Semiempirical quantum mechanical method PM6-DH2X describes the geometry and energetics of CK2-inhibitor complexes involving halogen bonds well, while the empirical potential fails
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
21648479
DOI
10.1021/jp202149z
Knihovny.cz E-zdroje
- MeSH
- halogenace MeSH
- halogeny chemie MeSH
- inhibitory enzymů chemie metabolismus MeSH
- kaseinkinasa II antagonisté a inhibitory chemie MeSH
- konformace proteinů MeSH
- kvantová teorie * MeSH
- molekulární modely * MeSH
- molekulární struktura MeSH
- termodynamika MeSH
- vazba proteinů MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- halogeny MeSH
- inhibitory enzymů MeSH
- kaseinkinasa II MeSH
In the present study, we have investigated complexes of CK2 protein kinase with halogenated inhibitors by means of the advanced semiempirical quantum mechanical (SQM) PM6 method (called PM6-DH2X), which describes various types of noncovalent interactions including halogen bonding well. The PM6-DH2X method provides reliable geometries of those CK2 protein kinase-inhibitor complexes involving halogen bonds that agree well with the X-ray crystal structures. When the Amber empirical potential is applied, this agreement becomes considerably worse. Similarly, the binding free energies determined by the PM6-DH2X SQM method are much closer to the experimental inhibition constants than those based on the Amber empirical potential.
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