CLAVATA modulates auxin homeostasis and transport to regulate stem cell identity and plant shape in a moss
Jazyk angličtina Země Anglie, Velká Británie Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
35032334
PubMed Central
PMC9303531
DOI
10.1111/nph.17969
Knihovny.cz E-zdroje
- Klíčová slova
- CLAVATA, CLV-WUS, evo-devo, moss filament identity, physcomitrella, plant stem cell,
- MeSH
- Bryophyta * metabolismus MeSH
- homeostáza MeSH
- kmenové buňky metabolismus MeSH
- kyseliny indoloctové metabolismus MeSH
- mechy * genetika metabolismus MeSH
- proteiny huseníčku * genetika metabolismus MeSH
- regulace genové exprese u rostlin MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- kyseliny indoloctové MeSH
- proteiny huseníčku * MeSH
The CLAVATA pathway is a key regulator of stem cell function in the multicellular shoot tips of Arabidopsis, where it acts via the WUSCHEL transcription factor to modulate hormone homeostasis. Broad-scale evolutionary comparisons have shown that CLAVATA is a conserved regulator of land plant stem cell function, but CLAVATA acts independently of WUSCHEL-like (WOX) proteins in bryophytes. The relationship between CLAVATA, hormone homeostasis and the evolution of land plant stem cell functions is unknown. Here we show that in the moss, Physcomitrella (Physcomitrium patens), CLAVATA affects stem cell activity by modulating hormone homeostasis. CLAVATA pathway genes are expressed in the tip cells of filamentous tissues, regulating cell identity, filament branching, plant spread and auxin synthesis. The receptor-like kinase PpRPK2 plays the major role, and Pprpk2 mutants have abnormal responses to cytokinin, auxin and auxin transport inhibition, and show reduced expression of PIN auxin transporters. We propose a model whereby PpRPK2 modulates auxin gradients in filaments to determine stem cell identity and overall plant form. Our data indicate that CLAVATA-mediated auxin homeostasis is a fundamental property of plant stem cell function, probably exhibited by the last shared common ancestor of land plants.
Centre for Plant Sciences Faculty of Biological Sciences University of Leeds Leeds LS2 9JT UK
School of Biological Sciences University of Bristol 24 Tyndall Avenue Bristol BS8 1TQ UK
Zobrazit více v PubMed
Abas L, Kolb M, Stadlmann J, Janacek DP, Lukic K, Schwechheimer C, Sazanov LA, Mach L, Friml J, Hammes UZ. 2021. Naphthylphthalamic acid associates with and inhibits PIN auxin transporters. Proceedings of the National Academy of Sciences, USA 118: e2020857118. PubMed PMC
Ashton NW, Grimsley NH, Cove DJ. 1979. Analysis of gametophytic development in the moss, Physcomitrella patens, using auxin and cytokinin resistant mutants. Planta 144: 427–435. PubMed
Bennett T, Liu M, Aoyama T, Bierfreund N, Braun M, Coudert Y, Dennis R, O’Connor D, Wang X, White C et al. 2014. Plasma membrane‐targeted PIN proteins drive shoot development in a moss. Current Biology 24: 2776–2785. PubMed PMC
Cammarata J, Farfan CM, Scanlon M, Roeder AHK. 2021. Cytokinin‐CLAVATA crosstalk is an ancient mechanism regulating shoot meristem homeostasis in land plants. BioRXiv doi: 10.1101/2021.08.03.454935. PubMed DOI PMC
Clark SE, Williams RW, Meyerowitz EM. 1997. The CLAVATA1 gene encodes a putative receptor kinase that controls shoot and floral meristem size in Arabidopsis . Cell 89: 575–585. PubMed
Coudert Y, Novák O, Harrison CJ. 2019. A KNOX‐cytokinin regulatory module predates the origin of indeterminate vascular plants. Current Biology 29: 2743–2750. PubMed
Daum G, Medzihradszky A, Suzaki T, Lohmann JU. 2014. A mechanistic framework for noncell autonomous stem cell induction in Arabidopsis . Proceedings of the National Academy of Sciences, USA 111: 14619–14624. PubMed PMC
Demko V, Belova T, Messerer M, Hvidsten TR, Perroud P‐F, Ako AE, Johansen W, Mayer KFX, Olsen O‐A, Lang D. 2021. Calpain DEK1 acts as a developmental switch gatekeeping cell fate transitions. BioRXiv doi: 10.1101/2021.08.25.457637. PubMed DOI PMC
Desai UJ, Pfaffle PK. 1995. Single‐step purification of a thermostable DNA polymerase expressed in Escherichia coli . BioTechniques 19: 780–782. PubMed
Doyle JJ, Doyle JL. 1990. Isolation ofplant DNA from fresh tissue. Focus 12: 39–40.
Fletcher JC. 2018. The CLV‐WUS stem cell signaling pathway: a roadmap to crop yield optimization. Plants 7: 87. PubMed PMC
Fletcher JC, Brand U, Running MP, Simon R, Meyerowitz EM. 1999. Signalling of cell fate decisions by CLAVATA3 in Arabidopsis shoot meristems. Science 283: 1911–1914. PubMed
Geldner N, Friml J, Stierhof YD, Jürgens G, Palme K. 2001. Auxin transport inhibitors block PIN1 cycling and vesicle trafficking. Nature 413: 425–428. PubMed
Goad DM, Zhu C, Kellogg EA. 2017. Comprehensive identification and clustering of CLV3/ESR‐related (CLE) genes in plants finds groups with potentially shared function. New Phytologist 216: 605–616. PubMed
Han S, Hwang I. 2018. Integration of multiple signaling pathways shapes the auxin response. Journal of Experimental Botany 69: 189–200. PubMed
Harrison CJ. 2017. Development and genetics in the evolution of land plant body plans. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences 372: e20150490. PubMed PMC
Hirakawa Y, Fujimoto T, Ishida S, Uchida N, Sawa S, Kiyosue T, Ishizaki K, Nishihama R, Kohchi T, Bowman JL. 2020. Induction of multichotomous branching by CLAVATA peptide in Marchantia polymorpha . Current Biology 30: 3833–3840. PubMed
Ishikawa M, Murata T, Sato Y, Nishiyama T, Hiwatashi Y, Imai A, Kimura M, Sugimoto N, Akita A, Oguri Y et al. 2011. Physcomitrella cyclin‐dependent kinase a links cell cycle reactivation to other cellular changes during reprogramming of leaf cells. Plant Cell 23: 2924–2938. PubMed PMC
Jang G, Dolan L. 2011. Auxin promotes the transition from chloronema to caulonema in moss protonema by positively regulating PpRSL1 and PpRSL2 in Physcomitrella patens . New Phytologist 192: 319–327. PubMed
Kamisugi Y, Cuming AC, Cove DJ. 2005. Parameters determining the efficiency of gene targeting in the moss Physcomitrella patens . Nucleic Acids Research 33: e173–e173. PubMed PMC
Kieber JJ, Schaller GE. 2018. Cytokinin signaling in plant development. Development 145. doi: 10.1242/dev.149344. PubMed DOI
Kondo T, Sawa S, Kinoshita A, Mizuno S, Kakimoto T, Fukuda H, Sakagami Y. 2006. A plant peptide encoded by CLV3 identified by in situ MALDI‐TOF MS analysis. Science 313: 845–848. PubMed
Laux T, Mayer KX, Berger J, Jurgens G. 1996. The WUSCHEL gene is required for shoot and floral meristem integrity in Arabidopsis . Development 122: 87–96. PubMed
Lavy M, Prigge MJ, Tao S, Shain S, Kuo A, Kirchsteiger K, Estelle M. 2016. Constitutive auxin response in physcomitrella reveals complex interactions between Aux/IAA and ARF proteins eLife 5: e13325. PubMed PMC
Lenhard M, Laux T. 2003. Stem cell homeostasis in the Arabidopsis shoot meristem is regulated by intercellular movement of CLAVATA3 and its sequestration by CLAVATA1. Development 130: 3163–3173. PubMed
Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real‐time quantitative PCR and the 2−ΔΔCT method. Methods 25: 402–408. PubMed
Ma Y, Miotk A, Šutiković Z, Ermakova O, Wenzl C, Medzihradszky A, Gaillochet C, Forner J, Utan G, Brackmann K et al. 2019. WUSCHEL acts as an auxin response rheostat to maintain apical stem cells in Arabidopsis . Nature Communications 10: 1–11. PubMed PMC
Menand B, Calder G, Dolan L. 2007a. Both chloronemal and caulonemal cells expand by tip growth in the moss Physcomitrella patens . Journal of Experimental Botany 58: 1843–1850. PubMed
Menand B, Keke Y, Jouannic S, Hoffmann L, Ryan E, Linstead P, Schaefer DG, Dolan L. 2007b. An ancient mechanism controls the development of cells with a rooting function in land plants. Science 316: 1477–1480. PubMed
Novák O, Hényková E, Sairanen I, Kowalczyk M, Pospíšil T, Ljung K. 2012. Tissue specific profiling of the Arabidopsis thaliana auxin metabolome. The Plant Journal 72: 523–536. PubMed
Ogawa M, Shinohara H, Sakagami Y, Matsubayashi Y. 2008. Arabidopsis CLV3 peptide directly binds CLV1 ectodomain. Science 319: 294–294. PubMed
Ohyama K, Shinohara H, Ogawa‐Ohnishi M, Matsubayashi Y. 2009. A glycopeptide regulating stem cell fate in Arabidopsis thaliana . Nature Chemical Biology 5: 578–580. PubMed
Pallakies H, Simon R. 2014. The CLE40 and CRN/CLV2 signaling pathways antagonistically control root meristem growth in Arabidopsis . Molecular Plant 7: 1619–1636. PubMed
Plavskin Y, Nagashima A, Perroud P‐F, Hasebe M, Quatrano RS, Atwal GS, Timmermans MC. 2016. Ancient trans‐acting siRNAs confer robustness and sensitivity onto the auxin response. Developmental Cell 36: 276–289. PubMed PMC
Prigge MJ, Lavy M, Ashton NW, Estelle M. 2010. Physcomitrella patens auxin‐resistant mutants affect conserved elements of an auxin‐signaling pathway. Current Biology 20: 1907–1912. PubMed
Racolta A, Nodine MD, Davies K, Lee C, Rowe S, Velazco Y, Wellington R, Tax FE. 2018. A common pathway of root growth control and response to CLE peptides through two receptor kinases in Arabidopsis . Genetics 208: 687–704. PubMed PMC
Rojo E, Sharma VK, Kovaleva V, Raikhel NV, Fletcher JC. 2002. CLV3 is localized to the extracellular space, where it activates the Arabidopsis CLAVATA stem cell signaling pathway. Plant Cell 14: 969–977. PubMed PMC
Sakakibara K, Reisewitz P, Aoyama T, Friedrich T, Ando S, Sato Y, Tamada Y, Nishiyama T, Hiwatashi Y, Kurata T. 2014. WOX13‐like genes are required for reprogramming of leaf and protoplast cells into stem cells in the moss Physcomitrella patens . Development 141: 1660–1670. PubMed
Schoof H, Lenhard M, Haecker A, Mayer KF, Jurgens G, Laux T. 2000. The stem cell population of Arabidopsis shoot meristems in maintained by a regulatory loop between the CLAVATA and WUSCHEL genes. Cell 100: 635–644. PubMed
von Schwartzenberg K, Fernández Núñez M, Blaschke H, Dobrev PI, Novák O, Motyka V, Strnad M. 2007. Cytokinins in the bryophyte Physcomitrella patens: analyses of activity, distribution, and cytokinin oxidase/dehydrogenase overexpression reveal the role of extracellular cytokinins. Plant Physiology 145: 786–800. PubMed PMC
Somssich M, Je BI, Simon R, Jackson D. 2016. CLAVATA‐WUSCHEL signaling in the shoot meristem. Development 143: 3238–3248. PubMed
Svaçinová J, Novák O, Plačková L, Lenobel R, Holík J, Strnad M, Doležal K. 2012. A new approach for cytokinin isolation from Arabidopsis tissues using miniaturized purification: pipette tip solid‐phase extraction. Plant Methods 8: 1–14. PubMed PMC
Thelander M, Landberg K, Sundberg E. 2018. Auxin‐mediated developmental control in the moss Physcomitrella patens . Journal of Experimental Botany 69: 277–290. PubMed
Thelander M, Landberg K, Sundberg E. 2019. Minimal auxin sensing levels in vegetative moss stem cells revealed by a ratiometric reporter. New Phytologist 224: 775–788. PubMed
Viaene T, Landberg K, Thelander M, Medvecka E, Pederson E, Feraru E, Cooper E, Karimi M, Delwiche C, Ljung K et al. 2014. Directional auxin transport mechanisms in early diverging land plants. Current Biology 24: 2786–2791. PubMed
Whitewoods CD, Cammarata J, Nemec Venza Z, Sang S, Crook AD, Aoyama T, Wang XY, Waller M, Kamisugi Y, Cuming AC et al. 2018. CLAVATA was a genetic novelty for the morphological innovation of 3D growth in land plants. Current Biology 28: 2365–2376. PubMed PMC
Wu C‐C, Li F‐W, Kramer EM. 2019. Large‐scale phylogenomic analysis suggests three ancient superclades of the WUSCHEL‐RELATED HOMEOBOX transcription factor family in plants. PLoS ONE 14: e0223521. PubMed PMC
Yadav RK, Perales M, Jrm G, Girke T, Jönsson H, Reddy GV. 2011. WUSCHEL protein movement mediates stem cell homeostasis in the Arabidopsis shoot apex. Genes & Development 25: 2025–2030. PubMed PMC