Microsatellite repeat mapping shows inner chromosomal diversification in highly conserved karyotypes of Asian cyprinid fishes
Status PubMed-not-MEDLINE Jazyk angličtina Země Bulharsko Médium electronic-ecollection
Typ dokumentu časopisecké články
PubMed
40201068
PubMed Central
PMC11976306
DOI
10.3897/compcytogen.19.141557
PII: 141557
Knihovny.cz E-zdroje
- Klíčová slova
- Chromosomal rearrangements, Family Cyprinidae, Fluorescence in situ hybridization (FISH), Microsatellites, comparative cytogenetics,
- Publikační typ
- časopisecké články MeSH
The barbels of the subfamilies ´Poropuntinae´ and Smiliogastrinae within the family Cyprinidae play a significant role as a food source for fish in artisanal fisheries and are highly valued as ornamental fish in Thailand. In this study, we employed both conventional and molecular cytogenetics to analyze the karyotype of 15 fish species from two cyprinid lineages. All analyzed species had a diploid chromosome number of 2n = 50. Despite sharing the same 2n, our analyses revealed species-specific distribution patterns of the mapped microsatellite motifs [(CA)₁₅, (TA)₁₅, (CAC)₁₀, and (CGG)₁₀]. They were predominantly found at telomeric sites of all-to-few chromosomes. Additionally, some species exhibited a widespread distribution of the mapped microsatellites across the chromosomes while others showed no signal. These variations reflect the evolutionary divergence and chromosomal diversity within the cyprinids. Thus, our findings support the 2n stability in cyprinoid lineages while emphasizing the intrachromosomal evolutionary diversity accompanied by species-specific microsatellite distribution.
Departamento de Genética e Evolução Universidade Federal de São Carlos São Carlos São Paulo Brazil
Department of Biology Faculty of Science Khon Kaen University Muang Khon Kaen 40002 Thailand
Zobrazit více v PubMed
Arai R. (2011) Fish Karyotypes: A Check List. Springer, Tokyo, Japan, 340 pp. 10.1007/978-4-431-53877-6 DOI
Bertollo LAC, Cioffi MB, Moreira-Filho O. (2015) Direct chromosome preparationfrom freshwater teleost fishes. In: Ozouf-Costaz C, Pisano E, Foresti F, Almeida Toledo LF. (Eds) Fish Cytogenetic Techniques.Enfield USA: CRC Press, 21–26. 10.1201/b18534-4 DOI
Buasriyot P, Sassi FMC, Donbundit N, Supiwong W, Kaewsri S, Jumrusthanasan S, Seetapan K, Pinthong K, Tanomtong A, Yanukun K, Muanglen N, Liehr T. (2024) Comparative karyotypic study of fifteen cyprinids (Cyprinidae, Cyprininae) species. An insight into the chromosomal evolution of the tribe Systomini. PLOS ONE 19(7): e0305828. 10.1371/journal.pone.0305828 PubMed DOI PMC
Chaiyasan P, Mingkwan B, Jantarat S, Suwannapoom C, Cioffi MB, Liehr T, Talumphai S, Tanomtong A, Supiwong W. (2021) Classical and molecular cytogenetics of DOI
Chaiyasan P, Phimphan S, Sarasan T, Juntaree S, Tanomtong A, Pinmongkhonkul, Supiwong W. (2021) First report on nucleolar organizer regions (NORs) polymorphism and constitutive heterochromatin of Moonlight gourami, DOI
Chaiyasan P, Supiwong W, Saenjundaeng P, Seetapan K, Pinmongkhonkul S, Tanomtong A. (2018) A Report on classical cytogenetics of Highfin barb fish, DOI
Chaiyasan P, Supiwong W, Tanomtong A. (2020) Standardized karyotype and idiogram of White eye barb (
Chantapan T. (2015) Standardized karyotype and ideogram of cyprinid fishes (Subfamily: Cyprininae) in Thailand. [Master Dissertation]. Khon Kaen: Khon Kaen University.
Cioffi MB, Bertollo LAC. (2012) Chromosomal distribution and evolution of repetitive DNAs in Fish. Genome Dynamics 7: 197–221. 10.1159/000337950 PubMed DOI
Cioffi MB, Bertollo LAC, Villa MA, Oliveira EA, Tanomtong A, Yano W, Supiwong W, Chaveerach A. (2015) Genomic organization of repetitive DNA elements and its implications for the thromosomal evolution of Channid fishes (Actinopterygii, Perciformes). PLOS ONE 10(6): e0130199. 10.1371/journal.pone.0130199 PubMed DOI PMC
Cioffi MB, Franco W, Ferreira R, Carlos BLA. (2012) Chromosomes as tools for discovering biodiversity-the case of Erythrinidae fish family. In: Tirunilai P. (Ed.) Recent Trends in Cytogenetic Studies – Methodologies and Applications.London, United Kingdom: InTech, 125–146.
Cioffi MB, Kejnovsky E, Bertollo LAC. (2011) The chromosomal distribution of microsatellite repeats in the genome of the Wolf fish PubMed DOI
Collares-Pereira MJ, Propero MI, Bileu RI, Rodrigues E. (1998) Leuciscus (Pisces, Cyprinidae) karyotypes: transect of Portuguese populations. Genetics and Molecular Biology 21(1): 63–69. 10.1590/S1415-47571998000100011 DOI
Demarais BD, Dowling TE, Douglas ME, Minckley WL, Marsh PC. (1992) Origin of PubMed DOI PMC
Dernberg AF, Sedat JW, Hawley RS. (1996) Direct evidence of role for heterochromatin in meiotic chromosome segregation. Cell 86: 135–146. 10.1016/S0092-8674(00)80084-7 PubMed DOI
Ditcharoen S, Bertollo LAC, Ráb P, Hnatkova MWF, Liehr T, Tanomtomg A, Triantaphyllidis C, Ozouf-Costaz C, Tongnunui S, Pengseng P, Supiwong W, Aroutiounian R, Cioffi MB. (2019) Genomic organization of repetitive DNA elements and extensive karyotype diversity of Silurid Catfishes (Teleostei: Siluriformes): A Comparative Cytogenetic Approach. International Journal of Molecular Sciences 20(3545): 1–18. 10.3390/ijms20143545 PubMed DOI PMC
Ditcharoen S, Sassi FMC, Bertollo LAC, Molina WF, Liehr T, Saengjundaeng P, Tanomtong A, Supiwong W, Suwannapoom C, Cioffi MB. (2020) Comparative chromosomal mapping of microsatellite repeats reveals divergent patterns of accumulation in Siluridae (Teleostei: Siluriformes) species. Genetics and Molecular Biology 43(4): 1–11. 10.1590/1678-4685-gmb-2020-0091 PubMed DOI PMC
Donsakul T, Magtoon W, Rangsiruji A. (2005) Karyotypes of four cyprinid fishes:
Donsakul T, Magtoon W, Rangsiruji A. (2006) Karyological studies of four cyprinid fishes:
Doori ASJ, Arslan A. (2022) Karyotypes and ZZ/ZW Sex Chromosome System of Endemic Squaliusrecurvirostris (Leuciscinae, Cyprinidae) in Turkey. KSU Journal of Agriculture and Nature 25(4): 649–657. 10.18016/ksutarimdoga.vi. 915278 DOI
Ellegren H. (2004) Microsatellites: simple sequences with complex evolution. Nature Reviews Genetics 5: 435–445. 10.1038/nrg1348 PubMed DOI
Fricke R, Eschmeyer W, Fong JD. (2025) Genera / specie by family / subfamily in Eschmeyer’s Catalog of Fishes. http://researcharchive.calacademy.org/research/ichthyology/catalog/SpeciesByFamily.asp [Accessed on 6 March 2025]
Ganai FA, Yousuf AR, Dar SA, Tripathi NK, Wani SU. (2011) Cytotaxonomic status of schizothoracine fishes of
Garrido-Ramos MA. (2017) Satellite DNA: an evolving topic. Genes 8(9): 230. 10.3390/genes8090230 PubMed DOI PMC
Getlekha N, Cioffi MB, Yano CF, Maneechot N, Bertollo LAC, Supiwong W, Tanomtong A, Molina WF. (2016a) Chromosome mapping of repetitive DNAs in sergeant major fishes (Abudefdufinae, Pomacentridae): a general view on the chromosomal conservatism of the genus. Genetica 144: 567–576. 10.1007/s10709-016-9925-y PubMed DOI
Getlekha N, Molina WF, Cioffi MB, Yano CF, Maneechot N, Bertollo LAC, Supiwong W, Tanomtong A. (2016b) Repetitive DNAs highlight the role of chromosome fusions in the karyotype evolution of PubMed DOI
Haerter CAG, Blanco DR, Traldi JB, Feldberg E, Margarido VP, Lui RL. (2023) Are scattered microsatellites weak chromosomal markers? Guided mapping reveals new insights into PubMed DOI PMC
Hong Y, Zhou T. (1985) Studies on the karyotype and C-banding patterns in
Kang B, He D, Perrett L, Wang H, Hu W, Deng W, Wu Y. (2009) Fish and fisheries in the upper Mekong: current assessment of the fish community, threats and conservation. Reviews in Fish Biology and Fisheries 19: 465–480. 10.1007/s11160-009-9114-5 DOI
Khensuwan S, Sassi FMC, Moraes RLR, Jantarat S, Seetapan K, Phintong K, Thongnetr W, Kaewsri S, Jumrusthanasan S, Supiwong W, Ráb P, Tanomtong A, Liehr T, Cioffi MB. (2023) Chromosomes of Asian cyprinid fishes: genomic differences in conserved karyotypes of ‘Poropuntiinae’ (Teleostei, Cyprinidae). Animals 13(8): 1415. 10.3390/ani13081415 PubMed DOI PMC
Khensuwan S, Sassi FMC, Moraes RLR, Ráb P, Liehr T, Supiwong W, Seetapan K, Tanomtong A, Tantisuwichwong N, Arunsang S, Buasriyot P, Tongnunui S, Cioffi MB. (2024) Chromosomes of Asian cyprinid fishes: novel insight into the chromosomal evolution of Labeoninae (Teleostei, Cyprinidae). PLOS ONE 19(2): e0292689. 10.1371/journal.pone.0292689 PubMed DOI PMC
Khensuwan S, Supiwong W, Suwannapoom C, Buasriyot P, Jantarat S, Thongnetr W, Muanglen N, Kaewmad P, Saenjundaeng P, Seetapan K, Liehr T, Tanomtong A. (2023) A comparative cytogenetic study of PubMed DOI PMC
Kubat Z, Hobza R, Vyskot B, Kejnovsky E. (2008) Microsatellite accumulation in the Y chromosome of PubMed DOI
Kushwaha B, Baisvar VS, Kumar R. (2021) 18S rDNA Mapping revealed conservation and rearrangements of chromosome segments in Two DOI
Lei Y, Zhou Y, Price M, Song Z. (2021) Genome-wide characterization of microsatellite DNA in fishes: survey and analysis of their abundance and frequency in genome-specific regions. BMC Genomics 22: 421. 10.1186/s12864-021-07752-6 PubMed DOI PMC
Levan A, Fredga K, Sandberg A. (1964) Nomenclature for centromeric position on chromosomes. Hereditas 52: 201–220. 10.1111/j.1601-5223.1964.tb01953.x DOI
Li YC, Korol AB, Fahima T, Beiles A, Nevo E. (2002) Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Molecular Ecology 11(12): 2453–65. 10.1046/j.1365-294X.2002.01643.x PubMed DOI
López-Flores L, Garrido-Ramos MA. (2012) The repetitive DNA content of eukaryotic genomes. Genome Dyn 7: 1–28. 10.1159/000337118 PubMed DOI
Machado CRD, Domit C, Pucci MB, Gazolla CB, Glugoski L, Nogaroto V, Vicari MR. (2020) Heterochromatin and microsatellites detection in karyotypes of four sea turtle species: Interspecific chromosomal differences. Genetics and Molecular Biology 43(4): e20200213. 10.1590/1678-4685-gmb-2020-0213 PubMed DOI PMC
Magtoon W, Arai R. (1989) Karyotypes of five
Maneechot N, Yano CF, Bertollo LAC, Getlekha N, Molina WF, Ditcharoen S, Tengjaroenkul B, Supiwong S, Tanomtong A, Cioffi MB. (2016) Genomic organization of repetitive DNAs highlights chromosomal evolution in the genus PubMed DOI PMC
Mingkwan B, Sassi FMC, Muanglenm N, Pinmongkhonkul S, Pinthong K, Tongnunui S, Yeesin P, Tanomtong A, Liehr T, Cioffi MB, Supiwong W. (2023) Evolutionary tracks of chromosomal diversification in DOI
Messier W, Li SH, Stewart CB. (1996) The birth of microsatellites. Nature 381: 483. 10.1038/381483a0 PubMed DOI
Moraes RLR, Bertollo LAC, Marin MMF, Yano CF, Hatanaka T, Barby FF, Troy WP, Cioffi MB. (2017) Evolutionary relationships and cytotaxonomy considerations in the genus PubMed DOI
Moraes RLR, Sember A, Bertollo LAC, Oliveira EA, Ráb P, Hatanaka T, Marinho MMF, Liehr T, Al-Rikabi ABH, Feldberg E, Viana PF, Cioffi MB. (2019) Comparative cytogenetics and neo-Y formation in small-sized fish species of the genus PubMed DOI PMC
Myers N, Mittermeier RA, Mittermeier CG, Fonseca GAB, Kent J. (2000) Biodiversity hotspots for conservation priorities. Nature 403: 853–858. 10.1038/35002501 PubMed DOI
Padeken J, Zeller P, Gasser SM. (2015) Repeat DNA in genome organization and stability. Current Opinion in Genetics and Development 31: 12–19. 10.1016/j.gde.2015.03.009 PubMed DOI
Pissaparn M, Phimphan S, Chaiyasan P, Tanoamtong A, Liehr T, Suwannapoom C, Reungsing M, Supiwong W. (2020) First chromosome analysis of Thai pufferfish DOI
Phimphan S, Chaiyasan P, Suwannapoom C, Reungsing M, Juntaree S, Tanomtong A, Supiwong W. (2020) Comparative karyotype study of three cyprinids (Cyprinidae, Cyprininae) in Thailand by classical cytogenetic and FISH techniques. Comparative Cytogenetics 14(4): 597–612. 10.3897/CompCytogen.v14i4.54428 PubMed DOI PMC
Prazdnikov DV. (2023) Chromosome complements of PubMed DOI PMC
Saenjundaeng P, Supiwong W, Sassi FMC, Bertollo LAC, Ráb P, Kretschmer R, Tanomtong A, Suwannapoom C, Reungsing M, Cioffi MB. (2020) Chromosomes of Asian cyprinid fishes: variable Karyotype patterns and evolutionary trends in the genus PubMed DOI PMC
Sassi FMC, Oliveira EA, Bertollo LAC, Nirchio M, Hatanaka T, Marinho MMF, Moreira-Filho O, Aroutiounian R, Liehr T, Al-Rikabi ABH, Cioffi MB. (2019) Chromosomal evolution and evolutionary relationships of PubMed DOI PMC
Schneider CH, Gross MC, Terencio ML, Carmo EJ, Martins C, Feldberg E. (2013) Evolutionary dynamics of retrotransposable elements Rex1, Rex3 and Rex6 in neotropical cichlids genome. BMC Evolutionary Biology 13: 152. 10.1186/1471-2148-13-152 PubMed DOI PMC
Seetapan K. (2007) Karyotypes of sex fish species of the family Cyprinidae. https://kukr.lib.ku.ac.th/kukr_es/index.php?/BKN/search_detail/result/10360 [Accessed on 23 September 2024]
Sola L, Gornung E. (2001) Classical and molecular cytogenetics of the zebrafish, PubMed DOI
Suntronpong A, Thapana W, Twilprawat P, Prakhongcheep O, Somyong S, Muangmai N, Peyachoknagul S, Srikulnath K. (2017) Karyological characterization and identification of four repetitive element groups (the 18S – 28S rRNA gene, telomeric sequences, microsatellite repeat motifs, PubMed DOI PMC
Supiwong W, Liehr T, Cioffi MB, Chaveerach A, Kosyakova N, Pinthong K, Tanee T, Tanomtong A. (2014) Chromosomal evolution in naked catfishes (Bagridae, Siluriformes): a comparative chromosome mapping study. Zoologischer Anzeiger 253(4): 316–320. 10.1016/j.jcz.2014.02.004 DOI
Supiwong W, Phimphan S, Kaewmad P, Saenjundaeng P, Jantarat S, Tanomtong A. (2017) First cytogenetic study of the whitecheek monocle bream, DOI
Supiwong W, Wongchantra P, Thongnetr W, Mingkwan B, Chaiyasan P, Pinmongkhonkul S, Pinthong K, Tanomtomg A. (2021) Comparative cytogenetic analysis of fishes in the genus DOI
Tan M, Armbruster JW. (2018) Phylogenetic classification of extant genera of fishes of the order Cypriniformes (Teleostei, Ostariophysi). Zootaxa 4476: 6–39. 10.11646/zootaxa.4476.1.4 PubMed DOI
Viana PF, Feldberg E, Takagui FH, Menezes S, Vogt RC, Ezaz T. (2022) Matamatas PubMed DOI PMC
Xu D, Lou B, Bertollo LAC, Cioffi MB. (2013) Chromosomal mapping of microsatellite repeats in the rock bream fish PubMed DOI PMC
Yang L, Sado T, Vincent Hirt M, Pasco-Viel E, Arunachalam M, Li J, Wang X, Freyhof J, Saitoh K, Simons AM, Miya M, He S, Mayden RL. (2015) Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes). Molecular Phylogenetics and Evolution 85: 97–116. 10.1016/j.ympev.2015.01.014 PubMed DOI
Yano CF, Bertollo LAC, Cioffi MB. (2017) Fish-FISH: molecular cytogenetics in fish species. In: Liehr T. (Ed.) Fluorescence In Situ Hybridization (FISH)-application guide.Springer, Berlin, Heidelberg, Germany, 429–444. 10.1007/978-3-662-52959-1_44 DOI
Yano CF, Poltronieri J, Bertollo LAC, Artoni RF, Liehr T, Cioffi MB. (2014) Chromosomal mapping of repetitive DNAs in PubMed DOI PMC
Yeesin P, Buasriyot P, Ditcharoen S, Chaiyasan P, Suwannapoom C, Juntaree S. (2021) Comparative study of four PubMed DOI PMC
Yu XY, Yu XJ. (1990) A schizothoracine fish species,