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Novel colicin Fy of Yersinia frederiksenii inhibits pathogenic Yersinia strains via YiuR-mediated reception, TonB import, and cell membrane pore formation

. 2012 Apr ; 194 (8) : 1950-9. [epub] 20120217

Language English Country United States Media print-electronic

Document type Journal Article, Research Support, Non-U.S. Gov't

A novel colicin type, designated colicin Fy, was found to be encoded and produced by the strain Yersinia frederiksenii Y27601. Colicin Fy was active against both pathogenic and nonpathogenic strains of the genus Yersinia. Plasmid YF27601 (5,574 bp) of Y. frederiksenii Y27601 was completely sequenced. The colicin Fy activity gene (cfyA) and the colicin Fy immunity gene (cfyI) were identified. The deduced amino acid sequence of colicin Fy was very similar in its C-terminal pore-forming domain to colicin Ib (69% identity in the last 178 amino acid residues), indicating pore forming as its lethal mode of action. Transposon mutagenesis of the colicin Fy-susceptible strain Yersinia kristensenii Y276 revealed the yiuR gene (ykris001_4440), which encodes the YiuR outer membrane protein with unknown function, as the colicin Fy receptor molecule. Introduction of the yiuR gene into the colicin Fy-resistant strain Y. kristensenii Y104 restored its susceptibility to colicin Fy. In contrast, the colicin Fy-resistant strain Escherichia coli TOP10F' acquired susceptibility to colicin Fy only when both the yiuR and tonB genes from Y. kristensenii Y276 were introduced. Similarities between colicins Fy and Ib, similarities between the Cir and YiuR receptors, and the detected partial cross-immunity of colicin Fy and colicin Ib producers suggest a common evolutionary origin of the colicin Fy-YiuR and colicin Ib-Cir systems.

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Abbott JD, Graham JM. 1961. Colicine typing of Shigella sonnei. Mon. Bull. Minist. Health Public Health Lab. Serv. 20: 51– 58 PubMed

Bagos PG, Liakopoulos TD, Spyropoulos IC, Hamodrakas SJ. 2004. A hidden Markov model method, capable of predicting and discriminating beta-barrel outer membrane proteins. BMC Bioinformatics 15: 5– 29 PubMed PMC

Bagos PG, Liakopoulos TD, Spyropoulos IC, Hamodrakas SJ. 2004. PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins. Nucleic Acids Res. 32(Web Server issue) W400– W404 PubMed PMC

Ben-Gurion R, Hertman I. 1958. Bacteriocin-like material produced by Pasteurella pestis. J. Gen. Microbiol. 19: 289– 297 PubMed

Bottone EJ, Sandhu KK, Pisano MA. 1979. Yersinia intermedia: temperature-dependent bacteriocin production. J. Clin. Microbiol. 10: 433– 436 PubMed PMC

Braun V, Gunter K, Hantke K. 1991. Transport of iron across the outer membrane. Biol. Met. 4: 14– 22 PubMed

Brewer S, et al. 1990. Structure and function of X-Pro dipeptide repeats in the TonB proteins of Salmonella typhimurium and Escherichia coli. J. Mol. Biol. 216: 883– 895 PubMed

Brubaker RR, Surgalla MJ. 1961. Pesticins. I. Pesticinbacterium interrelationships, and environmental factors influencing activity. J. Bacteriol. 82: 940– 949 PubMed PMC

Buchanan SK, et al. 2007. Structure of colicin I receptor bound to the R-domain of colicin Ia: implications for protein import. EMBO J. 26: 2594– 2604 PubMed PMC

Cafferkey MT, Sloane A, McCrae S, O'Morain CA. 1993. Yersinia frederiksenii infection and colonization in hospital staff. J. Hosp. Infect. 24: 109– 115 PubMed

Cascales E, et al. 2007. Colicin biology. Microbiol. Mol. Biol. Rev. 71: 158– 229 PubMed PMC

Cole ST, Saint-Joanis B, Pugsley AP. 1985. Molecular characterisation of the colicin E2 operon and identification of its products. Mol. Gen. Genet. 198: 465– 472 PubMed

Crossman LC, et al. 2010. A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407. J. Bacteriol. 192: 5822– 5831 PubMed PMC

Cursino L, et al. 2006. Exoproducts of the Escherichia coli strain H22 inhibiting some enteric pathogens both in vitro and in vivo. J. Appl. Microbiol. 100: 821– 829 PubMed

Darby AC, et al. 2010. Characteristics of the genome of Arsenophonus nasoniae, son-killer bacterium of the wasp Nasonia. Insect. Mol. Biol. 19( Suppl 1): 75– 89 PubMed

Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. 1999. Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 27: 4636– 4641 PubMed PMC

Ferber DM, Fowler JM, Brubaker RR. 1981. Mutations to tolerance and resistance to pesticin and colicins in Escherichia coli phi. J. Bacteriol. 146: 506– 511 PubMed PMC

Foulds J. 1972. Purification and partial characterization of a bacteriocin from Serratia marcescens. J. Bacteriol. 110: 1001– 1009 PubMed PMC

Fredericq P. 1965. A note on the classification of colicines. Zentralbl. Bakteriol. Parasitenk. 1 Abt. Orig. 196: 140– 142

Gaisser S, Braun V. 1991. The tonB gene of Serratia marcescens: sequence, activity and partial complementation of Escherichia coli tonB mutants. Mol. Microbiol. 5: 2777– 2787 PubMed

Gillor O, Giladi I, Riley MA. 2009. Persistence of colicinogenic Escherichia coli in the mouse gastrointestinal tract. BMC Microbiol. 9: 165. PubMed PMC

Gillor O, Vriezen JA, Riley MA. 2008. The role of SOS boxes in enteric bacteriocin regulation. Microbiology 154: 1783– 1792 PubMed PMC

Gorbacheva VY, Faundez G, Godfrey HP, Cabello FC. 2001. Restricted growth of ent(-) and tonB mutants of Salmonella enterica serovar Typhi in human Mono Mac 6 monocytic cells. FEMS Microbiol. Lett. 196: 7– 11 PubMed

Gordon DM, Riley MA. 1999. A theoretical and empirical investigation of the invasion dynamics of colicinogeny. Microbiology 145( Pt 3): 655– 661 PubMed

Grant SG, Jessee J, Bloom FR, Hanahan D. 1990. Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants. Proc. Natl. Acad. Sci. U. S. A. 87: 4645– 4649 PubMed PMC

Hashimoto-Gotoh T, Inselburg J. 1979. ColE1 plasmid incompatibility: localization and analysis of mutations affecting incompatibility. J. Bacteriol. 139: 608– 619 PubMed PMC

Horák V. 1994. Seventy colicin types of Shigella sonnei and an indicator system for their determination. Zentralbl. Bakteriol. 281: 24– 29 PubMed

Horák V, Sobotková J. 1988. Sensitivity to colicin Js, one of important characteristics of Escherichia coli strains belonging to enteroinvasive serovars. Zentralbl. Bakteriol. Mikrobiol. Hyg. A. 269: 156– 159 PubMed

Hu PC, Brubaker RR. 1974. Characterization of pesticin. Separation of antibacterial activities. J. Biol. Chem. 249: 4749– 4753 PubMed

Hurst MR, Becher SA, Young SD, Nelson TL, Glare TR. 2011. Yersinia entomophaga sp. nov., isolated from the New Zealand grass grub Costelytra zealandica. Int. J. Syst. Evol. Microbiol. 61: 844– 849 PubMed

Chan PT, Ohmori H, Tomizawa J, Lebowitz J. 1985. Nucleotide sequence and gene organization of ColE1 DNA. J. Biol. Chem. 260: 8925– 8935 PubMed

Chhibber S, Vadehra DV. 1986. Purification and characterization of a bacteriocin from Klebsiella pneumoniae 158. J. Gen. Microbiol. 132: 1051– 1054 PubMed

Jakes KS, Finkelstein A. 2010. The colicin Ia receptor, Cir, is also the translocator for colicin Ia. Mol. Microbiol. 75: 567– 578 PubMed PMC

Kerr B, Riley MA, Feldman MW, Bohannan BJ. 2002. Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors. Nature 418: 171– 174 PubMed

Kirillina O, Bobrov AG, Fetherston JD, Perry RD. 2006. Hierarchy of iron uptake systems: Yfu and Yiu are functional in Yersinia pestis. Infect. Immun. 74: 6171– 6178 PubMed PMC

Koebnik R, Baumler AJ, Heesemann J, Braun V, Hantke K. 1993. The TonB protein of Yersinia enterocolitica and its interactions with TonB-box proteins. Mol. Gen. Genet. 237: 152– 160 PubMed

Konisky J, Cowell BS. 1972. Interaction of colicin Ia with bacterial cells. Direct measurement of Ia-receptor interaction. J. Biol. Chem. 247: 6524– 6529 PubMed

Konisky J, Richards FM. 1970. Characterization of colicin Ia and colicin Ib. Purification and some physical properties. J. Biol. Chem. 245: 2972– 2978 PubMed

Kotetishvili M, et al. 2005. Multilocus sequence typing for studying genetic relationships among Yersinia species. J. Clin. Microbiol. 43: 2674– 2684 PubMed PMC

Larkin MA, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947– 2948 PubMed

Lukashin AV, Borodovsky M. 1998. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26: 1107– 1115 PubMed PMC

Merhej V, Adekambi T, Pagnier I, Raoult D, Drancourt M. 2008. Yersinia massiliensis sp. nov., isolated from fresh water. Int. J. Syst. Evol. Microbiol. 58: 779– 784 PubMed

Michel-Briand Y, Baysse C. 2002. The pyocins of Pseudomonas aeruginosa. Biochimie 84: 499– 510 PubMed

Mingrone MG, Fantasia M, Figura N, Guglielmetti P. 1987. Characteristics of Yersinia enterocolitica isolated from children with diarrhea in Italy. J. Clin. Microbiol. 25: 1301– 1304 PubMed PMC

Morlon J, Lloubes R, Varenne S, Chartier M, Lazdunski C. 1983. Complete nucleotide sequence of the structural gene for colicin A, a gene translated at non-uniform rate. J. Mol. Biol. 170: 271– 285 PubMed

Murros-Kontiainen AE, et al. 2011. Yersinia nurmii sp. nov. Int. J. Syst. Evol. Microbiol. 61( Pt 10): 2368– 2372 PubMed

Murros-Kontiainen AE, et al. 2011. Yersinia pekkanenii sp. nov. Int. J. Syst. Evol. Microbiol. 61( Pt 10): 2363– 2367 PubMed

Page RD. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12: 357– 358 PubMed

Pan L, Leung PC, Gu JD. 2010. A new ColE1-like plasmid group revealed by comparative analysis of the replication proficient fragments of Vibrionaceae plasmids. J. Microbiol. Biotechnol. 20: 1163– 1178 PubMed

Patzer SI, Baquero MR, Bravo D, Moreno F, Hantke K. 2003. The colicin G, H and X determinants encode microcins M and H47, which might utilize the catecholate siderophore receptors FepA, Cir, Fiu and IroN. Microbiology 149: 2557– 2570 PubMed

Pilsl H, Killmann H, Hantke K, Braun V. 1996. Periplasmic location of the pesticin immunity protein suggests inactivation of pesticin in the periplasm. J. Bacteriol. 178: 2431– 2435 PubMed PMC

Pilsl H, Šmajs D, Braun V. 1999. Characterization of colicin S4 and its receptor, OmpW, a minor protein of the Escherichia coli outer membrane. J. Bacteriol. 181: 3578– 3581 PubMed PMC

Posada D, Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817– 818 PubMed

Rakin A, Boolgakowa E, Heesemann J. 1996. Structural and functional organization of the Yersinia pestis bacteriocin pesticin gene cluster. Microbiology 142( Pt 12): 3415– 3424 PubMed

Rakin A, Saken E, Harmsen D, Heesemann J. 1994. The pesticin receptor of Yersinia enterocolitica: a novel virulence factor with dual function. Mol. Microbiol. 13: 253– 263 PubMed

Riley M, et al. 2006. Escherichia coli K-12: a cooperatively developed annotation snapshot—2005. Nucleic Acids Res. 34: 1– 9 PubMed PMC

Riley MA, et al. 2000. The newly characterized colicin Y provides evidence of positive selection in pore-former colicin diversification. Microbiology 146( Pt 7): 1671– 1677 PubMed

Rossignol M, Basset A, Espeli O, Boccard F. 2001. NKBOR, a mini-Tn10-based transposon for random insertion in the chromosome of Gram-negative bacteria and the rapid recovery of sequences flanking the insertion sites in Escherichia coli. Res. Microbiol. 152: 481– 485 PubMed

Sambrook J, Russell DW. 2001. Molecular cloning: a laboratory manual, 3rd ed Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY

Sandhu KK, Bottone EJ, Pisano MA. 1983. Partial characterization of Yersinia intermedia bacteriocin. J. Clin. Microbiol. 17: 511– 515 PubMed PMC

Šmajs D, Karpathy SE, Šmarda J, Weinstock GM. 2002. Colicins produced by the Escherichia fergusonii strains closely resemble colicins encoded by Escherichia coli. FEMS Microbiol. Lett. 208: 259– 262 PubMed

Šmajs D, et al. 2010. Bacteriocin synthesis in uropathogenic and commensal Escherichia coli: colicin E1 is a potential virulence factor. BMC Microbiol. 10: 288. PubMed PMC

Šmajs D, et al. 2008. Complete sequence of low-copy-number plasmid MccC7-H22 of probiotic Escherichia coli H22 and the prevalence of mcc genes among human E. coli. Plasmid 59: 1– 10 PubMed

Šmajs D, Weinstock GM. 2001. Genetic organization of plasmid ColJs, encoding colicin Js activity, immunity, and release genes. J. Bacteriol. 183: 3949– 3957 PubMed PMC

Šmajs D, Weinstock GM. 2001. The iron- and temperature-regulated cjrBC genes of Shigella and enteroinvasive Escherichia coli strains code for colicin Js uptake. J. Bacteriol. 183: 3958– 3966 PubMed PMC

Šmarda J, Damborský J. 1991. A quantitative assay of group E colicins. Scr. Med. 64: 111– 118

Šmarda J, Obdržálek V. 2001. Incidence of colicinogenic strains among human Escherichia coli. J. Basic Microbiol. 41: 367– 374 PubMed

Šmarda J, Šmajs D. 1998. Colicins—exocellular lethal proteins of Escherichia coli. Folia Microbiol. (Praha) 43: 563– 582 PubMed

Šmarda J, Šmajs D, Horynová S. 2006. Incidence of lysogenic, colicinogenic and siderophore-producing strains among human non-pathogenic Escherichia coli. Folia Microbiol. (Praha) 51: 387– 391 PubMed

Sprague LD, Neubauer H. 2005. Yersinia aleksiciae sp. nov. Int. J. Syst. Evol. Microbiol. 55: 831– 835 PubMed

Sprague LD, Scholz HC, Amann S, Busse HJ, Neubauer H. 2008. Yersinia similis sp. nov. Int. J. Syst. Evol. Microbiol. 58: 952– 958 PubMed

Stouthamer AH, Tieze GA. 1966. Bacteriocin production by members of the genus Klebsiella. Antonie Van Leeuwenhoek 32: 171– 182 PubMed

Sulakvelidze A. 2000. Yersiniae other than Y. enterocolitica, Y. pseudotuberculosis, and Y. pestis: the ignored species. Microbes Infect. 2: 497– 513 PubMed

Thomas D. 2000. The horizontal gene pool: bacterial plasmids and gene spread. Harwood Academic Publishers, Amsterdam, Netherlands

Thomson NR, et al. 2006. The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. PLoS Genet. 2: e206. PubMed PMC

Tomizawa J, Itoh T. 1981. Plasmid ColE1 incompatibility determined by interaction of RNA I with primer transcript. Proc. Natl. Acad. Sci. U. S. A. 78: 6096– 6100 PubMed PMC

Toora S. 1995. Partial purification and characterization of bacteriocin from Yersinia kristensenii. J. Appl. Bacteriol. 78: 224– 228 PubMed

Vakharia-Rao H, Kastead KA, Savenkova MI, Bulathsinghala CM, Postle K. 2007. Deletion and substitution analysis of the Escherichia coli TonB Q160 region. J. Bacteriol. 189: 4662– 4670 PubMed PMC

Viejo MB, Gargallo D, Ferrer S, Enfedaque J, Regue M. 1992. Cloning and DNA sequence analysis of a bacteriocin gene of Serratia marcescens. J. Gen. Microbiol. 138( Pt 8): 1737– 1743 PubMed

Vollmer W, Pilsl H, Hantke K, Holtje JV, Braun V. 1997. Pesticin displays muramidase activity. J. Bacteriol. 179: 1580– 1583 PubMed PMC

Wertz JE, Riley MA. 2004. Chimeric nature of two plasmids of Hafnia alvei encoding the bacteriocins alveicins A and B. J. Bacteriol. 186: 1598– 1605 PubMed PMC

Wilgenbusch JC, Swofford D. 2003. Inferring evolutionary trees with PAUP*. Curr. Protoc. Bioinformatics Chapter 6:Unit 6.4 PubMed

Wilkes TE, et al. 2010. The draft genome sequence of Arsenophonus nasoniae, son-killer bacterium of Nasonia vitripennis, reveals genes associated with virulence and symbiosis. Insect. Mol. Biol. 19( Suppl 1): 59– 73 PubMed

Zheng H, Sun Y, Lin S, Mao Z, Jiang B. 2008. Yersinia enterocolitica infection in diarrheal patients. Eur. J. Clin. Microbiol. Infect. Dis. 27: 741– 752 PubMed

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JF937653, JF937654, JF937655

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