Heat shock-induced accumulation of translation elongation and termination factors precedes assembly of stress granules in S. cerevisiae
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
23451152
PubMed Central
PMC3581570
DOI
10.1371/journal.pone.0057083
PII: PONE-D-12-31410
Knihovny.cz E-zdroje
- MeSH
- cytoplazmatická granula metabolismus MeSH
- elongační faktory chemie metabolismus MeSH
- fyziologický stres MeSH
- molekulární sekvence - údaje MeSH
- peptidy - faktory ukončení chemie metabolismus MeSH
- reakce na tepelný šok * MeSH
- ribonukleoproteiny metabolismus MeSH
- Saccharomyces cerevisiae - proteiny chemie metabolismus MeSH
- Saccharomyces cerevisiae metabolismus MeSH
- sekvence aminokyselin MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- elongační faktory MeSH
- peptidy - faktory ukončení MeSH
- ribonukleoproteiny MeSH
- Saccharomyces cerevisiae - proteiny MeSH
In response to severe environmental stresses eukaryotic cells shut down translation and accumulate components of the translational machinery in stress granules (SGs). Since they contain mainly mRNA, translation initiation factors and 40S ribosomal subunits, they have been referred to as dominant accumulations of stalled translation preinitiation complexes. Here we present evidence that the robust heat shock-induced SGs of S. cerevisiae also contain translation elongation factors eEF3 (Yef3p) and eEF1Bγ2 (Tef4p) as well as translation termination factors eRF1 (Sup45p) and eRF3 (Sup35p). Despite the presence of the yeast prion protein Sup35 in heat shock-induced SGs, we found out that its prion-like domain is not involved in the SGs assembly. Factors eEF3, eEF1Bγ2 and eRF1 were accumulated and co-localized with Dcp2 foci even upon a milder heat shock at 42°C independently of P-bodies scaffolding proteins. We also show that eEF3 accumulations at 42°C determine sites of the genuine SGs assembly at 46°C. We suggest that identification of translation elongation and termination factors in SGs might help to understand the mechanism of the eIF2α factor phosphorylation-independent repression of translation and SGs assembly.
Zobrazit více v PubMed
Buchan JR, Muhlrad D, Parker R (2008) P bodies promote stress granule assembly in Saccharomyces cerevisiae. J Cell Biol 183: 441–455. PubMed PMC
Grousl T, Ivanov P, Frydlova I, Vasicova P, Janda F, et al. (2009) Robust heat shock induces eIF2alpha-phosphorylation-independent assembly of stress granules containing eIF3 and 40S ribosomal subunits in budding yeast, Saccharomyces cerevisiae. J Cell Sci 122: 2078–2088. PubMed
Kato K, Yamamoto Y, Izawa S (2011) Severe ethanol stress induces assembly of stress granules in Saccharomyces cerevisiae. Yeast 28: 339–347. PubMed
Nilsson D, Sunnerhagen P (2011) Cellular stress induces cytoplasmic RNA granules in fission yeast. RNA 17: 120–133. PubMed PMC
Sheth U, Parker R (2003) Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300: 805–808. PubMed PMC
Hofmann S, Cherkasova V, Bankhead P, Bukau B, Stoecklin G (2012) Translation suppression promotes stress granule formation and cell survival in response to cold shock. Mol Biol Cell 23: 3786–3800. PubMed PMC
Eulalio A, Behm-Ansmant I, Izaurralde E (2007) P bodies: at the crossroads of post-transcriptional pathways. Nat Rev Mol Cell Biol 8: 9–22. PubMed
Decker CJ, Teixeira D, Parker R (2007) Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae. J Cell Biol 179: 437–449. PubMed PMC
Brengues M, Teixeira D, Parker R (2005) Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies. Science 310: 486–489. PubMed PMC
Balagopal V, Parker R (2009) Polysomes, P bodies and stress granules: states and fates of eukaryotic mRNAs. Curr Opin Cell Biol 21: 403–408. PubMed PMC
Arribere JA, Doudna JA, Gilbert WV (2011) Reconsidering movement of eukaryotic mRNAs between polysomes and P bodies. Mol Cell 44: 745–758. PubMed PMC
Parker R (2012) RNA Degradation in Saccharomyces cerevisae. Genetics 191: 671–702. PubMed PMC
Balagopal V, Fluch L, Nissan T (2012) Ways and means of eukaryotic mRNA decay. Biochim Biophys Acta. PubMed
Anderson P, Kedersha N (2008) Stress granules: the Tao of RNA triage. Trends Biochem Sci 33: 141–150. PubMed
Anderson P, Kedersha N (2002) Stressful initiations. J Cell Sci 115: 3227–3234. PubMed
Takahara T, Maeda T (2012) Transient Sequestration of TORC1 into Stress Granules during Heat Stress. Mol Cell 47: 242–252. PubMed
Buchan JR, Yoon JH, Parker R (2011) Stress-specific composition, assembly and kinetics of stress granules in Saccharomyces cerevisiae. J Cell Sci 124: 228–239. PubMed PMC
Huh WK, Falvo JV, Gerke LC, Carroll AS, Howson RW, et al. (2003) Global analysis of protein localization in budding yeast. Nature 425: 686–691. PubMed
Dunand-Sauthier I, Walker C, Wilkinson C, Gordon C, Crane R, et al. (2002) Sum1, a component of the fission yeast eIF3 translation initiation complex, is rapidly relocalized during environmental stress and interacts with components of the 26S proteasome. Mol Biol Cell 13: 1626–1640. PubMed PMC
Hoyle NP, Castelli LM, Campbell SG, Holmes LE, Ashe MP (2007) Stress-dependent relocalization of translationally primed mRNPs to cytoplasmic granules that are kinetically and spatially distinct from P-bodies. J Cell Biol 179: 65–74. PubMed PMC
Cowart LA, Gandy JL, Tholanikunnel B, Hannun YA (2010) Sphingolipids mediate formation of mRNA processing bodies during the heat-stress response of Saccharomyces cerevisiae. Biochem J 431: 31–38. PubMed PMC
Proud CG (2005) Semin Cell Dev Biol. 16: 3–12. PubMed
Hinnebusch AG (2005) eIF2alpha kinases provide a new solution to the puzzle of substrate specificity. Nat Struct Mol Biol 12: 835–838. PubMed
Pavitt GD, Ramaiah KV, Kimball SR, Hinnebusch AG (1998) eIF2 independently binds two distinct eIF2B subcomplexes that catalyze and regulate guanine-nucleotide exchange. Genes Dev 12: 514–526. PubMed PMC
Dang Y, Kedersha N, Low WK, Romo D, Gorospe M, et al. (2006) Eukaryotic initiation factor 2alpha-independent pathway of stress granule induction by the natural product pateamine A. J Biol Chem. 281: 32870–32878. PubMed
Mazroui R, Sukarieh R, Bordeleau ME, Kaufman RJ, Northcote P, et al. (2006) Inhibition of ribosome recruitment induces stress granule formation independently of eukaryotic initiation factor 2alpha phosphorylation. Mol Biol Cell 17: 4212–4219. PubMed PMC
Kramer S, Queiroz R, Ellis L, Webb H, Hoheisel JD, et al. (2008) Heat shock causes a decrease in polysomes and the appearance of stress granules in trypanosomes independently of eIF2{alpha} phosphorylation at Thr169. J Cell Sci 121: 3002–3014. PubMed PMC
Farny NG, Kedersha NL, Silver PA (2009) Metazoan stress granule assembly is mediated by P-eIF2alpha-dependent and -independent mechanisms. Rna 15: 1814–1821. PubMed PMC
Emara MM, Ivanov P, Hickman T, Dawra N, Tisdale S, et al. (2010) Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly. J Biol Chem 285: 10959–10968. PubMed PMC
Emara MM, Fujimura K, Sciaranghella D, Ivanova V, Ivanov P, et al. (2012) Hydrogen peroxide induces stress granule formation independent of eIF2alpha phosphorylation. Biochem Biophys Res Commun 423: 763–769. PubMed PMC
Simpson CE, Ashe MP (2012) Adaptation to stress in yeast: to translate or not? Biochem Soc Trans 40: 794–799. PubMed
Brachmann CB, Davies A, Cost GJ, Caputo E, Li J, et al. (1998) Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14: 115–132. PubMed
Robinson JS, Klionsky DJ, Banta LM, Emr SD (1988) Protein sorting in Saccharomyces cerevisiae: isolation of mutants defective in the delivery and processing of multiple vacuolar hydrolases. Mol Cell Biol 8: 4936–4948. PubMed PMC
Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual (3rd ed.). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning : a laboratory manual. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory.
Rothstein R (1991) Targeting, disruption, replacement, and allele rescue: integrative DNA transformation in yeast. Methods Enzymol 194: 281–301. PubMed
Gueldener U, Heinisch J, Koehler GJ, Voss D, Hegemann JH (2002) A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast. Nucleic Acids Res 30: e23. PubMed PMC
Ter-Avanesyan MD, Dagkesamanskaya AR, Kushnirov VV, Smirnov VN (1994) The SUP35 omnipotent suppressor gene is involved in the maintenance of the non-Mendelian determinant [psi+] in the yeast Saccharomyces cerevisiae. Genetics 137: 671–676. PubMed PMC
Derkatch IL, Chernoff YO, Kushnirov VV, Inge-Vechtomov SG, Liebman SW (1996) Genesis and variability of [PSI] prion factors in Saccharomyces cerevisiae. Genetics 144: 1375–1386. PubMed PMC
Gilks N, Kedersha N, Ayodele M, Shen L, Stoecklin G, et al. (2004) Stress granule assembly is mediated by prion-like aggregation of TIA-1. Mol Biol Cell 15: 5383–5398. PubMed PMC
Kimball SR, Horetsky RL, Ron D, Jefferson LS, Harding HP (2003) Mammalian stress granules represent sites of accumulation of stalled translation initiation complexes. Am J Physiol Cell Physiol 284: C273–284. PubMed
Anderson P, Kedersha N (2009) Stress granules. Curr Biol 19: R397–398. PubMed
Dori D, Choder M (2007) Conceptual modeling in systems biology fosters empirical findings: the mRNA lifecycle. PLoS One 2: e872. PubMed PMC
Alkalaeva EZ, Pisarev AV, Frolova LY, Kisselev LL, Pestova TV (2006) In vitro reconstitution of eukaryotic translation reveals cooperativity between release factors eRF1 and eRF3. Cell 125: 1125–1136. PubMed
Chakraburtty K (2001) Translational regulation by ABC systems. Res Microbiol 152: 391–399. PubMed
Kurata S, Nielsen KH, Mitchell SF, Lorsch JR, Kaji A, et al. (2010) Ribosome recycling step in yeast cytoplasmic protein synthesis is catalyzed by eEF3 and ATP. Proc Natl Acad Sci U S A 107: 10854–10859. PubMed PMC
Pisarev AV, Skabkin MA, Pisareva VP, Skabkina OV, Rakotondrafara AM, et al. (2010) The role of ABCE1 in eukaryotic posttermination ribosomal recycling. Mol Cell 37: 196–210. PubMed PMC
Scarcelli JJ, Viggiano S, Hodge CA, Heath CV, Amberg DC, et al. (2008) Synthetic Genetic Array Analysis in Saccharomyces cerevisiae Provides Evidence for an Interaction Between RAT8/DBP5 and Genes Encoding P-Body Components. Genetics 179: 1945–1955. PubMed PMC
Zou T, Rao JN, Liu L, Xiao L, Cui YH, et al. (2012) Polyamines inhibit the assembly of stress granules in normal intestinal epithelial cells regulating apoptosis. Am J Physiol Cell Physiol 303: C102–111. PubMed PMC
Li CH, Ohn T, Ivanov P, Tisdale S, Anderson P (2010) eIF5A promotes translation elongation, polysome disassembly and stress granule assembly. PLoS One 5: e9942. PubMed PMC
Balagopal V, Parker R (2011) Stm1 modulates translation after 80S formation in Saccharomyces cerevisiae. RNA 17: 835–842. PubMed PMC
Van Dyke N, Pickering BF, Van Dyke MW (2009) Stm1p alters the ribosome association of eukaryotic elongation factor 3 and affects translation elongation. Nucleic Acids Res 37: 6116–6125. PubMed PMC
Buchan JR, Parker R (2009) Eukaryotic stress granules: the ins and outs of translation. Mol Cell 36: 932–941. PubMed PMC
Campbell SG, Hoyle NP, Ashe MP (2005) Dynamic cycling of eIF2 through a large eIF2B-containing cytoplasmic body: implications for translation control. J Cell Biol 170: 925–934. PubMed PMC
Campbell SG, Ashe MP (2006) Localization of the translational guanine nucleotide exchange factor eIF2B: a common theme for GEFs? Cell Cycle 5: 678–680. PubMed
Mortimer RK, Johnston JR (1986) Genealogy of principal strains of the yeast genetic stock center. Genetics 113: 35–43. PubMed PMC
eIF3a Destabilization and TDP-43 Alter Dynamics of Heat-Induced Stress Granules