Nejvíce citovaný článek - PubMed ID 38407427
Distinct geographic parthenogenesis in spite of niche conservatism and a single ploidy level: A case of Rubus ser. Glandulosi (Rosaceae)
Polyploidization (whole-genome duplication, WGD) is a widespread large-effect macromutation with far-reaching genomic, phenotypic, and evolutionary consequences. Yet, we do not know whether the consistent phenotypic changes that are associated with polyploidization translate into predictable changes in ecological preferences. Niche modeling studies in mixed-ploidy species provide an opportunity to compare recently originated polyploids with their lower-ploidy ancestors. However, the available isolated studies provide contrasting results and the diverse methodologies used limit generalization. Based on 25,857 georeferenced ploidy-verified occurrence data for 129 mixed-ploidy flowering plant species, we tested in a unified statistical framework whether WGD is associated with consistent changes in climatic niche and in past, current, and predicted future range size. We found that 74% of species exhibited significant niche shifts associated with ploidy transition. However, there was no consistent environmental parameter underlying ploidy differentiation across species, nor was there consistent support for polyploid range or niche expansion in a subset of 75 densely sampled species with sufficient data for modeling. Our results demonstrate that polyploidization is an important factor affecting niche evolution of a species, but the environmental parameters underlying the ploidy-related niche shifts vary from species to species, demonstrating limited predictability of the outcomes of WGD in ecological space.
- Klíčová slova
- ecological differentiation, environmental niche modelling, meta-analysis, niche evolution, polyploidy,
- MeSH
- biologická evoluce MeSH
- duplikace genu * MeSH
- ekosystém * MeSH
- genom rostlinný * MeSH
- Magnoliopsida * genetika MeSH
- ploidie MeSH
- podnebí * MeSH
- polyploidie * MeSH
- Publikační typ
- časopisecké články MeSH
BACKGROUND AND AIMS: Rubus ser. Glandulosi provides a unique model of geographical parthenogenesis on a homoploid (2n = 4x) level. We aim to characterize evolutionary and phylogeographical patterns in this taxon and shed light on the geographical differentiation of apomicts and sexuals. Ultimately, we aim to evaluate the importance of phylogeography in the formation of geographical parthenogenesis. METHODS: Rubus ser. Glandulosi was sampled across its Eurasian range together with other co-occurring Rubus taxa (587 individuals in total). Double-digest restriction site-associated DNA sequencing (ddRADseq) and modelling of suitable climate were used for evolutionary inferences. KEY RESULTS: Six ancestral species were identified that contributed to the contemporary gene pool of R. ser. Glandulosi. Sexuals were introgressed from Rubus dolichocarpus and Rubus moschus in West Asia and from Rubus ulmifolius agg., Rubus canescens and Rubus incanescens in Europe, whereas apomicts were characterized by alleles of Rubus subsect. Rubus. Gene flow between sexuals and apomicts was also detected, as was occasional hybridization with other taxa. CONCLUSIONS: We hypothesize that sexuals survived the last glacial period in several large southern refugia, whereas apomicts were mostly restricted to southern France, whence they quickly recolonized Central and Western Europe. The secondary contact of sexuals and apomicts was probably the principal factor that established geographical parthenogenesis in R. ser. Glandulosi. Sexual populations are not impoverished in genetic diversity along their borderline with apomicts, and maladaptive population genetic processes probably did not shape the geographical patterns.
- Klíčová slova
- Rubus subgen. Rubus, Apomixis, ddRADseq, geographical parthenogenesis, introgression, private alleles,
- MeSH
- apomixie genetika MeSH
- biologická evoluce MeSH
- fylogeneze MeSH
- fylogeografie * MeSH
- genetická variace MeSH
- partenogeneze genetika MeSH
- Rosaceae * genetika fyziologie MeSH
- tok genů MeSH
- Publikační typ
- časopisecké články MeSH
- Geografické názvy
- Asie MeSH
- Evropa MeSH