Supernumerary Marker Chromosome Identified in Asian Elephant (Elephas maximus)
Status PubMed-not-MEDLINE Jazyk angličtina Země Švýcarsko Médium electronic
Typ dokumentu časopisecké články
Grantová podpora
MZE-RO0518
Ministry of Agriculture
PubMed
36830488
PubMed Central
PMC9952010
DOI
10.3390/ani13040701
PII: ani13040701
Knihovny.cz E-zdroje
- Klíčová slova
- Asian elephant, FISH, NOR, heterochromatin, karyotype, laser microdissection, sSMC, savanna elephant, small supernumerary marker chromosome,
- Publikační typ
- časopisecké články MeSH
We identified a small, supernumerary marker chromosome (sSMC) in two phenotypically normal Asian elephants (Elephas maximus): a female (2n = 57,XX,+mar) and her male offspring (2n = 57,XY,+mar). sSMCs are defined as structurally abnormal chromosomes that cannot be identified by conventional banding analysis since they are usually small and often lack distinct banding patterns. Although current molecular techniques can reveal their origin, the mechanism of their formation is not yet fully understood. We determined the origin of the marker using a suite of conventional and molecular cytogenetic approaches that included (a) G- and C-banding, (b) AgNOR staining, (c) preparation of a DNA clone using laser microdissection of the marker chromosome, (d) FISH with commercially available human painting and telomeric probes, and (e) FISH with centromeric DNA derived from the centromeric regions of a marker-free Asian elephant. Moreover, we present new information on the location and number of NORs in Asian and savanna elephants. We show that the metacentric marker was composed of heterochromatin with NORs at the terminal ends, originating most likely from the heterochromatic region of chromosome 27. In this context, we discuss the possible mechanism of marker formation. We also discuss the similarities between sSMCs and B chromosomes and whether the marker chromosome presented here could evolve into a B chromosome in the future.
Zobrazit více v PubMed
Liehr T., Claussen U., Starke H. Small supernumerary marker chromosomes (sSMC) in humans. Cytogenet. Genome. Res. 2004;107:55–67. doi: 10.1159/000079572. PubMed DOI
Trifonov V., Fluri S., Binkert F., Nandini A., Anderson J., Rodriguez L., Gross M., Kosyakova N., Mkrtchyan H., Ewers E., et al. Complex rearranged small supernumerary marker chromosomes (sSMC), three new cases; evidence for an underestimated entity? Mol. Cytogenet. 2008;15:1–6. doi: 10.1186/1755-8166-1-6. PubMed DOI PMC
Liehr T., Weise A. Frequency of small supernumerary marker chromosomes in prenatal, newborn, developmentally retarded and infertility diagnostics. Int. J. Mol. Med. 2007;19:719–731. doi: 10.3892/ijmm.19.5.719. PubMed DOI
Liehr T. The sSMC Homepage. [(accessed on 14 January 2023)]. Available online: https://cs-tl.de/DB/CA/sSMC/0-Start.html.
Jafari-Ghahfarokhi H., Moradi-Chaleshtori M., Liehr T., Hashemzadeh-Chaleshtori M., Teimori H., Ghasemi-Dehkordi P. Small supernumerary marker chromosomes and their correlation with specific syndromes. Adv. Biomed. Res. 2015;4:140. PubMed PMC
Liehr T. Familial small supernumerary marker chromosomes are predominantly inherited via the maternal line. Genet. Med. 2006;8:459–462. doi: 10.1097/00125817-200607000-00011. PubMed DOI
Paoloni-Giacobino A., Morrisand M.A., Dahoun S.P. Prenatal supernumerary r(16) chromosome characterized by multiprobeFISH with normal pregnancy outcome. Prenat. Diagn. 1998;18:751–756. doi: 10.1002/(SICI)1097-0223(199807)18:7<751::AID-PD312>3.0.CO;2-5. PubMed DOI
Zhou L., Zheng Z., Wu L., Xu C., Wu H., Xu X., Tang S. Molecular delineation of small supernumerary marker chromosomes using a single nucleotide polymorphism array. Mol. Cytogenet. 2020;27:13–19. doi: 10.1186/s13039-020-00486-2. PubMed DOI PMC
Brondum-Nielsen K., Mikkelsen M. A 10-year survey, 1980–1990, of prenatally diagnosed small supernumerary marker chromosomes, identified by FISH analysis. Outcome and follow-up of 14 cases diagnosed in a series of 12,699 prenatal samples. Prenat. Diagn. 1995;15:615–619. doi: 10.1002/pd.1970150705. PubMed DOI
Buckton K.E., Spowart G., Newton M.S., Evans H.J. Forty four probands with an additional “marker” chromosome. Hum. Genet. 1985;69:353–370. doi: 10.1007/BF00291656. PubMed DOI
De Braekeleer M., Dao T.N. Cytogenetic studies in male infertility: A review. Hum. Reprod. 1991;6:245–250. doi: 10.1093/oxfordjournals.humrep.a137315. PubMed DOI
Morel F., Douet-Guilbert N., Le Bris M.J., Amice V., Le Martelot M.T., Roche S., Valéri A., Derrien V., Amice J., De Braekeleer M. Chromosomal abnormalities in couples undergoing intracytoplasmic sperm injection. A study of 370 couples and review of the literature. Int. J. Androl. 2004;27:178–182. doi: 10.1111/j.1365-2605.2004.00472.x. PubMed DOI
Douet-Guilbert N., Marical H., Pinson L., Herry A., Le Bris M.J., Morel F., De Braekeleer M. Characterisation of supernumerary chromosomal markers: A study of 13 cases. Cytogenet. Genome Res. 2007;116:18–23. doi: 10.1159/000097413. PubMed DOI
Wang W., Hu Y., Zhu H., Li J., Zhu R., Wang Y.-P. A case of an infertile male with a small supernumerary marker chromosome negative for M-FISH and containing only heterochromatin. J. Assist. Reprod. Genet. 2009;26:291–295. doi: 10.1007/s10815-009-9310-1. PubMed DOI PMC
Oracova E., Musilova P., Kopecna O., Rybar R., Vozdova M., Vesela K., Rubes J. Sperm and Embryo Analysis in a Carrier of Supernumerary inv dup(15) Marker Chromosome. J. Androl. 2009;30:233–239. doi: 10.2164/jandrol.108.006783. PubMed DOI
Palkopoulou E., Lipson M., Mallick S., Nielsen S., Rohland N., Baleka S., Karpinski E., Ivancevic A.M., To T.-H., Kortschak R.D., et al. A comprehensive genomic history of extinct and living elephants. Proc. Natl. Acad. Sci. USA. 2018;13:115. doi: 10.1073/pnas.1720554115. PubMed DOI PMC
Houck M.L., Kumamoto A.T., Gallagher D.S., Benirschke K. Comparative cytogenetics of the African elephant (Loxodonta africana) and Asiatic elephant (Elephas maximus) Cytogenet. Cell Genet. 2001;93:249–252. doi: 10.1159/000056992. PubMed DOI
Frönicke L., Wienberg J., Stone G., Adams L., Stanyon R. Towards the delineation of the ancestral eutherian genome organization: Comparative genome maps of human and the African elephant (Loxodonta africana) generated by chromosome painting. Proc. Biol. Sci. 2003;270:1331–1340. doi: 10.1098/rspb.2003.2383. PubMed DOI PMC
Yang F., Alkalaeva E.Z., Perelman P.L., Pardini A.T., Harrison W.R., O'Brien P.C.M., Fu B., Graphodatsky A.S., Ferguson-Smith M.A., Robinson T.J. Reciprocal chromosome painting among human, aardvark, and elephant (superorder Afrotheria) reveals the likely eutherian ancestral karyotype. Proc. Natl. Acad. Sci. USA. 2003;100:1062–1066. doi: 10.1073/pnas.0335540100. PubMed DOI PMC
Cernohorska H., Kubickova S., Vahala J., Rubes J. Molecular insights into X; BTA5 chromosome rearrangements in the tribe Antilopini (Bovidae). Cytogenet. Genome Res. 2012;136:188–198. PubMed
Seabright M. A rapid banding technique for human chromosomes. Lancet. 1971;2:971–972. doi: 10.1016/S0140-6736(71)90287-X. PubMed DOI
Sumner A.T. A simple technique for demonstrating centric heterochromatin. Exp. Cell Res. 1972;75:304–306. doi: 10.1016/0014-4827(72)90558-7. PubMed DOI
Goodpasture C., Bloom S.E. Visualization of nucleolar organizer in mammalian chromosomes using silver staining. Chromosoma. 1975;53:37–50. doi: 10.1007/BF00329389. PubMed DOI
Kubickova S., Cernohorska H., Musilova P., Rubes J. The use of laser microdissection for the preparation of chromosomespecific painting probes in farm animals. Chromosome Res. 2002;10:571–577. doi: 10.1023/A:1020914702767. PubMed DOI
Pauciullo A., Kubickova S., Cernohorska H., Petrova K., Di Berardino D., Ramunno L., Rubes J. Isolation and physical localization of new chromosome specific repeats in farm animals. Vet. Med. Czech. 2006;51:224–231. doi: 10.17221/5541-VETMED. DOI
Cernohorska H., Kubickova S., Kopecna O., Vozdova M., Matthee C.A., Robinson T.J., Rubes J. Nanger, Eudorcas, Gazella, and Antilope form a well-supported chromosomal clade within Antilopini (Bovidae, Cetartiodactyla) Chromosoma. 2015;124:235–247. doi: 10.1007/s00412-014-0494-5. PubMed DOI
Hungerford D.A., Sharat Chandra H., Snyder R.L., Ulmer F.A., Jr. Chromosomes of three elephants, two Asian (Elephas maximus) and one African (Loxodonta africana) Cytogenetics. 1966;5:243–246. doi: 10.1159/000129900. PubMed DOI
Norberg H.S. The chromosomes of the Indian female elephant (Elephas indicus syn. E. maximus L.) Hereditas. 1969;63:279–281. doi: 10.1111/j.1601-5223.1969.tb02265.x. PubMed DOI
Kopecna O., Kubickova S., Cernohorska H., Cabelova K., Vahala J., Martinkova N., Rubes J. Tribe-specific satellite DNA in non-domestic Bovidae. Chromosome Res. 2014;22:277–291. doi: 10.1007/s10577-014-9401-4. PubMed DOI
Barra V., Fachinetti D. The dark side of centromeres: Types, causes and consequences of structural abnormalities implicating centromeric DNA. Nat. Commun. 2018;9:4340. doi: 10.1038/s41467-018-06545-y. PubMed DOI PMC
Hartl G.B., Kurt F., Hemmer W., Nadlinger K. Electrophoretic and chromosomal variation in captive Asian elephants (Elephas maximus) Zoo. Biol. 1995;14:87–95. doi: 10.1002/zoo.1430140202. DOI
Rattanayuvakorn S., Tanomtong A., Phimphan S., Sangpakdee W., Pinmongkhonkul S., Phintong K. Karyological Study of Tusker and Tuskless Male Asian Elephant (Elephas maximus) by Conventional, GTG-, and Ag-NOR Banding Techniques. CYTOLOGIA. 2017;82:349–354. doi: 10.1508/cytologia.82.349. DOI
Liehr T., Mrasek K., Kosyakova N., Ogilvie C.M., Vermeesch J., Trifonov V., Rubtsov N. Small supernumerary marker chromosomes (sSMC) in humans; are there B chromosomes hidden among them. Mol. Cytogenet. 2008;1:12. doi: 10.1186/1755-8166-1-12. PubMed DOI PMC
Fuster C., Rigola M.A., Egozcue J. Human supernumeraries: Are they B chromosomes? Cytogenet. Genome Res. 2004;106:165–172. doi: 10.1159/000079283. PubMed DOI
Camacho J.P.M. B chromosomes in the eukaryote genome. Cytogenet. Genome Res. 2004;106:147–410. doi: 10.1159/000080118. DOI
Jones R.N., Viegas W., Houben A. A century of B chromosomes in plants: So what? Ann. Bot. 2008;101:767–775. doi: 10.1093/aob/mcm167. PubMed DOI PMC
Vujošević M., Rajičić M., Jelena Blagojević J. B chromosomes in populations of mammals revisited. Genes. 2018;9:487. doi: 10.3390/genes9100487. PubMed DOI PMC
Mackie Ogilvie C., Harrison R.H., Horsley S.W., Hodgson S.V., Kearney L. A mitotically stable marker chromosome negative for whole chromosome libraries, centromere probes and chromosome specific telomere regions: A novel class of supernumerary marker chromosome? Cytogenet Cell Genet. 2001;92:69–73. doi: 10.1159/000056871. PubMed DOI
Seifertova E., Zimmerman L.B., Gilchrist M.J., Macha J., Kubickova S., Cernohorska H., Zarsky V., Owens N.D.L., Sesay A.K., Tlapakova T., et al. Efficient high-throughput sequencing of a laser microdissected chromosome arm. BMC Genom. 2013;14:357. doi: 10.1186/1471-2164-14-357. PubMed DOI PMC