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Mycobiome diversity: high-throughput sequencing and identification of fungi
RH. Nilsson, S. Anslan, M. Bahram, C. Wurzbacher, P. Baldrian, L. Tedersoo,
Language English Country Great Britain
Document type Journal Article, Research Support, Non-U.S. Gov't, Review
NLK
ProQuest Central
from 2003-10-01 to 1 year ago
Nursing & Allied Health Database (ProQuest)
from 2003-10-01 to 1 year ago
Health & Medicine (ProQuest)
from 2003-10-01 to 1 year ago
Public Health Database (ProQuest)
from 2003-10-01 to 1 year ago
- MeSH
- Biodiversity * MeSH
- Fungi classification MeSH
- Mycobiome * MeSH
- Reproducibility of Results MeSH
- DNA Barcoding, Taxonomic MeSH
- High-Throughput Nucleotide Sequencing * MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Review MeSH
Fungi are major ecological players in both terrestrial and aquatic environments by cycling organic matter and channelling nutrients across trophic levels. High-throughput sequencing (HTS) studies of fungal communities are redrawing the map of the fungal kingdom by hinting at its enormous - and largely uncharted - taxonomic and functional diversity. However, HTS approaches come with a range of pitfalls and potential biases, cautioning against unwary application and interpretation of HTS technologies and results. In this Review, we provide an overview and practical recommendations for aspects of HTS studies ranging from sampling and laboratory practices to data processing and analysis. We also discuss upcoming trends and techniques in the field and summarize recent and noteworthy results from HTS studies targeting fungal communities and guilds. Our Review highlights the need for reproducibility and public data availability in the study of fungal communities. If the associated challenges and conceptual barriers are overcome, HTS offers immense possibilities in mycology and elsewhere.
Chair of Urban Water Systems Engineering Technical University of Munich Garching Germany
Department of Ecology Swedish University of Agricultural Sciences Uppsala Sweden
Natural History Museum of Tartu University Tartu Estonia
Zoological Institute Braunschweig University of Technology Braunschweig Germany
References provided by Crossref.org
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