Spectrum and frequencies of non GJB2 gene mutations in Czech patients with early non-syndromic hearing loss detected by gene panel NGS and whole-exome sequencing
Jazyk angličtina Země Dánsko Médium print-electronic
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
32860223
DOI
10.1111/cge.13839
Knihovny.cz E-zdroje
- Klíčová slova
- hearing loss, next-generation sequencing, non GJB2 patients, non-syndromic hearing loss,
- MeSH
- dítě MeSH
- dospělí MeSH
- genetická predispozice k nemoci MeSH
- hluchota embryologie genetika patologie MeSH
- kadherinové proteiny MeSH
- kadheriny genetika MeSH
- konexin 26 genetika MeSH
- lidé MeSH
- membránové glykoproteiny genetika MeSH
- membránové proteiny genetika MeSH
- mezibuněčné signální peptidy a proteiny genetika MeSH
- mladiství MeSH
- mladý dospělý MeSH
- mutace genetika MeSH
- myosiny genetika MeSH
- nádorové proteiny genetika MeSH
- nedoslýchavost epidemiologie genetika patologie MeSH
- sekvenování exomu MeSH
- serinové endopeptidasy genetika MeSH
- transportní proteiny genetika MeSH
- vysoce účinné nukleotidové sekvenování MeSH
- Check Tag
- dítě MeSH
- dospělí MeSH
- lidé MeSH
- mladiství MeSH
- mladý dospělý MeSH
- mužské pohlaví MeSH
- ženské pohlaví MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Česká republika epidemiologie MeSH
- Názvy látek
- CDH23 protein, human MeSH Prohlížeč
- GJB2 protein, human MeSH Prohlížeč
- kadherinové proteiny MeSH
- kadheriny MeSH
- konexin 26 MeSH
- LOXHD1 protein, human MeSH Prohlížeč
- membránové glykoproteiny MeSH
- membránové proteiny MeSH
- mezibuněčné signální peptidy a proteiny MeSH
- MYO15A protein, human MeSH Prohlížeč
- myosiny MeSH
- nádorové proteiny MeSH
- OTOF protein, human MeSH Prohlížeč
- OTOG protein, human MeSH Prohlížeč
- serinové endopeptidasy MeSH
- STRC protein, human MeSH Prohlížeč
- TMPRSS3 protein, human MeSH Prohlížeč
- transportní proteiny MeSH
Non-syndromic autosomal recessive hearing loss is an extremely heterogeneous disease caused by mutations in more than 80 genes. We examined Czech patients with early/prelingual non-syndromic, presumably genetic hearing loss (NSHL) without known cause after GJB2 gene testing. Four hundred and twenty-one unrelated patients were examined for STRC gene deletions with quantitative comparative fluorescent PCR (QCF PCR), 197 unrelated patients with next-generation sequencing by custom-designed NSHL gene panels and 19 patients with whole-exome sequencing (WES). Combining all methods, we discovered the cause of the disease in 54 patients. The most frequent type of NSHL was DFNB16 (STRC), which was detected in 22 patients, almost half of the clarified patients. Other biallelic pathogenic mutations were detected in the genes: MYO15A, LOXHD1, TMPRSS3 (each gene was responsible for five clarified patients, CDH23 (four clarified patients), OTOG and OTOF (each gene was responsible for two clarified patients). Other genes (AIFM1, CABP2, DIAPH1, PTPRQ, RDX, SLC26A4, TBC1D24, TECTA, TMC1) that explained the cause of hearing impairment were further detected in only one patient for each gene. STRC gene mutations, mainly deletions remain the most frequent NSHL cause after mutations in the GJB2.
Zobrazit více v PubMed
Morton CC, Nance WE. Newborn hearing screening-a silent revolution. N Engl J Med. 2006;354(20):2151-2164.
Marazita ML, Ploughman LM, Rawlings B, Remington E, Arnos KS, Nance WE. Genetic epidemiological studies of early-onset deafness in the U.S. school-age population. Am J Med Genet. 1993;46(5):486-491.
Gorlin RJ, Toriello HV, Cohen MM Jr. Hereditary Hearing Loss and its Syndromes. New York: Oxford University Press; 1995.
Wemeau JL, Kopp P. Pendred syndrome. Best Pract Res Clin Endocrinol Metab. 2017;31(2):213-224.
Seeman P, Malikova M, Raskova D, et al. Spectrum and frequencies of mutations in the GJB2 (Cx26) gene among 156 Czech patients with pre-lingual deafness. Clin Genet. 2004;66(2):152-157.
Seeman P, Sakmaryova I. High prevalence of the IVS 1 + 1 G to a/GJB2 mutation among Czech hearing impaired patients with monoallelic mutation in the coding region of GJB2. Clin Genet. 2006;69(5):410-413.
Del Castillo I, Moreno-Pelayo MA, Del Castillo FJ, et al. Prevalence and evolutionary origins of the del(GJB6-D13S1830) mutation in the DFNB1 locus in hearing-impaired subjects: a multicenter study. Am J Hum Genet. 2003;73(6):1452-1458.
Seeman P, Bendova O, Raskova D, Malikova M, Groh D, Kabelka Z. Double heterozygosity with mutations involving both the GJB2 and GJB6 genes is a possible, but very rare, cause of congenital deafness in the Czech population. Ann Hum Genet. 2005;69(Pt 1):9-14.
Markova SP, Brozkova DS, Lassuthova P, et al. STRC gene mutations, mainly large deletions, are a very important cause of early-onset hereditary hearing loss in the Czech population. Genet Test Mol Biomarkers. 2018;22(2):127-134.
Markova S, Safka Brozkova D, Meszarosova A, et al. Mutations in eight small DFNB genes are not a frequent cause of non-syndromic hereditary hearing loss in Czech patients. Int J Pediatr Otorhinolaryngol. 2016;86:27-33.
Plevova P, Tvrda P, Paprskarova M, et al. Genetic Aetiology of Nonsyndromic hearing loss in Moravia-Silesia. Medicina (Kaunas). 2018;54(2):1-9.
Vona B, Hofrichter MA, Neuner C, et al. DFNB16 is a frequent cause of congenital hearing impairment: implementation of STRC mutation analysis in routine diagnostics. Clin Genet. 2015;87(1):49-55.
Francey LJ, Conlin LK, Kadesch HE, et al. Genome-wide SNP genotyping identifies the Stereocilin (STRC) gene as a major contributor to pediatric bilateral sensorineural hearing impairment. Am J Med Genet A. 2012;158A(2):298-308.
Knijnenburg J, Oberstein SA, Frei K, et al. A homozygous deletion of a normal variation locus in a patient with hearing loss from non-consanguineous parents. J Med Genet. 2009;46(6):412-417.
Cada Z, Safka Brozkova D, Balatkova Z, et al. Moderate sensorineural hearing loss is typical for DFNB16 caused by various types of mutations affecting the STRC gene. Eur Arch Otorhinolaryngol. 2019;276(12):3353-3358.
Friedman TB, Liang Y, Weber JL, et al. A gene for congenital, recessive deafness DFNB3 maps to the pericentromeric region of chromosome 17. Nat Genet. 1995;9(1):86-91.
Schraders M, Ruiz-Palmero L, Kalay E, et al. Mutations of the gene encoding otogelin are a cause of autosomal-recessive nonsyndromic moderate hearing impairment. Am J Hum Genet. 2012;91(5):883-889.
Grillet N, Schwander M, Hildebrand MS, et al. Mutations in LOXHD1, an evolutionarily conserved stereociliary protein, disrupt hair cell function in mice and cause progressive hearing loss in humans. Am J Hum Genet. 2009;85(3):328-337.
Edvardson S, Jalas C, Shaag A, et al. A deleterious mutation in the LOXHD1 gene causes autosomal recessive hearing loss in Ashkenazi Jews. Am J Med Genet A. 2011;155A(5):1170-1172.
Sommen M, Schrauwen I, Vandeweyer G, et al. DNA diagnostics of hereditary hearing loss: a targeted Resequencing approach combined with a mutation classification system. Hum Mutat. 2016;37(8):812-819.