Crimean-Congo haemorrhagic fever orthonairovirus (CCHFV) is a negative-sense, single-stranded RNA virus with a segmented genome and the causative agent of a severe Crimean-Congo haemorrhagic fever (CCHF) disease. The virus is transmitted mainly by tick species in Hyalomma genus but other ticks such as representatives of genera Dermacentor and Rhipicephalus may also be involved in virus life cycle. To improve our understanding of CCHFV adaptation to its tick species, we compared nucleotide composition and codon usage patterns among the all CCHFV strains i) which sequences and other metadata as locality of collection and date of isolation are available in GenBank and ii) which were isolated from in-field collected tick species. These criteria fulfilled 70 sequences (24 coding for S, 23 for M, and 23 for L segment) of virus isolates originating from different representatives of Hyalomma and Rhipicephalus genera. Phylogenetic analyses confirmed that Hyalomma- and Rhipicephalus-originating CCHFV isolates belong to phylogenetically distinct CCHFV clades. Analyses of nucleotide composition among the Hyalomma- and Rhipicephalus-originating CCHFV isolates also showed significant differences, mainly in nucleotides located at the 3rd codon positions indicating changes in codon usage among these lineages. Analyses of codon adaptation index (CAI), effective number of codons (ENC), and other codon usage statistics revealed significant differences between Hyalomma- and Rhipicephalus-isolated CCHFV strains. Despite both sets of strains displayed a higher adaptation to use codons that are preferred by Hyalomma ticks than Rhipicephalus ticks, there were distinct codon usage preferences observed between the two tick species. These findings suggest that over the course of its long co-evolution with tick vectors, CCHFV has optimized its codon usage to efficiently utilize translational resources of Hyalomma species.

• MeSH
• fylogeneze * MeSH
• fyziologická adaptace genetika   MeSH
• hemoragická horečka krymská virologie   genetika   MeSH
• Ixodidae virologie   genetika   MeSH
• klíšťata virologie   genetika   MeSH
• virus krymsko-konžské hemoragické horečky * genetika   MeSH
• využití kodonu MeSH
• zvířata MeSH
• Check Tag
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• práce podpořená grantem MeSH

Crimean-Congo haemorrhagic fever virus (CCHFV) poses a significant public health threat due to its potential for causing severe disease in humans and its wide geographic distribution. The virus, primarily transmitted by Hyalomma ticks, is prevalent across Africa, Asia, Europe, and the Middle East. Understanding the virus's spread among tick populations is crucial for assessing its transmission dynamics. Vertebrates play a key role in CCHF epidemiology by supporting tick populations and acting as virus carriers during viremia. Livestock, such as cattle, sheep, and goats, amplify the virus and increase tick numbers, posing zoonotic risks. Wildlife, while asymptomatic, can serve as reservoirs. Birds generally do not show signs of the virus but can introduce infected ticks to new regions. This review compiles information on CCHFV's tick vectors and vertebrate hosts, emphasizing their roles in the virus's transmission dynamics. Understanding these dynamics is essential for developing effective control and prevention strategies.

• Klíčová slova
• Crimean-Congo haemorrhagic fever virus, livestock, ticks, wildlife, zoonotic disease,
• Publikační typ
• časopisecké články MeSH
• přehledy MeSH

Ticks, as vectors of several notorious zoonotic pathogens, represent an important and increasing threat for human and animal health in Europe. Recent applications of new technology revealed the complexity of the tick microbiome, which may affect its vectorial capacity. Appreciation of these complex systems is expanding our understanding of tick-borne pathogens, leading us to evolve a more integrated view that embraces the 'pathobiome'; the pathogenic agent integrated within its abiotic and biotic environments. In this review, we will explore how this new vision will revolutionize our understanding of tick-borne diseases. We will discuss the implications in terms of future research approaches that will enable us to efficiently prevent and control the threat posed by ticks.

• Klíčová slova
• Ixodes ricinus, co-infections, emerging diseases, new paradigm, next-generation sequencing, pathobiome, unknown pathogens, vector competence, zoonoses,
• MeSH
• klíšťata mikrobiologie   virologie   MeSH
• lidé MeSH
• mikrobiota * MeSH
• nemoci přenášené klíšťaty epidemiologie   mikrobiologie   přenos   virologie   MeSH
• zoonózy epidemiologie   mikrobiologie   přenos   virologie   MeSH
• zvířata MeSH
• Check Tag
• lidé MeSH
• zvířata MeSH
• Publikační typ
• časopisecké články MeSH
• přehledy MeSH
• Geografické názvy
• Evropa epidemiologie   MeSH