Release 4.0 of the Plant rDNA Database: A Database on Plant Ribosomal DNA Loci Number, Their Position, and Organization: An Information Source for Comparative Cytogenetics
Jazyk angličtina Země Spojené státy americké Médium print
Typ dokumentu časopisecké články
- Klíčová slova
- Chromosome, Comparative cytogenetics, Data mining, In situ hybridization, Karyotype, L-type arrangement, Ribosomal DNA, S-type arrangement,
- MeSH
- cytogenetické vyšetření MeSH
- DNA rostlinná genetika MeSH
- fylogeneze MeSH
- informační zdroje * MeSH
- Magnoliopsida * MeSH
- ribozomální DNA genetika MeSH
- ribozomy MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- DNA rostlinná MeSH
- ribozomální DNA MeSH
This paper presents the latest update to the Plant rDNA database (Release 4.0), a valuable resource for researchers in the field of plant cytogenetics. The database provides information on the number, position, and arrangement of ribosomal DNA loci in plants, including angiosperms, gymnosperms, bryophytes, and pteridophytes. The new release includes new data for 820 species coming from additional 173 papers. In the updated version of the Plant rDNA database, 4948 entries comprising 2760 organisms can be found. A brief guide on how to navigate the database and obtain the desired information is also provided. The regular updating of the database is important for ensuring the information it contains is accurate, up-to-date, and useful for the research community. The Plant rDNA database continues to be beneficial for phylogenetic and cytogenetic studies in a wide range of taxa including angiosperms, gymnosperms, and early diverging groups, such as bryophytes and lycophytes.
Bioscripts Centro de Investigación y Desarrollo de Recursos Científicos Sevilla Spain
Institut Botànic de Barcelona IBB Barcelona Catalonia Spain
Institute of Biophysics Academy of Sciences of the Czech Republic Brno Czech Republic
Parc de Recerca Biomèdica de Barcelona Barcelona Catalonia Spain
Zobrazit více v PubMed
Garcia S, Lim KY, Chester M et al (2009) Linkage of 35S and 5S rRNA genes in Artemisia (family Asteraceae): first evidence from angiosperms. Chromosoma 118:85–97. https://doi.org/10.1007/s00412-008-0179-z PubMed DOI
Garcia S, Panero JL, Siroky J, Kovařík A (2010) Repeated reunions and splits feature the highly dynamic evolution of 5S and 35S ribosomal RNA genes (rDNA) in the Asteraceae family. BMC Plant Biol 10:1–18. https://doi.org/10.1186/1471-2229-10-176 DOI
Garcia S, Kovařík A (2013) Dancing together and separate again: gymnosperms exhibit frequent changes of fundamental 5S and 35S rRNA gene (rDNA) organisation. Heredity 111:23–33. https://doi.org/10.1038/hdy.2013.11 PubMed DOI PMC
Garcia S, Garnatje T, Kovařík A (2012) Plant rDNA database: ribosomal DNA loci information goes online. Chromosoma 121:389–394. https://doi.org/10.1007/s00412-012-0368-7 PubMed DOI
Garcia S, Gálvez F, Gras A, Kovařík A, Garnatje T (2014) Plant rDNA database: update and new features. Database 2014:bau06. https://doi.org/10.1093/database/bau063 DOI
Vitales D, D’Ambrosio U, Galvez F, Kovařík A, Garcia S (2017) Third release of the plant rDNA database with updated content and information on telomere composition and sequenced plant genomes. Plant Syst Evol 303:1115–1121. https://doi.org/10.1007/s00606-017-1440-9 DOI
Garcia S, Kovařík A, Leitch AR, Garnatje T (2017) Cytogenetic features of rRNA genes across land plants: analysis of the plant rDNA database. Plant J 89:1020–1030. https://doi.org/10.1111/tpj.13442 PubMed DOI
Peska V, Mátl M, Mandáková T, Vitales D, Fajkus P, Fajkus J, Garcia S (2020) Human-like telomeres in Zostera marina reveal a mode of transition from the plant to the human telomeric sequences. J Exp Bot 71:5786–5793. https://doi.org/10.1093/jxb/eraa293 PubMed DOI
Peska V, Garcia S (2020) Origin, diversity, and evolution of telomere sequences in plants. Front Plant Sci 11:117. https://doi.org/10.3389/fpls.2020.00117 PubMed DOI PMC
Sochorová J, Garcia S, Gálvez F, Symonová R, Kovařík A (2018) Evolutionary trends in animal ribosomal DNA loci: introduction to a new online database. Chromosoma 127:141–150. https://doi.org/10.1007/s00412-017-0651-8 PubMed DOI
Sochorová J, Gálvez F, Matyášek R, Garcia S, Kovařík A (2021) Analyses of the updated “Animal rDNA Loci Database” with an emphasis on its new features. Int J Mol Sci 22:11403. https://doi.org/10.3390/ijms222111403 PubMed DOI PMC