Chromosomes of Asian cyprinid fishes: Variable karyotype patterns and evolutionary trends in the genus Osteochilus (Cyprinidae, Labeoninae, "Osteochilini")
Status PubMed-not-MEDLINE Jazyk angličtina Země Brazílie Médium electronic-ecollection
Typ dokumentu časopisecké články
PubMed
33156892
PubMed Central
PMC7783954
DOI
10.1590/1678-4685-gmb-2020-0195
PII: S1415-47572020000600206
Knihovny.cz E-zdroje
- Publikační typ
- časopisecké články MeSH
The Cyprinidae family is a highly diversified but demonstrably monophyletic lineage of cypriniform fishes. Among them, the genus Osteochilus contains 35 recognized valid species distributed from India, throughout Myanmar, Laos, Thailand, Malaysia, Indonesian archipelago to southern China. In this study, karyotypes and other chromosomal characteristics of five Osteochilus species occurring in Thailand, namely O. lini, O. melanopleura, O. microcephalus, O. vittatus and O. waandersii were examined using conventional and molecular cytogenetic protocols. Our results showed they possessed diploid chromosome number (2n) invariably 2n = 50, but the ratio of uni- and bi-armed chromosomes was highly variable among their karyotypes, indicating extensive chromosomal rearrangements. Only one chromosome pair bearing 5S rDNA sites occurred in most species, except O. melanopleura, where two sites were detected. In contrast, only one chromosomal pair bearing 18S rDNA sites were observed among their karyotypes, but in different positions. These cytogenetic patterns indicated that the cytogenomic divergence patterns of these Osteochilus species were largely corresponding to the inferred phylogenetic tree. Similarly, different patterns of the distributions of rDNAs and microsatellites across genomes of examined species as well as their different karyotype structures indicated significant evolutionary differentiation of Osteochilus genomes.
Faculty of Interdisciplinary Studies Khon Kaen University Nong Khai Campus Nong Khai 43000 Thailand
KhonKaen University Faculty of Science Department of Biology Muang KhonKaen 40002 Thailand
Universidade Federal de São Carlos Departamento de Genética e Evolução São Carlos SP Brazil
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Bertollo LAC, Cioffi MB, Moreira-Filho O. Direct chromosome preparation from freshwater teleost fishes. In: Ozouf-Costaz C, Pisano E, Foresti F, Toledo LFA, editors. Fish cytogenetic techniques: Ray-fin fishes and chondrichthyans. 1. RC Press; Boca Raton: 2015. pp. 21–26.
Buth DG, Dowling TE, Gold JR. Molecular and cytological investigations. In: Nelson JS, Winfield IJ, editors. Cyprinid fishes: Systematics, biology and exploitation. Chapman and Hall; London: 1991. pp. 83–126.
Chaiyasan P, Supiwong W, Saenjundaeng P, Seetapan K, Pinmongkhonkul S, Tanomtong A. A Report on Classical Cytogenetics of Hihgfin Barb Fish, Cyclocheilichthys armatus (Cypriniformes, Cyprinidae) Cytologia. 2018;83:149–154.
Cioffi MB, Bertollo LAC. Chromosomal distribution and evolution of repetitive DNAs in fish. In: Garrido-Ramos MA, editor. Repetitive DNA. Karger Publishers; Basel: 2012. pp. 197–221. PubMed
Cioffi MB, Bertollo LAC, Villa MA, de Oliveira EA, Tanomtong A, Yano CF, Supiwong W, Chaveerach A. Genomic organization of repetitive DNA elements and its implications for the chromosomal evolution of channid fishes (Actinopterygii, Perciformes) PLoS One. 2015;10:e0130199. PubMed PMC
Cioffi MB, Martins C, Centofante L, Jacobina U, Bertollo LAC. Chromosomal variability among allopatric populations of Erythrinidae fish Hoplias malabaricus: Mapping of three classes of repetitive DNAs. Cytogenet Genome Res. 2009;125:132–141. PubMed
Collares-Pereira MJ, Ráb P. NOR polymorphism in the Iberian species Chondrostoma lusitanicum (Pisces: Cyprinidae) - re-examination by FISH. Genetica. 1999;105:301–303. PubMed
Conway KW. Osteology of the South Asian Genus Psilorhynchus McClelland, 1839 (Teleostei: Ostariophysi: Psilorhynchidae), with investigation of its phylogenetic relationships within the order Cypriniformes. Zool J Linnean Soc. 2011;163:50–154.
Foster HA, Bridger JM. The genome and the nucleus: A marriage made by evolution. Chromosoma. 2005;114:212–229. PubMed
Gornung E. Twenty years of physical mapping of major ribosomal RNA genes across the teleosts: A review of research. Cytogenet Genome Res. 2013;141:90–102. PubMed
Gromicho M, Coutanceau JP, Ozouf-Costaz C, Collares-Pereira MJ. Contrast between extensive variation of 28S rDNA and stability of 5S rDNA and telomeric repeats in the diploid-polyploid Squalius alburnoides complex and in its maternal ancestor Squalius pyrenaicus (Teleostei, Cyprinidae) Chromosome Res. 2006;14:297–306. PubMed
Hong Y, Zhou T. Studies on the karyotype and C-banding patterns in Acheilognathus gracilis with a discussion on the evolution of acheilognathid fishes. Acta Gen Sinica. 1985;12:143–148.
Karnasuta J. Systematic revision of Southeastern Asiatic cyprinid fish genus Osteochilus with a description of two new species and a new subspecies. J Fish Env. 1993;19:1–105.
Knytl M, Kalous L, Rylková K, Choleva L, Merilä J, Ráb P. Morphologically indistinguishable hybrid Carassius female with 156 chromosomes: A threat for the threatened crucian carp, C. carassius, L. PLoS One. 2018;13:e0190924. PubMed PMC
Kubat Z, Hobza R, Vyskot B, Kejnovsky E. Microsatellite accumulation on the Y chromosome in Silene latifolia. Genome. 2008;51:350–356. PubMed
Levan A, Fredga K, Sandberg AA. Nomenclature for centromeric position on chromosomes. Hereditas. 1964;52:201–220.
Lowry DB, Willis JH. A widespread chromosomal inversion polymorphism contributes to a major life-history transition, local adaptation, and reproductive isolation. PLoS Biol. 2010;8:e1000500. PubMed PMC
Magtoon W, Arai R. Karyotypes of three cyprinid fishes, Osteochilus hasselti, O. vittatus, and Labiobarbus lineatus, from Thailand. Jpn J Ichthyol. 1990;36:483–487.
Magtoon W, Arai R. Karyotypes and distribution of nucleolus organizer regions in cyprinid fishes from Thailand. Jpn J Ichthyol. 1993;40:77–85.
Martins C, Ferreira IA, Oliveira C, Foresti F, Galetti PM. A tandemly repetitive centromeric DNA sequence of the fish Hoplias malabaricus (Characiformes: Erythrinidae) is derived from 5S rDNA. Genetica. 2006;127:133–141. PubMed
Molina WF, Martinez PA, Bertollo LAC, Bidau CJ. Evidence for meiotic drive as an explanation for karyotype changes in fishes. Mar Genom. 2014;15:29–34. PubMed
Piscor D, Parise-Maltempi PP. Microsatellite organization in the B chromosome and A chromosome complement in Astyanax (Characiformes, Characidae) species. Cytogenet Genome Res. 2016;148:44–51. PubMed
Ráb P, Collares-Pereira MJ. Chromosomes of European cyprinid fishes (Cyprinidae, Cypriniformes) Folia Zool Brno. 1995;44:193–214.
Rebordinos L, Cross I, Merlo A. High evolutionary dynamism in 5S rDNA of fish: state of the art. Cytogenet Genome Res. 2013;141:103–113. PubMed
Saenjundaeng P, Kaewmad P, Supiwong W, Pinthong K, Pengseng P, Tanomtong A. Karyotype and characteristics of nucleolar organizer regions in longfin carp, Labiobarbus leptocheilus (Cypriniformes, Cyprinidae) Cytologia. 2018;83:265–269.
Salvadori S, Deiana AM, Coluccia E, Cannas R, Cau A, Milia A. Heterochromatin distribution and structure in Gymnothorax unicolor (Anguilliformes, Muraenidae) Ital J Zool. 1997;64:125–129.
Sember A, Bohlen J, Šlechtová V, Altmanova M, Symonová R, Rab P. Karyotype differentiation in 19 species of river loach fishes (Nemacheilidae, Teleostei): Extensive variability associated with rDNA and heterochromatin distribution and its phylogenetic and ecological interpretation. BMC Evol Biol. 2015;15:251. PubMed PMC
Sochorová J, Garcia S, Gálvez F, Symonová R, Kovařík A. Evolutionary trends in animal ribosomal DNA loci: Introduction to a new online database. Chromosoma. 2018;127:141–150. PubMed PMC
Sola L, Gornung E. Classical and molecular cytogenetics of the zebrafish, Danio rerio (Cyprinidae, Cypriniformes): An overview. Genetica. 2001;111:397–412. PubMed
Sola L, Rossi AR, Annesi F, Gornung E. Cytogenetic studies in Sparus auratus (Pisces, Perciformes): Molecular organization of 5S rDNA and chromosomal mapping of 5S and 45S ribosomal genes and of telomeric repeats. Hereditas. 2003;139:232–236. PubMed
Spoz A, Boron A, Porycka K, Karolewska M, Ito D, Abe S, Kirtiklis L, Juchno D. Molecular cytogenetic analysis of the crucian carp, Carassius carassius (Linnaeus, 1758) (Teleostei, Cyprinidae), using chromosome staining and fluorescence in situ hybridisation with rDNA probes. Comp Cytogenet. 2014;8:233–248. PubMed PMC
Stout CC, Tan M, Lemmon AR, Lemmon EM, Armbruster JW. Resolving Cypriniformes relationships using an anchored enrichment approach. BMC Evol Biol. 2016;16:1–13. PubMed PMC
Sumner AT. A simple technique for demonstrating centromeric heterochromatin. Exp Cell Res. 1972;75:304–306. PubMed
Symonová R, Howell WM. Vertebrate genome evolution in the light of fish cytogenomics and rDNAomics. Genes (Basel) 2018;9:96 PubMed PMC
Tan M, Armbruster JW. Phylogenetic classification of extant genera of fishes of the order Cypriniformes (Teleostei. Ostariophysi) Zootaxa. 2018;4476:6–39. PubMed
White MJD. Animal cytology and evolution. 3. Cambridge University Press: Cambridge; 1973. 468
Wolf U, Ritter H, Atkin NB, Ohno S. Polyploidization in the fish family Cyprinidae, order Cypriniformes. Humangenetik. 1969;7:240–244. PubMed
Yang L, Mayden RL. Phylogenetic relationships, subdivision, and biogeography of the cyprinid tribe Labeonini (sensu) (Teleostei: Cypriniformes), with comments on the implications of lips and associated structures in the labeonin classification. Mol Phylogenet Evol. 2010;54:254–265. PubMed
Yang L, Arunachalam M, Sado T, Levin BA, Golubtsov AS, Freyhof J, Friel JP, Chen WJ, Hirt MV, Manickam R, et al. Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes) Mol Phylogenet Evol. 2012;65:362–379. PubMed
Yang L, Sado T, Hirt MV, Pasco-Viel E, Arunachalam M, Li J, Wang X, Freyhof J, Saitoh K, Simons AM, et al. Phylogeny and polyploidy: Resolving the classification of cyprinine fishes (Teleostei: Cypriniformes) Mol Phylogenet Evol. 2015;85:97–116. PubMed
Yano CF, Bertollo LAC, Cioffi MB. Fish-FISH: Molecular cytogenetics in fish species. In: Liehr T, editor. Fluorescence In Situ Hybridization (FISH) Springer; Berlin: 2017. pp. 429–443.
Yu XY, Yu XJ. A schizothoracine fish species, Diptychus dipogon, with a very high number of chromosomes. Chromosome Inform Serv. 1990;48:17–18.
Eschmeyer’s Catalog of Fishes. [12 January 2020]. Eschmeyer’s Catalog of Fishes, http://researcharchive.calacademy.org/research/ichthyology/catalog/SpeciesByFamily.asp.