 51:489-99.
Castenholz, R. W. 1969. The thermophilic cyanophytes of Iceland and the upper temperature limit. J. Phycol. 5:360-8.
Castenholz, R. W. 1989. Subsection V. Order Stigonematales. In Staley, J. T., Bryant, M. P., Pfennig, N. & Holt, J. G. [Eds.] Bergey's Manual of Systematic Bacteriology, vol. 3. Williams and Wilkins, Baltimore, MD, USA, pp. 1794-9.
Coutinho, F., Tschoeke, D. A., Thompson, F. & Thompson, C. 2016. Comparative genomics of Synechococcus and proposal of the new genus Parasynechococcus. Peer J. 4:e1522.
Cullings, K. W. 1992. Design and testing of a plant-specific PCR primer for ecological and evolutionary studies. Mol. Ecol. 1:233-40.
Doyle, J. J. & Doyle, J. L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bull. 19:11-5.
Engene, N., Rottacker, E. C., Kaštovský, J., Byrum, T., Choi, H., Ellisman, M. H., Komárek, J. & Gerwick, W. H. 2012. Moorea producens gen. nov., sp. nov. and Moorea bouillonii comb. nov., tropical marine cyanobacteria rich in bioactive secondary metabolites. Int. J. Syst. Evol. Microbiol. 62:1171-8.
Finsinger, K., Scholz, I., Serrano, A., Morales, S., Uribe-Lorio, L., Mora, M., Sittenfeld, A., Weckesser, J. & Hess, W. R. 2008. Characterization of true-branching cyanobacteria from geothermal sites and hot springs of Costa Rica. Environ. Microbiol. 10:460-73.
Golubič, S., Hernandez-Marine, M. & Hoffmann, L. 1996. Developmental aspects of branching in filamentous Cyanophyta/Cyanobacteria. Algol. Stud. 83:303-29.
González-Resendiz, L., Johansen, J. R., León-Tejera, H., Sanchéz, L., Segal-Kischinevsky, C., Escobar-Sánchez, V. & Morales, M. 2019. A bridge too far in naming species: a total evidence approach does not support recognition of four species in Desertifilum (Cyanobacteria). J. Phycol. 55:898-911.
Graham, J. E., Wilcox, L. W. & Graham, L. E. 2008. Algae, 2nd Ed. Benjamin Cummings, San Francisco, CA, USA, 720 pp.
Gugger, M. F. & Hoffmann, L. 2004. Polyphyly of true branching cyanobacteria (Stigonematales). Int. J. Syst. Evol. Microbiol. 54:349-57.
Hoffmann, L. & Castenholz, R. W. 2001. Subsection V (formerly Stigonematales Geitler 1925). In Boone, D. R. & Castenholz, R. W. [Eds.] Bergey's Manual of Systematic Bacteriology. Springer, New York, pp. 589-99.
Johansen, J. R. & Casamatta, D. A. 2005. Recognizing cyanobacterial diversity through adoption of a new species paradigm. Algolog. Stud. 117:71-93.
Kaštovský, J. & Johansen, J. R. 2008. Mastigocladus laminosus (Stigonematales, Cyanobacteria): phylogenetic relationship of strains from thermal springs to soil-inhabiting genera of the order and taxonomic implications for the genus. Phycologia 47:307-20.
Komárek, J. 2010. Recent changes (2008) in cyanobacteria taxonomy based on a combination of molecular background with phenotype and ecological consequences (genus and species concept). Hydrobiologia 639:245-59.
Komárek, J. 2013. Süβwasserflora von Mitteleuropa Teil 3: Heterocytous Genera. Gustav Fischer, Stuttgart, Germany, 1130 pp.
Komárek, J. & Anagnostidis, K. 2005. Süßwasserflora von Mitteleuropa Teil 2: Oscillatoriales. Spektrum Akademischer Verlag, ???, 768 pp.
Komárek, J., Kaštovský, J., Mareš, J. & Johansen, J. R. 2014. Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 204, using a polyphasic approach. Preslia 86:295-335.
Komárek, J. & Mareš, J. 2012. An update to modern taxonomy (2011) of freshwater planktic heterocystous cyanobacteria. Hydrobiologia 698:327-51.
Lamprinou, V., Skaraki, K., Kotoulas, G., Economou-Amilli, A. & Pantazidou, A. 2012. Toxopsis calypsus gen. nov., sp. nov. (Cyanobacteria, Nostocales) from cave “Francthi”, Peloponnese, Greece: a morphological and molecular evaluation. Int. J. Syst. Evol. Microbiol. 62:2870-7.
Mareš, J., Johansen, J. R., Hauer, T., Zima, J. Jr, Ventura, S., Cuzman, O., Tiribilli, B. & Kaštovský, J. 2019. Taxonomic resolution of the genus Cyanothece (Chroococcales, Cyanobacteria), with a treatment on Gloeothece and three new genera, Crocosphaera, Rippkaea, and Zehria. J. Phycol. 55:578-610.
Miller, S. R., Castenholz, R. W. & Pedersen, D. 2007. Phylogeography of the thermophilic cyanobacterium Mastigocladus laminosus. Applied Env. Microbiol. 73:4751-9.
Miscoe, L. H., Johansen, J. R., Vaccarino, M. A., Pietrasiak, N. & Sherwood, A. R. 2016. Novel cyanobacteria from caves on Kauai, Hawaii. Bibliotheca Phycologica 120:75-152.
Nübel, U., Garcia-Pichel, F. & Muyzer, G. 1997. PCR primers to amplify 16S rRNA genes from cyanobacteria. Appl. Environ. Microbiol. 63:3327-32.
Osorio-Santos, K., Pietrasiak, N., Bohunická, M., Miscoe, L., Kovacik, L., Martin, M. P. & Johansen, J. R. 2014. Seven new species of Oculatella (Pseudanabaenales, Cyanobacteria): taxonomically recognizing cryptic diversification. Eur. J. Phycol. 49:450-70.
Perkerson, R. B., Johansen, J. R., Kovácik, L., Brand, J., Kaštovský, J. & Casamatta, D. A. 2011. A unique pseudanabaenalean (Cyanobacteria) genus Nodosilinea gen. nov. based on morphological and molecular data. J. Phycol. 47:1397-412.
Reháková, K., Johansen, J. R., Casamatta, D. A., Xuesong, L. & Vincent, J. 2007. Morphological and molecular characterization of selected desert soil cyanobacteria: three species new to science including Mojavia pulchra gen. et sp. nov. Phycologia 46:481-502.
Rippka, R. & Herdman, M. 1992. Catalogue of Strains. Pasteur Culture Collection of Cyanobacterial Strains in Axenic Culture. Institut Pasteur, Paris.
Saber, A. A., Cantonati, M., Mareš, J., Anesi, A. & Guella, G. 2017. Polyphasic characterization of Westiellopsis prolifica (Hapalosiphonaceae, Cyanobacteria) from the El-Farafra Oasis (Western Desert, Egypt). Phycologia 56:697-709.
Soe, K. M., Yokoyama, A., Yokoyama, J. & Hara, Y. 2011. Morphological and genetic diversity of the thermophilic cyanobacterium, Mastigocladus laminosus (Stigonematales, Cyanobacteria) from Japan and Myanmar. Phycol. Res. 59:135-42.
Stackebrandt, E. & Ebbers, J. 2006. Taxonomic parameters revisited, tarnished gold standards. Microbiol. Today 33:152-5.
Stackebrandt, E. & Goebel, B. M. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-9.
Stanier, R. Y., Kunisawa, R., Mandel, M. & Cohen-Bazire, G. 1971. Purification and properties of unicellular blue-green algae (Order Chroococcales). Bacteriol. Rev. 35:171-205.
Thompson, C. C., Silva, G. G., Vieira, N. M., Edwards, R., Vicente, A. C. & Thompson, F. L. 2013. Genomic taxonomy of the genus Prochlorococcus. Microbial. Ecol. 66:752-62.
Turland, N. J., Wiersema, J. H., Barrie, F. R., Greuter, W., Hawksworth, D. L., Herendeen, P. S., Knapp, S. et al. 2018. International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress, Shenzhen, China, July 2017. Regnum Vegetabile, 159. Koeltz, Glashütten, 254 pp.
Walter, J. M., Coutinho, F. H., Dutilh, B. E., Swings, J., Thompson, F. L. & Thompson, C. C. 2017. Ecogenomics and taxonomy of Cyanobacteria Phylum. Frontiers Microbiol. 8:2132.
Wilmotte, A., der Auwera, G. V. & De Wachter, R. 1993. Structure of the 16S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF (‘Mastigocladus laminosus HTF’) strain PCC7518 and phylogenetic analysis. FEBS Lett. 317:96-100.
Yarza, P., Yilmaz, P., Pruesse, E., Glöckner, F. O., Ludwig, W., Schleifer, K., Whitman, W. B., Euzéby, J., Amann, R. & Roselló-Móra, R. 2014. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nature Rev. Microbiol. 12:635-45.
Zuker, M., Mathews, D. H. & Turner, D. H. 1999. Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. In Barciszewski, J. & Clark, B. C. F. [Eds.] RNA biochemistry and biotechnology NATO ASI Series. Kluwer Academic Publishers, Norwell, MA, USA, pp. 11-43.
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