53BP1: pro choice in DNA repair

. 2014 Feb ; 24 (2) : 108-17. [epub] 20131004

Jazyk angličtina Země Velká Británie, Anglie Médium print-electronic

Typ dokumentu časopisecké články, Research Support, N.I.H., Extramural, práce podpořená grantem, přehledy

Perzistentní odkaz   https://www.medvik.cz/link/pmid24094932

Grantová podpora
R01 AG016642 NIA NIH HHS - United States
R37 GM049046 NIGMS NIH HHS - United States
5R37GM49046 NIGMS NIH HHS - United States
5R01AG16642 NIA NIH HHS - United States

Odkazy

PubMed 24094932
PubMed Central PMC3946699
DOI 10.1016/j.tcb.2013.09.003
PII: S0962-8924(13)00155-4
Knihovny.cz E-zdroje

The DNA damage response factor 53BP1 functions at the intersection of two major double strand break (DSB) repair pathways--promoting nonhomologous end-joining (NHEJ) and inhibiting homology-directed repair (HDR)--and integrates cellular inputs to ensure their timely execution in the proper cellular contexts. Recent work has revealed that 53BP1 controls 5' end resection at DNA ends, mediates synapsis of DNA ends, promotes the mobility of damaged chromatin, improves DSB repair in heterochromatic regions, and contributes to lethal mis-repair of DSBs in BRCA1-deficient cells. Here we review these aspects of 53BP1 and discuss new data revealing how 53BP1 is loaded onto chromatin and uses its interacting factors Rif1 and PTIP to promote NHEJ and inhibit HDR.

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Noon AT, Goodarzi AA. 53BP1-mediated DNA double strand break repair: insert bad pun here. DNA Repair (Amst) 2011;10:1071–1076. PubMed

Adams MM, Carpenter PB. Tying the loose ends together in DNA double strand break repair with 53BP1. Cell Div. 2006;1:19. PubMed PMC

Schultz LB, et al. p53 binding protein 1 (53BP1) is an early participant in the cellular response to DNA double-strand breaks. J Cell Biol. 2000;151:1381–1390. PubMed PMC

Rappold I, et al. Tumor suppressor p53 binding protein 1 (53BP1) is involved in DNA damage-signaling pathways. J Cell Biol. 2001;153:613–620. PubMed PMC

Anderson L, Henderson C, Adachi Y. Phosphorylation and rapid relocalization of 53BP1 to nuclear foci upon DNA damage. Mol Cell Biol. 2001;21:1719–1729. PubMed PMC

Takai H, Smogorzewska A, de Lange T. DNA damage foci at dysfunctional telomeres. Curr Biol. 2003;13:1549–1556. PubMed

Denchi EL, de Lange T. Protection of telomeres through independent control of ATM and ATR by TRF2 and POT1. 2007;448:1068–1071. PubMed

Celli GB, de Lange T. DNA processing is not required for ATM-mediated telomere damage response after TRF2 deletion. Nat Cell Biol. 2005;7:712–718. PubMed

Takai KK, et al. Telomere protection by TPP1/POT1 requires tethering to TIN2. Mol Cell. 2011;44:647–659. PubMed PMC

Harrigan JA, et al. Replication stress induces 53BP1-containing OPT domains in G1 cells. J Cell Biol. 2011;193:97–108. PubMed PMC

Lukas C, et al. 53BP1 nuclear bodies form around DNA lesions generated by mitotic transmission of chromosomes under replication stress. Nat Cell Biol. 2011;13:243–253. PubMed

Botuyan MV, et al. Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair. 2006;127:1361–1373. PubMed PMC

Pei H, et al. MMSET regulates histone H4K20 methylation and 53BP1 accumulation at DNA damage sites. 2011;470:124–128. PubMed PMC

Hajdu I, et al. Wolf-Hirschhorn syndrome candidate 1 is involved in the cellular response to DNA damage. Proc Natl Acad Sci U S A. 2011;108:13130–13134. PubMed PMC

Hartlerode AJ, et al. Impact of histone H4 lysine 20 methylation on 53BP1 responses to chromosomal double strand breaks. 2012;7:e49211. PubMed PMC

Hsiao KY, Mizzen CA. Histone H4 deacetylation facilitates 53BP1 DNA damage signaling and double-strand break repair. J Mol Cell Biol. 2013;5:157–165. PubMed

Doil C, et al. RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins. 2009;136:435–446. PubMed

Stewart GS, et al. The RIDDLE syndrome protein mediates a ubiquitin-dependent signaling cascade at sites of DNA damage. 2009;136:420–434. PubMed

Mailand N, et al. RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins. 2007;131:887–900. PubMed

Moudry P, et al. Ubiquitin-activating enzyme UBA1 is required for cellular response to DNA damage. Cell Cycle. 2012;11:1573–1582. PubMed

Huen MS, et al. RNF8 transduces the DNA-damage signal via histone ubiquitylation and checkpoint protein assembly. 2007;131:901–914. PubMed PMC

Kolas NK, et al. Orchestration of the DNA-damage response by the RNF8 ubiquitin ligase. 2007;318:1637–1640. PubMed PMC

Mattiroli F, et al. RNF168 ubiquitinates K13–15 on H2A/H2AX to drive DNA damage signaling. 2012;150:1182–1195. PubMed

Sanders SL, et al. Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage. 2004;119:603–614. PubMed

Mallette FA, et al. RNF8- and RNF168-dependent degradation of KDM4A/JMJD2A triggers 53BP1 recruitment to DNA damage sites. EMBO J. 2012;31:1865–1878. PubMed PMC

Meerang M, et al. The ubiquitin-selective segregase VCP/p97 orchestrates the response to DNA double-strand breaks. Nat Cell Biol. 2011;13:1376–1382. PubMed

Acs K, et al. The AAA-ATPase VCP/p97 promotes 53BP1 recruitment by removing L3MBTL1 from DNA double-strand breaks. Nat Struct Mol Biol. 2011;18:1345–1350. PubMed

Fradet-Turcotte A, et al. 53BP1 is a reader of the DNA-damage-induced H2A Lys 15 ubiquitin mark. 2013;499:50–54. PubMed PMC

Lottersberger F, et al. Role of 53BP1 oligomerization in regulating double-strand break repair. Proc Natl Acad Sci U S A. 2013;110:2146–2151. PubMed PMC

Ward I, et al. The tandem BRCT domain of 53BP1 is not required for its repair function. J Biol Chem. 2006;281:38472–38477. PubMed PMC

Zgheib O, et al. An oligomerized 53BP1 tudor domain suffices for recognition of DNA double-strand breaks. Mol Cell Biol. 2009;29:1050–1058. PubMed PMC

Celeste A, et al. Histone H2AX phosphorylation is dispensable for the initial recognition of DNA breaks. Nat Cell Biol. 2003;5:675–679. PubMed

Ward IM, et al. 53BP1 is required for class switch recombination. J Cell Biol. 2004;165:459–464. PubMed PMC

Dimitrova N, et al. 53BP1 promotes non-homologous end joining of telomeres by increasing chromatin mobility. 2008;456:524–528. PubMed PMC

Dimitrova N, de Lange T. Cell cycle dependent role of MRN at dysfunctional telomeres: ATM signaling-dependent induction of NHEJ in G1 and resection-mediated inhibition of NHEJ in G2. Mol Cell Biol. 2009;29:5552–5563. PubMed PMC

Yuan J, Chen J. MRE11-RAD50-NBS1 complex dictates DNA repair independent of H2AX. J Biol Chem. 2010;285:1097–1104. PubMed PMC

Huen MS, et al. Regulation of chromatin architecture by the PWWP domain-containing DNA damage-responsive factor EXPAND1/MUM1. Mol Cell. 2010;37:854–864. PubMed PMC

Chen WT, et al. Systematic identification of functional residues in mammalian histone H2AX. Mol Cell Biol. 2013;33:111–126. PubMed PMC

Giunta S, Belotserkovskaya R, Jackson SP. DNA damage signaling in response to double-strand breaks during mitosis. J Cell Biol. 2010;190:197–207. PubMed PMC

Nelson G, Buhmann M, von Zglinicki T. DNA damage foci in mitosis are devoid of 53BP1. Cell Cycle. 2009;8:3379–3383. PubMed

Joo HY, et al. Regulation of cell cycle progression and gene expression by H2A deubiquitination. 2007;449:1068–1072. PubMed

DiTullio RA, Jr, et al. 53BP1 functions in an ATM-dependent checkpoint pathway that is constitutively activated in human cancer. Nat Cell Biol. 2002;4:998–1002. PubMed

Wang B, et al. 53BP1, a mediator of the DNA damage checkpoint. 2002;298:1435–1438. PubMed

Fernandez-Capetillo O, et al. DNA damage-induced G2-M checkpoint activation by histone H2AX and 53BP1. Nat Cell Biol. 2002;4:993–997. PubMed

Manis JP, et al. 53BP1 links DNA damage-response pathways to immunoglobulin heavy chain class-switch recombination. Nat Immunol. 2004;5:481–487. PubMed

Franco S, et al. H2AX prevents DNA breaks from progressing to chromosome breaks and translocations. Mol Cell. 2006;21:201–214. PubMed

Difilippantonio S, et al. 53BP1 facilitates long-range DNA end-joining during V(D)J recombination. 2008;456:529–533. PubMed PMC

Bothmer A, et al. 53BP1 regulates DNA resection and the choice between classical and alternative end joining during class switch recombination. J Exp Med. 2010;207:855–865. PubMed PMC

Nakamura K, et al. Genetic dissection of vertebrate 53BP1: a major role in non-homologous end joining of DNA double strand breaks. DNA Repair (Amst) 2006;5:741–749. PubMed

Xie A, et al. Distinct roles of chromatin-associated proteins MDC1 and 53BP1 in mammalian double-strand break repair. Mol Cell. 2007;28:1045–1057. PubMed PMC

Iwabuchi K, et al. 53BP1 contributes to survival of cells irradiated with X-ray during G1 without Ku70 or Artemis. Genes Cells. 2006;11:935–948. PubMed

Palm W, de Lange T. How shelterin protects mammalian telomeres. Annu Rev Genet. 2008;42:301–334. PubMed

Bunting SF, et al. 53BP1 inhibits homologous recombination in Brca1-deficient cells by blocking resection of DNA breaks. 2010;141:243–254. PubMed PMC

Bouwman P, et al. 53BP1 loss rescues BRCA1 deficiency and is associated with triple-negative and BRCA-mutated breast cancers. Nat Struct Mol Biol. 2010;17:688–695. PubMed PMC

Cao L, et al. A selective requirement for 53BP1 in the biological response to genomic instability induced by Brca1 deficiency. Mol Cell. 2009;35:534–541. PubMed PMC

Moynahan ME, et al. Brca1 controls homology-directed DNA repair. Mol Cell. 1999;4:511–518. PubMed

Bhattacharyya A, et al. The breast cancer susceptibility gene BRCA1 is required for subnuclear assembly of Rad51 and survival following treatment with the DNA cross-linking agent cisplatin. J Biol Chem. 2000;275:23899–23903. PubMed

Scully R, et al. Dynamic changes of BRCA1 subnuclear location and phosphorylation state are initiated by DNA damage. 1997;90:425–435. PubMed

Chen JJ, et al. BRCA1, BRCA2, and Rad51 operate in a common DNA damage response pathway. Cancer Res. 1999;59:1752s–1756s. PubMed

Snouwaert JN, et al. BRCA1 deficient embryonic stem cells display a decreased homologous recombination frequency and an increased frequency of non-homologous recombination that is corrected by expression of a brca1 transgene. 1999;18:7900–7907. PubMed

Farmer H, et al. Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy. 2005;434:917–921. PubMed

Bryant HE, et al. Specific killing of BRCA2-deficient tumours with inhibitors of poly(ADP-ribose) polymerase. 2005;434:913–917. PubMed

Helleday T. DNA repair as treatment target. Eur J Cancer. 2011;47(Suppl 3):S333–S335. PubMed

Jaspers JE, et al. Loss of 53BP1 causes PARP inhibitor resistance in Brca1-mutated mouse mammary tumors. Cancer Discov. 2013;3:68–81. PubMed PMC

Noon AT, et al. 53BP1-dependent robust localized KAP-1 phosphorylation is essential for heterochromatic DNA double-strand break repair. Nat Cell Biol. 2010;12:177–184. PubMed

Lee JH, et al. 53BP1 promotes ATM activity through direct interactions with the MRN complex. EMBO J. 2010;29:574–585. PubMed PMC

Goodarzi AA, et al. ATM signaling facilitates repair of DNA double-strand breaks associated with heterochromatin. Mol Cell. 2008;31:167–177. PubMed

Symington LS, Gautier J. Double-strand break end resection and repair pathway choice. Annu Rev Genet. 2011;45:247–271. PubMed

Sartori AA, et al. Human CtIP promotes DNA end resection. 2007;450:509–514. PubMed PMC

Yu X, et al. BRCA1 ubiquitinates its phosphorylation-dependent binding partner CtIP. Genes Dev. 2006;20:1721–1726. PubMed PMC

Chen L, et al. Cell cycle-dependent complex formation of BRCA1.CtIP.MRN is important for DNA double-strand break repair. J Biol Chem. 2008;283:7713–7720. PubMed

Huber LJ, et al. Impaired DNA damage response in cells expressing an exon 11-deleted murine Brca1 variant that localizes to nuclear foci. Mol Cell Biol. 2001;21:4005–4015. PubMed PMC

Schlegel BP, Jodelka FM, Nunez R. BRCA1 promotes induction of ssDNA by ionizing radiation. Cancer Res. 2006;66:5181–5189. PubMed

Reczek CR, et al. The interaction between CtIP and BRCA1 is not essential for resection-mediated DNA repair or tumor suppression. J Cell Biol. 2013;201:693–707. PubMed PMC

Zimmermann M, et al. 53BP1 regulates DSB repair using Rif1 to control 5′ end resection. 2013;339:700–704. PubMed PMC

Sfeir A, de Lange T. Removal of shelterin reveals the telomere end-protection problem. 2012;336:593–597. PubMed PMC

Bothmer A, et al. Regulation of DNA end joining, resection, and immunoglobulin class switch recombination by 53BP1. Mol Cell. 2011;42:319–329. PubMed PMC

Buonomo SB. Heterochromatin DNA replication and Rif1. Exp Cell Res. 2010;316:1907–1913. PubMed

Yamazaki S, Hayano M, Masai H. Replication timing regulation of eukaryotic replicons: Rif1 as a global regulator of replication timing. Trends Genet 2013 PubMed

Hardy CF, Sussel L, Shore D. A RAP1-interacting protein involved in transcriptional silencing and telomere length regulation. Genes Dev. 1992;6:801–814. PubMed

Xu L, Blackburn EH. Human Rif1 protein binds aberrant telomeres and aligns along anaphase midzone microtubules. J Cell Biol. 2004;167:819–830. PubMed PMC

Silverman J, et al. Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint. Genes Dev. 2004;18:2108–2119. PubMed PMC

Buonomo S, et al. Mammalian Rif1 contributes to replication stress survival and homology-directed repair. J Cell Biol. 2009;187:385–398. PubMed PMC

Escribano-Diaz C, et al. A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice. Mol Cell. 2013;49:872–883. PubMed

Feng L, et al. RIF1 Counteracts BRCA1-mediated End Resection during DNA Repair. J Biol Chem. 2013;288:11135–11143. PubMed PMC

Chapman JR, et al. RIF1 is essential for 53BP1-dependent nonhomologous end joining and suppression of DNA double-strand break resection. Mol Cell. 2013;49:858–871. PubMed PMC

Di Virgilio M, et al. Rif1 prevents resection of DNA breaks and promotes immunoglobulin class switching. 2013;339:711–715. PubMed PMC

Xu D, et al. Rif1 provides a new DNA-binding interface for the Bloom syndrome complex to maintain normal replication. EMBO J. 2010;29:3140–3155. PubMed PMC

Sreesankar E, et al. Functional diversification of yeast telomere associated protein, Rif1, in higher eukaryotes. BMC Genomics. 2012;13:255. PubMed PMC

Chapman JR, et al. BRCA1-associated exclusion of 53BP1 from DNA damage sites underlies temporal control of DNA repair. J Cell Sci. 2012;125:3529–3534. PubMed PMC

Callen E, et al. 53BP1 Mediates Productive and Mutagenic DNA Repair through Distinct Phosphoprotein Interactions. 2013;153:1266–1280. PubMed PMC

Jowsey PA, Doherty AJ, Rouse J. Human PTIP facilitates ATM-mediated activation of p53 and promotes cellular resistance to ionizing radiation. J Biol Chem. 2004;279:55562–55569. PubMed

Munoz IM, et al. Phospho-epitope binding by the BRCT domains of hPTIP controls multiple aspects of the cellular response to DNA damage. Nucleic Acids Res. 2007;35:5312–5322. PubMed PMC

Gong Z, et al. Accumulation of Pax2 transactivation domain interaction protein (PTIP) at sites of DNA breaks via RNF8-dependent pathway is required for cell survival after DNA damage. J Biol Chem. 2009;284:7284–7293. PubMed PMC

Wang X, Takenaka K, Takeda S. PTIP promotes DNA double-strand break repair through homologous recombination. Genes Cells. 2010;15:243–254. PubMed

Munoz IM, Rouse J. Control of histone methylation and genome stability by PTIP. EMBO Rep. 2009;10:239–245. PubMed PMC

Manke IA, et al. BRCT repeats as phosphopeptide-binding modules involved in protein targeting. 2003;302:636–639. PubMed

Wu J, et al. PTIP regulates 53BP1 and SMC1 at the DNA damage sites. J Biol Chem. 2009;284:18078–18084. PubMed PMC

Harding SM, Bristow RG. Discordance between phosphorylation and recruitment of 53BP1 in response to DNA double-strand breaks. Cell Cycle. 2012;11:1432–1444. PubMed

Rai R, et al. The function of classical and alternative non-homologous end-joining pathways in the fusion of dysfunctional telomeres. EMBO J. 2010;29:2598–2610. PubMed PMC

Xia Z, et al. Negative cell cycle regulation and DNA damage-inducible phosphorylation of the BRCT protein 53BP1. J Biol Chem. 2001;276:2708–2718. PubMed

Adams MM, et al. 53BP1 oligomerization is independent of its methylation by PRMT1. Cell Cycle. 2005;4:1854–1861. PubMed

Lo KW, et al. The 8-kDa dynein light chain binds to p53-binding protein 1 and mediates DNA damage-induced p53 nuclear accumulation. J Biol Chem. 2005;280:8172–8179. PubMed

Butler LR, et al. The proteasomal de-ubiquitinating enzyme POH1 promotes the double-strand DNA break response. EMBO J. 2012;31:3918–3934. PubMed PMC

Mosbech A, et al. The Deubiquitylating Enzyme USP44 Counteracts the DNA Double-strand Break Response Mediated by the RNF8 and RNF168 Ubiquitin Ligases. J Biol Chem. 2013;288:16579–16587. PubMed PMC

Nicassio F, et al. Human USP3 is a chromatin modifier required for S phase progression and genome stability. Curr Biol. 2007;17:1972–1977. PubMed

Shao G, et al. The Rap80-BRCC36 de-ubiquitinating enzyme complex antagonizes RNF8-Ubc13-dependent ubiquitination events at DNA double strand breaks. Proc Natl Acad Sci U S A. 2009;106:3166–3171. PubMed PMC

Nakada S, et al. Non-canonical inhibition of DNA damage-dependent ubiquitination by OTUB1. 2010;466:941–946. PubMed

Sato Y, et al. Molecular basis of Lys-63-linked polyubiquitination inhibition by the interaction between human deubiquitinating enzyme OTUB1 and ubiquitin-conjugating enzyme UBC13. J Biol Chem. 2012;287:25860–25868. PubMed PMC

Shanbhag NM, et al. ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks. 2010;141:970–981. PubMed PMC

Zhang D, et al. A role for the deubiquitinating enzyme USP28 in control of the DNA-damage response. 2006;126:529–542. PubMed

Gudjonsson T, et al. TRIP12 and UBR5 suppress spreading of chromatin ubiquitylation at damaged chromosomes. 2012;150:697–709. PubMed

Tang J, et al. Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination. Nat Struct Mol Biol. 2013;20:317–325. PubMed PMC

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