Conformational transition of the Ixodes ricinus salivary serpin Iripin-4
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články
Grantová podpora
CZ.02.1.01/0.0/0.0/15_003/0000441
European Regional Development Fund
19-14704Y
Grantová Agentura České Republiky
04-046/2022/P
Jihočeská Univerzita v Českých Budějovicích
PubMed
37092969
PubMed Central
PMC10167670
DOI
10.1107/s2059798323002322
PII: S2059798323002322
Knihovny.cz E-zdroje
- Klíčová slova
- Iripin-4, Ixodes ricinus, X-ray structure, cleaved conformation, native conformation, serpins,
- MeSH
- arginin MeSH
- klíště * MeSH
- konformace proteinů MeSH
- molekulární modely MeSH
- serpiny * chemie MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- arginin MeSH
- serpiny * MeSH
Iripin-4, one of the many salivary serpins from Ixodes ricinus ticks with an as-yet unexplained function, crystallized in two different structural conformations, namely the native partially relaxed state and the cleaved serpin. The native structure was solved at a resolution of 2.3 Å and the structure of the cleaved conformation was solved at 2.0 Å resolution. Furthermore, structural changes were observed when the reactive-centre loop transitioned from the native conformation to the cleaved conformation. In addition to this finding, it was confirmed that Glu341 represents a primary substrate-recognition site for the inhibitory mechanism. The presence of glutamate instead of the typical arginine in the P1 recognition site of all structurally characterized I. ricinus serpins (PDB entries 7b2t, 7pmu and 7ahp), except for the tyrosine in the P1 site of Iripin-2 (formerly IRS-2; PDB entry 3nda), would explain the absence of inhibition of the tested proteases that cleave their substrate after arginine. Further research on Iripin-4 should focus on functional analysis of this interesting serpin.
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