Horizontal gene transfer (HGT) is a key driver in the evolution of bacterial genomes. The acquisition of genes mediated by HGT may enable bacteria to adapt to ever-changing environmental conditions. Long-term application of antibiotics in intensive agriculture is associated with the dissemination of antibiotic resistance genes among bacteria with the consequences causing public health concern. Commensal farm-animal-associated gut microbiota are considered the reservoir of the resistance genes. Therefore, in this study, we identified known and not-yet characterized mobilized genes originating from chicken and porcine fecal samples using our innovative pipeline followed by network analysis to provide appropriate visualization to support proper interpretation.
- MeSH
- antibakteriální látky MeSH
- Bacteria genetika MeSH
- bakteriální geny MeSH
- genom bakteriální MeSH
- mikrobiota * MeSH
- prasata MeSH
- přenos genů horizontální * MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
BACKGROUND: Faecal microbiota transplantation (FMT) is the standard treatment for patients with multiple recurrent Clostridioides difficile infection (rCDI). Recently, new commercially developed human microbiota-derived medicinal products have been evaluated and Food and Drug Administration-approved with considerable differences in terms of composition, administration, and targeted populations. OBJECTIVES: To review available data on the different microbiota-derived treatments at the stage of advanced clinical evaluation and research in rCDI in comparison with FMT. SOURCES: Phase II or III trials evaluating a microbiota-derived medicinal product to prevent rCDI. CONTENT: Two commercial microbiota-derived medicinal products are approved by the Food and Drug Administration: Rebyota (RBX2660 Ferring Pharmaceuticals, marketed in the United States) and VOWST (SER-109 -Seres Therapeutics, marketed in the United States), whereas VE303 (Vedanta Biosciences Inc) will be studied in phase III trial. RBX2660 and SER-109 are based on the processing of stools from healthy donors, whereas VE303 consists of a defined bacterial consortium originating from human stools and produced from clonal cell banks. All have proven efficacy to prevent rCDI compared with placebo in patients considered at high risk of recurrence. However, the heterogeneity of the inclusion criteria, and the time between each episode and CDI diagnostics makes direct comparison between trials difficult. The differences regarding the risk of recurrence between the treatment and placebo arms were lower than previously described for FMT (FMT: Δ = 50.5%; RBX2660-phase III: Δ = 13.1%; SER-109-phase III: Δ = 28%; high-dose VE303-phase-II: Δ = 31.7%). All treatments presented a good overall safety profile with mainly mild gastrointestinal symptoms. IMPLICATIONS: Stool-derived products and bacterial consortia need to be clearly distinguished in terms of product characterization and their associated risks with specific long-term post-marketing evaluation similar to registries used for FMT. Their place in the therapeutic strategy for patients with rCDI requires further studies to determine the most appropriate patient population and administration route to prevent rCDI.
- MeSH
- Clostridioides difficile * MeSH
- fekální transplantace MeSH
- klostridiové infekce * mikrobiologie MeSH
- lidé MeSH
- mikrobiota * MeSH
- recidiva MeSH
- výsledek terapie MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- přehledy MeSH
Diabetes mellitus is a chronic disease affecting glucose metabolism. The pathophysiological reactions underpinning the disease can lead to the development of late diabetes complications. The gut microbiota plays important roles in weight regulation and the maintenance of a healthy digestive system. Obesity, diabetes mellitus, diabetic retinopathy, diabetic nephropathy and diabetic neuropathy are all associated with a microbial imbalance in the gut. Modern technical equipment and advanced diagnostic procedures, including xmolecular methods, are commonly used to detect both quantitative and qualitative changes in the gut microbiota. This review summarises collective knowledge on the role of the gut microbiota in both types of diabetes mellitus and their late complications, with a particular focus on diabetic foot syndrome.
- MeSH
- diabetes mellitus * MeSH
- diabetická noha * MeSH
- diabetická retinopatie * MeSH
- diabetické nefropatie * etiologie MeSH
- lidé MeSH
- obezita MeSH
- střevní mikroflóra * MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- přehledy MeSH
The synchronous research and analysis of total and active soil microbial communities can provide insight into how these communities are impacted by continuous cropping years and pathogen infection. The diversity of total and active bacteria in rhizospheric soil of 2-year-old and 3-year-old healthy and diseased Panax notoginseng can comprehensively reveal the bacterial response characteristics in continuous cropping practice. The results showed that 4916 operational taxonomic units (OTUs) were found in the rhizospheric soil bacterial community of P. notoginseng at the DNA level, but only 2773 OTUs were found at the RNA level. The rhizospheric environment had significant effects on the active and bacterial communities, as indicated by the number of OTUs, Shannon, Chao1, Faith's phylogenetic diversity (Faith's PD), and Simpson's diversity indexes. The DNA level can better show the difference in diversity level before and after infection with root rot. The bacterial Chao1 and Faith's PD diversity indexes of 2-year-old root rot-diseased P. notoginseng rhizospheric soil (D2) were higher than that of healthy plants, while the bacterial Shannon diversity index of 3-year-old root rot-diseased P. notoginseng rhizospheric soil (D3) was the lowest in the total bacteria. Principal coordinate analysis (PCoA) illustrated that the total bacterial species composition changed markedly after root rot disease. There were significant differences in the composition of active bacterial species between the 2-year and 3-year rhizospheres. In conclusion, the total and active edaphic rhizospheric bacterial communities could provide important opportunities to understand the responses of bacteria to continuous cropping of P. notoginseng.
- MeSH
- Bacteria * klasifikace genetika izolace a purifikace MeSH
- biodiverzita * MeSH
- DNA bakterií genetika MeSH
- fylogeneze * MeSH
- kořeny rostlin mikrobiologie MeSH
- nemoci rostlin mikrobiologie MeSH
- Panax notoginseng * mikrobiologie MeSH
- půda chemie MeSH
- půdní mikrobiologie * MeSH
- rhizosféra * MeSH
- RNA ribozomální 16S genetika MeSH
- Publikační typ
- časopisecké články MeSH
The occurrence of toxic bloom-forming cyanobacteria, Microcystis aeruginosa, has been frequently reported worldwide. These colony forming toxic cyanobacteria harbour a wide range of heterotrophic bacterial communities. The present study has attempted to understand the bloom dynamics of M. aeruginosa along with isolating their colony-associated culturable heterotrophic bacteria from two freshwater ponds in south India with a persisting cyanobacterial bloom. The monthly monitoring of these study areas revealed the conducive role of warm, stagnant waters with high nutrients in forming M. aeruginosa bloom. The peak values of temperature, nitrate, and phosphate at station 1 reached up to 30.5 °C, 4.48 mg/L, 1.64 mg/L, and at station 2, 31 °C, 3.45 mg/L, and 0.62 mg/L, respectively. Twenty-eight bacterial isolates belonging to Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Actinobacteria, and Firmicutes were obtained during the study. Among these 28 isolates, Firmicutes was dominant with the M. aeruginosa bloom from both the study areas.
- MeSH
- Bacteria klasifikace genetika izolace a purifikace růst a vývoj MeSH
- biodiverzita * MeSH
- DNA bakterií genetika MeSH
- eutrofizace MeSH
- fylogeneze * MeSH
- Microcystis * růst a vývoj klasifikace genetika MeSH
- RNA ribozomální 16S * genetika MeSH
- sladká voda mikrobiologie MeSH
- teplota MeSH
- Publikační typ
- časopisecké články MeSH
- Geografické názvy
- Indie MeSH
The mangrove ecosystem is the world's fourth most productive ecosystem in terms of service value and offering rich biological resources. Microorganisms play vital roles in these ecological processes, thus researching the mangroves-microbiota is crucial for a deeper comprehension of mangroves dynamics. Amplicon sequencing that targeted V4 region of 16S rRNA gene was employed to profile the microbial diversities and community compositions of 19 soil samples, which were collected from the rhizosphere of 3 plant species (i.e., Avicennia marina, Ceriops tagal, and Rhizophora mucronata) in the mangrove forests of Lasbela coast, Pakistan. A total of 67 bacterial phyla were observed from three mangroves species, and these taxa were classified into 188 classes, 453 orders, 759 families, and 1327 genera. We found that Proteobacteria (34.9-38.4%) and Desulfobacteria (7.6-10.0%) were the dominant phyla followed by Chloroflexi (6.6-7.3%), Gemmatimonadota (5.4-6.8%), Bacteroidota (4.3-5.5%), Planctomycetota (4.4-4.9%) and Acidobacteriota (2.7-3.4%), Actinobacteriota (2.5-3.3%), and Crenarchaeota (2.5-3.3%). After considering the distribution of taxonomic groups, we prescribe that the distinctions in bacterial community composition and diversity are ascribed to the changes in physicochemical attributes of the soil samples (i.e., electrical conductivity (ECe), pH, total organic matter (OM), total organic carbon (OC), available phosphorus (P), and extractable potassium (CaCO3). The findings of this study indicated a high-level species diversity in Pakistani mangroves. The outcomes may also aid in the development of effective conservation policies for mangrove ecosystems, which have been hotspots for anthropogenic impacts in Pakistan. To our knowledge, this is the first microbial research from a Pakistani mangrove forest.
- MeSH
- Avicennia mikrobiologie MeSH
- Bacteria * klasifikace genetika izolace a purifikace MeSH
- biodiverzita * MeSH
- DNA bakterií genetika MeSH
- fylogeneze * MeSH
- mikrobiota * MeSH
- mokřady * MeSH
- půdní mikrobiologie * MeSH
- Rhizophoraceae mikrobiologie MeSH
- rhizosféra MeSH
- RNA ribozomální 16S * genetika MeSH
- Publikační typ
- časopisecké články MeSH
- Geografické názvy
- Pákistán MeSH
O léčbě nehojících se ran se diskutuje celá staletí jak mezi zdravotníky, tak i samotnými laiky. Aktuálně se více orientujeme i na celkové psychosomatické nastavení organizmu. Pozornost v léčbě ran směřuje především k vlhkému hojení a současně k možnostem celkového přenastavení imunitního systému, zejména v souvislosti s dosud známými poznatky o vzájemných vlivech mikrobiomu a emocí.
The treatment of non-healing wounds has been debated for centuries, both among medical professionals and laymen themselves. We are currently focusing more on the overall psychosomatic setting of the organism. Attention in the treatment of wounds is directed mainly to moist healing and at the same time to the possibilities of a general readjustment of the immune system, especially in connection with the hitherto known knowledge about the mutual effects of the microbiome and emotions.
- MeSH
- dysbióza etiologie komplikace terapie MeSH
- fekální transplantace MeSH
- lidé MeSH
- prebiotika MeSH
- probiotika terapeutické užití MeSH
- střevní mikroflóra * fyziologie účinky léků MeSH
- synbiotika MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- přehledy MeSH
Mikroflóru obývající střevo jako jeden celek označujeme jako střevní mikrobiota, jejich genomy souhrnně jako mikrobiom. Dysbióza je porušením rovnováhy mezi střevní mikrobiotou, imunitním systémem a epiteliální střevní bariérou. Dysbióza je asociována nejen s řadou gastrointestinálních chorob, včetně zánětlivých i nádorových onemocnění slinivky břišní. Neznáme odpověď, zda je dysbióza kauzálním faktorem vzniku chronické pankreatitidy, ale je fakt, že např. tíže onemocnění nebo změny exokrinní či endokrinní pankreatické funkce se střevní mikrobiotou souvisejí. Pankreatické enzymy, především pankreatická elastáza, se významně podílejí na modulaci střevní mikroflóry. Specifické změny složení střevního mikrobiomu u osob s autoimunitní formou chronické pankreatitidy by se mohly stát i časnými diagnostickými markery onemocnění. Je evidentní, že systematický výzkum je v této oblasti pankreatologie více než žádoucí.
We refer to the microflora inhabiting the intestine as a whole as the intestinal microbiota, and their genomes collectively as the microbiome. Dysbiosis is a violation of the balance between the intestinal microbiota, the immune system and the epithelial intestinal barrier. Dysbiosis is associated not only with a number of gastrointestinal diseases, including inflammatory and cancerous diseases of the pancreas. We do not know the answer as to whether dysbiosis is a causal factor in the development of chronic pancreatitis, but it is a fact that, for example, the severity of the disease or changes in exocrine or endocrine pancreatic function are related to the intestinal microbiota. Pancreatic enzymes, especially pancreatic elastase, are significantly involved in the modulation of intestinal microflora. Specific changes in the composition of the intestinal microbiome in people with an autoimmune form of chronic pancreatitis could also become early diagnostic markers of the disease. It is evident that systematic research is more than desirable in this area of pancreatology.
- MeSH
- autoimunitní pankreatitida imunologie klasifikace mikrobiologie MeSH
- chronická pankreatitida * diagnóza komplikace mikrobiologie patologie MeSH
- dysbióza MeSH
- komorbidita MeSH
- lidé MeSH
- nemoci slinivky břišní diagnóza komplikace mikrobiologie patologie MeSH
- střevní mikroflóra * účinky léků MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- přehledy MeSH
