The genomic characteristics of human cytomegalovirus (HCMV) strains sequenced directly from clinical pathology samples were investigated, focusing on variation, multiple-strain infection, recombination, and gene loss. A total of 207 datasets generated in this and previous studies using target enrichment and high-throughput sequencing were analyzed, in the process enabling the determination of genome sequences for 91 strains. Key findings were that (i) it is important to monitor the quality of sequencing libraries in investigating variation; (ii) many recombinant strains have been transmitted during HCMV evolution, and some have apparently survived for thousands of years without further recombination; (iii) mutants with nonfunctional genes (pseudogenes) have been circulating and recombining for long periods and can cause congenital infection and resulting clinical sequelae; and (iv) intrahost variation in single-strain infections is much less than that in multiple-strain infections. Future population-based studies are likely to continue illuminating the evolution, epidemiology, and pathogenesis of HCMV.

• MeSH
• cytomegalovirové infekce virologie   MeSH
• Cytomegalovirus genetika   MeSH
• databáze nukleových kyselin MeSH
• datové soubory jako téma MeSH
• DNA virů genetika   MeSH
• genetická variace MeSH
• genom virový * genetika   MeSH
• genotyp MeSH
• lidé MeSH
• molekulární evoluce MeSH
• mutace MeSH
• rekombinace genetická * MeSH
• sekvence nukleotidů * MeSH
• sekvenční analýza DNA MeSH
• sekvenování celého genomu MeSH
• virové geny MeSH
• vysoce účinné nukleotidové sekvenování MeSH
• Check Tag
• lidé MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH