De novo Ixodes ricinus salivary gland transcriptome analysis using two next-generation sequencing methodologies
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články, Research Support, N.I.H., Intramural, práce podpořená grantem
Grantová podpora
Intramural NIH HHS - United States
PubMed
23964076
PubMed Central
PMC3834774
DOI
10.1096/fj.13-232140
PII: fj.13-232140
Knihovny.cz E-zdroje
- Klíčová slova
- cDNA, high-throughput annotation, molecular evolution, public database, tick feeding, tick life stages,
- MeSH
- fylogeneze MeSH
- klíště chemie genetika metabolismus MeSH
- komplementární DNA chemie genetika MeSH
- molekulární evoluce MeSH
- molekulární sekvence - údaje MeSH
- proteiny členovců chemie genetika MeSH
- sekvence nukleotidů MeSH
- sekvenční analýza DNA MeSH
- slinné žlázy metabolismus MeSH
- terciární struktura proteinů MeSH
- transkriptom * MeSH
- vysoce účinné nukleotidové sekvenování MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Research Support, N.I.H., Intramural MeSH
- Názvy látek
- komplementární DNA MeSH
- proteiny členovců MeSH
Tick salivary gland (SG) proteins possess powerful pharmacologic properties that facilitate tick feeding and pathogen transmission. For the first time, SG transcriptomes of Ixodes ricinus, an important disease vector for humans and animals, were analyzed using next-generation sequencing. SGs were collected from different tick life stages fed on various animal species, including cofeeding of nymphs and adults on the same host. Four cDNA samples were sequenced, discriminating tick SG transcriptomes of early- and late-feeding nymphs or adults. In total, 441,381,454 pyrosequencing reads and 67,703,183 Illumina reads were assembled into 272,220 contigs, of which 34,560 extensively annotated coding sequences are disclosed; 8686 coding sequences were submitted to GenBank. Overall, 13% of contigs were classified as secreted proteins that showed significant differences in the transcript representation among the 4 SG samples, including high numbers of sample-specific transcripts. Detailed phylogenetic reconstructions of two relatively abundant SG-secreted protein families demonstrated how this study improves our understanding of the molecular evolution of hematophagy in arthropods. Our data significantly increase the available genomic information for I. ricinus and form a solid basis for future tick genome/transcriptome assemblies and the functional analysis of effectors that mediate the feeding physiology and parasite-vector interaction of I. ricinus.
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