DNA barcode library for European Gelechiidae (Lepidoptera) suggests greatly underestimated species diversity

. 2020 ; 921 () : 141-157. [epub] 20200324

Status PubMed-not-MEDLINE Jazyk angličtina Země Bulharsko Médium electronic-ecollection

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid32256152

For the first time, a nearly complete barcode library for European Gelechiidae is provided. DNA barcode sequences (COI gene - cytochrome c oxidase 1) from 751 out of 865 nominal species, belonging to 105 genera, were successfully recovered. A total of 741 species represented by specimens with sequences ≥ 500bp and an additional ten species represented by specimens with shorter sequences were used to produce 53 NJ trees. Intraspecific barcode divergence averaged only 0.54% whereas distance to the Nearest-Neighbour species averaged 5.58%. Of these, 710 species possessed unique DNA barcodes, but 31 species could not be reliably discriminated because of barcode sharing or partial barcode overlap. Species discrimination based on the Barcode Index System (BIN) was successful for 668 out of 723 species which clustered from minimum one to maximum 22 unique BINs. Fifty-five species shared a BIN with up to four species and identification from DNA barcode data is uncertain. Finally, 65 clusters with a unique BIN remained unidentified to species level. These putative taxa, as well as 114 nominal species with more than one BIN, suggest the presence of considerable cryptic diversity, cases which should be examined in future revisionary studies.

Zobrazit více v PubMed

Bidzilya O. (2005a) A review of the genus Metanarsia Staudinger, 1871 (Gelechiidae). Nota lepidopterologica 27: 273–297.

Bidzilya O. (2005b) A review of the genus Athrips (Lepidoptera, Gelechiidae) in the Palaearctic region. Deutsche Entomologische Zeitschrift 52: 3–72.

Bidzilya O, Karsholt O. (2015) Revision of the genus Istrianis Meyrick, 1918 (Lepidoptera, Gelechiidae) with special regard to the Palaearctic region. Zootaxa 4059: 401–445. 10.11646/zootaxa.4059.3.1 PubMed DOI

deWaard JR, Ivanova NV, Hajibabaei M, Hebert PDN. (2008) Assembling DNA barcodes: Analytical Protocols. In: Martin C. (Ed.) Methods in Molecular Biology:Environmental Genetics.Humana Press, Totowa, NJ, 275–293. 10.1007/978-1-59745-548-0_15 PubMed DOI

Dincă V, Montagud S, Talavera G, Hernández-Roldán J, Munguira ML, García-Barros E, Hebert PDN, Vila R. (2015) DNA barcode reference library for Iberian butterflies enables a continental-scale preview of potential cryptic diversity. Scientific Reports 5: 12395. 10.1038/srep12395 PubMed DOI PMC

Elsner G, Huemer P, Tokár Z. (1999) Gelechiidae Mitteleuropas. Verlag F. Slamka, Bratislava, 208 pp.

Hausmann A, Godfray HCJ, Huemer P, Mutanen M, Rougerie R, van Nieukerken EJ, Ratnasingham S, Hebert PDN. (2013) Genetic patterns in European geometrid moths revealed by the Barcode Index Number (BIN) system. PLoS ONE 8(12): e84518. 10.1371/journal.pone.0084518 PubMed DOI PMC

Huemer P, Elsner G, Karsholt O. (2013) Review of the Eulamproteswilkella species group based on morphology and DNA barcodes, with descriptions of new taxa (Lepidoptera, Gelechiidae). Zootaxa 3746: 69–100. 10.11646/zootaxa.3746.1.3 PubMed DOI

Huemer P, Hebert PDN. (2011) Cryptic diversity and phylogeography of high alpine Sattleria – a case study combining DNA barcodes and morphology (Lepidoptera: Gelechiidae). Zootaxa 2981: 1–22. 10.11646/zootaxa.2981.1.1 DOI

Huemer P, Karsholt O. (1999) Gelechiidae I (Gelechiinae: Teleiodini, Gelechiini). In: Huemer P, Karsholt O, Nuss M, Microlepidoptera of Europe. Vol. 3. Apollo Books, Stenstrup, 356 pp.

Huemer P, Karsholt O. (2002) A review of the genus Acompsia Hübner, 1825, with description of new species (Gelechiidae). Nota lepidopterologica 25(2/3): 109–151.

Huemer P, Karsholt O. (2010) Gelechiidae II (Gelechiinae: Gnorimoschemini). In: Huemer P, Karsholt O, Nuss M, Microlepidoptera of Europe. Vol. 6. Apollo Books, Stenstrup, 586 pp. 10.1163/9789004260986 DOI

Huemer P, Karsholt O. (2018) Revision of the genus Megacraspedus Zeller, 1839, a challenging taxonomic tightrope of species delimitation (Lepidoptera, Gelechiidae). ZooKeys 800: 1–278. 10.3897/zookeys.800.26292 PubMed DOI PMC

Huemer P, Karsholt O. (2020) Commented checklist of European Gelechiidae (Lepidoptera). ZooKeys 921: 65–140. 10.3897/zookeys.921.49197 PubMed DOI PMC

Huemer P, Karsholt O, Mutanen M. (2014) DNA barcoding as a screening tool for cryptic diversity: an example from Caryocolum, with description of a new species (Lepidoptera, Gelechiidae). ZooKeys 404: 91–111. 10.3897/zookeys.404.7234 PubMed DOI PMC

Huemer P, Mutanen M. (2012) Taxonomy of spatially disjunct alpine Teleiopsisalbifemorella s. lat. (Lepidoptera: Gelechiidae) revealed by molecular data and morphology – how many species are there? Zootaxa 3580: 1–23. 10.11646/zootaxa.3580.1.1 DOI

Huemer P, Sattler K. (1995) A taxonomic revision of Palaearctic Chionodes (Lepidoptera: Gelechiidae). Beiträge zur Entomologie 45(1): 3–108.

Huemer P, Timossi G. (2014) Sattleria revisited: unexpected cryptic diversity on the Balkan Peninsula and in the south-eastern Alps (Lepidoptera: Gelechiidae). Zootaxa 3780: 282–296. 10.11646/zootaxa.3780.2.4 PubMed DOI

Janzen DH, Hallwachs W. (2016) DNA barcoding the Lepidoptera inventory of a large complex tropical conserved wildland, Area de Conservacion Guanacaste, northwestern Costa Rica. Genome 59(9): 641–660. 10.1139/gen-2016-0005 PubMed DOI

Kaila L, Mutanen M, Nyman T. (2011) Phylogeny of the mega-diverse Gelechioidea (Lepidoptera): Adaptations and determinants of success. Molecular Phylogenetics and Evolution 61: 801–809. 10.1016/j.ympev.2011.08.016 PubMed DOI

Karsholt O. (2004–2019) Gelechiidae. In: Karsholt O, van Nieukerken EJ (Eds) Lepidoptera. Fauna Europaea [last update of Gelechiidae: version 2.4 January 2011]. https://fauna-eu.org [Accessed on: 2019-10-14]

Karsholt O, Mutanen M, Lee S, Kaila L. (2013) A molecular analysis of the Gelechiidae (Lepidoptera, Gelechioidea) with an interpretative grouping of its taxa. Systematic Entomology 38: 334–348. 10.1111/syen.12006 DOI

Karsholt O, Rutten T. (2005) The genus Bryotropha Heinemann in the western Palaearctic (Lepidoptera: Gelechiidae). Tijdschrift voor Entomologie 148: 77–207. 10.1163/22119434-900000168 DOI

Karsholt O, Šumpich J. (2015) A review of the genus Nothris Hübner, 1825, with description of new species (Lepidoptera: Gelechiidae). Zootaxa 4059: 471–498. 10.11646/zootaxa.4059.3.1 PubMed DOI

Kekkonen M, Mutanen M, Kaila L, Nieminen M, Hebert PDN. (2015) Delineating species with barcodes: a case of taxon dependent method performance in moths. PloS ONE 10(4): e0122481. 10.1371/journal.pone.0122481 PubMed DOI PMC

Kumar S, Stecher G, Li M, Knyaz C, Tamura K. (2018) MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution 35: 1547–1549. 10.1093/molbev/msy096 PubMed DOI PMC

Landry J-F, Nazari V, Bidzylia O, Huemer P, Karsholt O. (2017) Review of the genus Agonochaetia Povolný (Lepidoptera, Gelechiidae), and description of a new genus and species from the Canary Islands. Zootaxa 4300: 451–485. 10.11646/zootaxa.4300.4.1 DOI

Li H, Sattler K. (2012) A taxonomic revision of the genus Mesophleps Hübner, 1825 (Lepidoptera: Gelechiidae). Zootaxa 3373: 1–82. 10.11646/zootaxa.3373.1.1 DOI

Mally R, Huemer P, Nuss M. (2018) Deep intraspecific DNA barcode splits and hybridisation in the Udeaalpinalis group (Insecta, Lepidoptera, Crambidae)–an integrative revision. ZooKeys 746: 51–90. 10.3897/zookeys.746.22020 PubMed DOI PMC

Müller B, Erlacher S, Hausmann A, Rajaei H, Sihvonen P, Skou P. (2019) Subfamily Ennominae II. In: Hausmann A, Sihvonen P, Rajaei H, Skou P (2019) The Geometrid Moths of Europe. Vol. 6, Part 1. Brill, Leiden/Boston, 562 pp. 10.1163/9789004387485_001 DOI

Mutanen M, Kaila L, Tabell J. (2011) Wide-ranging barcoding aids discovery of one-third increase of species richness in presumably well-investigated moths. Scientific Reports 3: 2901. 10.1038/srep02901 PubMed DOI PMC

Ratnasingham S. (2018) BOLD Barcode of Life Data System, version 4. http://www.boldsystems.org [Accessed on: 2019-10-14]

Ratnasingham S, Hebert PDN. (2007) BOLD: The Barcode of Life Data System (http://www.barcodinglife.org). Molecular Ecology Notes 7: 355–364. 10.1111/j.1471-8286.2007.01678.x PubMed DOI PMC

Ratnasingham S, Hebert PN. (2013) A DNA-based registry for all animal species: the Barcode Index Number (BIN) system. PLoS ONE 8: e66213. 10.1371/journal.pone.0066213 PubMed DOI PMC

Werren JH, Baldo L, Clark ME. (2008) Wolbachia: master manipulators of invertebrate biology. Nature Reviews Microbiology 6: 741–751. 10.1038/nrmicro1969 PubMed DOI

Zahiri R, Lafontaine JD, Schmidt BC, deWaard JR, Zakharov EV, Hebert PDN. (2017) Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America. PLoS ONE 12(6): e0178548. 10.1371/journal.pone.0178548 PubMed DOI PMC

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...