Connecting high-throughput biodiversity inventories: Opportunities for a site-based genomic framework for global integration and synthesis
Jazyk angličtina Země Anglie, Velká Británie Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem, přehledy
PubMed
33432777
PubMed Central
PMC7986105
DOI
10.1111/mec.15797
Knihovny.cz E-zdroje
- Klíčová slova
- DNA metabarcoding, Genomic Observatories, biodiversity assessment, harmonized data generation, high-throughput sequencing,
- MeSH
- biodiverzita * MeSH
- genomika MeSH
- reprodukovatelnost výsledků MeSH
- taxonomické DNA čárové kódování * MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- přehledy MeSH
- Geografické názvy
- Kypr MeSH
High-throughput sequencing (HTS) is increasingly being used for the characterization and monitoring of biodiversity. If applied in a structured way, across broad geographical scales, it offers the potential for a much deeper understanding of global biodiversity through the integration of massive quantities of molecular inventory data generated independently at local, regional and global scales. The universality, reliability and efficiency of HTS data can potentially facilitate the seamless linking of data among species assemblages from different sites, at different hierarchical levels of diversity, for any taxonomic group and regardless of prior taxonomic knowledge. However, collective international efforts are required to optimally exploit the potential of site-based HTS data for global integration and synthesis, efforts that at present are limited to the microbial domain. To contribute to the development of an analogous strategy for the nonmicrobial terrestrial domain, an international symposium entitled "Next Generation Biodiversity Monitoring" was held in November 2019 in Nicosia (Cyprus). The symposium brought together evolutionary geneticists, ecologists and biodiversity scientists involved in diverse regional and global initiatives using HTS as a core tool for biodiversity assessment. In this review, we summarize the consensus that emerged from the 3-day symposium. We converged on the opinion that an effective terrestrial Genomic Observatories network for global biodiversity integration and synthesis should be spatially led and strategically united under the umbrella of the metabarcoding approach. Subsequently, we outline an HTS-based strategy to collectively build an integrative framework for site-based biodiversity data generation.
Aquatic Ecosystem Research Faculty of Biology University of Duisburg Essen Essen Germany
Biology Centre Institute of Entomology Czech Academy of Sciences Ceske Budejovice Czech Republic
Center for Excellence in Animal Evolution and Genetics Chinese Academy of Sciences Kunming China
Centre for Biodiversity Genomics University of Guelph Guelph Canada
Centre for Biodiversity Monitoring Zoological Research Museum Alexander Koenig Bonn Germany
Centre for Water and Environmental Research Essen University of Duisburg Essen Essen Germany
Comparative Plant and Fungal Biology Royal Botanic Gardens London UK
Department of Biogeography Trier University Trier Germany
Department of Bioinformatics and Genetics Swedish Museum of Natural History Stockholm Sweden
Department of Biological Sciences University of Cyprus Nicosia Cyprus
Department of Environment and Agronomy INIA Madrid Spain
Department of Environmental Sciences and Policy University of Milano Milano Italy
Department of Life Sciences Imperial College London London UK
Department of Life Sciences Natural History Museum London UK
Division of Vertebrate Zoology American Museum of Natural History New York USA
Faculty of Science University of South Bohemia Ceske Budejovice Czech Republic
School of Biological Sciences University of East Anglia Norwich UK
School of Environmental Sciences University of Guelph Guelph Canada
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