Aqueous trifluorethanol solutions simulate the environment of DNA in the crystalline state
Jazyk angličtina Země Anglie, Velká Británie Médium print
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
10446234
PubMed Central
PMC148588
DOI
10.1093/nar/27.17.3466
PII: gkc543
Knihovny.cz E-zdroje
- MeSH
- cirkulární dichroismus * MeSH
- DNA chemie metabolismus MeSH
- konformace nukleové kyseliny MeSH
- krystalografie rentgenová metody MeSH
- molekulární sekvence - údaje MeSH
- roztoky chemie MeSH
- sekvence nukleotidů MeSH
- trifluorethanol chemie MeSH
- voda chemie metabolismus MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- DNA MeSH
- roztoky MeSH
- trifluorethanol MeSH
- voda MeSH
We took 28 fragments of DNA whose crystal structures were known and used CD spectroscopy to search for conditions stabilising the crystal structures in solution. All 28 fragments switched into their crystal structures in 60-80% aqueous trifluorethanol (TFE) to indicate that the crystals affected the conformation of DNA like the concentrated TFE. The fragments crystallising in the B-form also underwent cooperative TFE-induced changes that took place within the wide family of B-form structures, suggesting that the aqueous and crystal B-forms differed as well. Spermine and magnesium or calcium cations, which were contained in the crystallisation buffers, promoted or suppressed the TFE-induced changes of several fragments to indicate that the crystallisation agents can decide which of the possible structures is adopted by the DNA fragment in the crystal.
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