• This record comes from PubMed

Absolute structure determination of Berkecoumarin by X-ray and electron diffraction

. 2024 May 01 ; 80 (Pt 5) : 143-147. [epub] 20240410

Status PubMed-not-MEDLINE Language English Country Great Britain, England Media print-electronic

Document type Journal Article

Grant support
P20 GM103546 NIGMS NIH HHS - United States
P30 GM140963 NIGMS NIH HHS - United States
U24 GM129539 NIGMS NIH HHS - United States
U24 GM129539 NIH HHS - United States

X-ray and electron diffraction methods independently identify the S-enantiomer of Berkecoumarin [systematic name: (S)-8-hydroxy-3-(2-hydroxypropyl)-6-methoxy-2H-chromen-2-one]. Isolated from Berkeley Pit Lake Penicillium sp., Berkecoumarin is a natural product with a light-atom composition (C13H14O5) that challenges in-house absolute structure determination by anomalous scattering. This study further demonstrates the utility of dynamical refinement of electron-diffraction data for absolute structure determination.

See more in PubMed

Ayer, W. A. & Racok, J. S. (1990). Can. J. Chem. 68, 2085–2094.

Brázda, P., Palatinus, L. & Babor, M. (2019). Science, 364, 667–669. PubMed

Bruker (2015). SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.

Bruker (2021). APEX4. Bruker AXS Inc., Madison, Wisconsin, USA.

Cheng, A., Negro, C., Bruhn, J. F., Rice, W. J., Dallakyan, S., Eng, E. T., Waterman, D. G., Potter, C. S. & Carragher, B. (2021). Protein Sci. 30, 136–150. PubMed PMC

Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.

Fargher, H. A., Sherbow, T. J., Haley, M. M., Johnson, D. W. & Pluth, M. D. (2022). Chem. Soc. Rev. 51, 1454–1469. PubMed PMC

Finefield, J. M., Sherman, D. H., Kreitman, M. & Williams, R. M. (2012). Angew. Chem. Int. Ed. 51, 4802–4836. PubMed PMC

Flack, H. D. (2008). Acta Chim. Slov. 55, 689–691.

Flack, H. D. & Bernardinelli, G. (2000). J. Appl. Cryst. 33, 1143–1148.

Flack, H. D. & Bernardinelli, G. (2008). Chirality, 20, 681–690. PubMed

Flack, H. D. & Shmueli, U. (2007). Acta Cryst. A63, 257–265. PubMed

Gammons, C. H. & Duaime, T. E. (2006). Mine Water Environ. 25, 76–85.

Hooft, R. W. W., Straver, L. H. & Spek, A. L. (2008). J. Appl. Cryst. 41, 96–103. PubMed PMC

Klar, P. B., Krysiak, Y., Xu, H., Steciuk, G., Cho, J., Zou, X. & Palatinus, L. (2023). Nat. Chem. 15, 848–855. PubMed PMC

Krause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst. 48, 3–10. PubMed PMC

Mitman, G. (1999). Mine Waste Technology Program Activity IV, Project 10. US EPA National Risk Management Lab. IAG # DW89938513-01-0-4.

Palatinus, L., Brázda, P., Jelínek, M., Hrdá, J., Steciuk, G. & Klementová, M. (2019). Acta Cryst. B75, 512–522. PubMed

Palatinus, L., Corrêa, C. A., Steciuk, G., Jacob, D., Roussel, P., Boullay, P., Klementová, M., Gemmi, M., Kopeček, J., Domeneghetti, M. C., Cámara, F. & Petříček, V. (2015). Acta Cryst. B71, 740–751. PubMed

Palatinus, L., Petříček, V. & Corrêa, C. A. (2015). Acta Cryst. A71, 235–244. PubMed

Parsons, S., Flack, H. D. & Wagner, T. (2013). Acta Cryst. B69, 249–259. PubMed PMC

Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.

Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.

Stierle, A. A., Stierle, D. B. & Kemp, K. (2004). J. Nat. Prod. 67, 1392–1395. PubMed

Stierle, A., Stierle, D., Newman, D. J., Cragg, G. M. & Grothaus, P. G. (2017). Chemical Biology of Natural Products, pp. 333–385. Boca Raton: CRC Press.

Find record

Citation metrics

Loading data ...

Archiving options

Loading data ...