Eurasia has undergone substantial tectonic, geological, and climatic changes throughout the Cenozoic, primarily associated with tectonic plate collisions and a global cooling trend. The evolution of present-day biodiversity unfolded in this dynamic environment, characterised by intricate interactions of abiotic factors. However, comprehensive, large-scale reconstructions illustrating the extent of these influences are lacking. We reconstructed the evolutionary history of the freshwater fish family Nemacheilidae across Eurasia and spanning most of the Cenozoic on the base of 471 specimens representing 279 species and 37 genera plus outgroup samples. Molecular phylogeny using six genes uncovered six major clades within the family, along with numerous unresolved taxonomic issues. Dating of cladogenetic events and ancestral range estimation traced the origin of Nemacheilidae to Indochina around 48 mya. Subsequently, one branch of Nemacheilidae colonised eastern, central, and northern Asia, as well as Europe, while another branch expanded into the Burmese region, the Indian subcontinent, the Near East, and northeast Africa. These expansions were facilitated by tectonic connections, favourable climatic conditions, and orogenic processes. Conversely, aridification emerged as the primary cause of extinction events. Our study marks the first comprehensive reconstruction of the evolution of Eurasian freshwater biodiversity on a continental scale and across deep geological time.

Stone loaches, also known as Nemacheilidae, are a large family of fish commonly found in the streams and rivers of Europe and Asia, with a small number of species also inhabiting certain Ethiopian lakes. How these fish, which originated in Asia about 50 million years ago, made their way into European and African waters remains poorly understood. Major geological and climate changes took place throughout this period, from the formation of the Himalayas and other mountain ranges in eastern and western Asia to large drops in temperatures or rainfalls in certain regions. Šlechtová et al. studied the influence of these events on the spread and evolution of stone loaches. The team used a large dataset of 471 samples obtained from more than 250 species to reconstruct the evolutionary tree of the Nemacheilidae. The analysis uncovers six major groups (or clades) within the family, all stemming from a common ancestor living 48 million years ago in Indochina (current mainland Southeast Asia). Each clade has separate yet sometimes overlapping geographical distributions. They followed distinct routes to spread across Asia and Europe, which Šlechtová et al. were able to examine in the light of geological and climate changes. For instance, a major aridification event taking place in Central Asia between 34 to 23 million years ago created a geographical divide within an ancestral stone loach group, splitting it into two parts that evolved separately to form two of the six current clades. While the Himalayas also acted as a strong barrier, growing highlands in eastern and western Asia expanded the range of suitable habitats for the fish, allowing them to colonize central and northern Asia and, from there, Europe. Other major geological events played a strong role in the propagation of the Nemacheilidae. When a small tectonic plate known as West Burma Terrane first contacted Southeast Asia 33 million years ago and later northeast India around 30 million years ago, the ancestral fish family used the plate like a ferry boat to spread to these new territories, and from there, expand into the Near East, Southeast Europe and Northeast Africa. These findings build on prior work investigating how geological and climate events have shaped evolution. However, they are the first case study to show the complete evolution of an animal group over such a large area and long period. It is the first detailed example of its type and could be precious to inform future work on evolution.

• Keywords
• Cypriniformes, Nemacheilidae, Teleostei, ecology, evolutionary biology,
• MeSH
• Biodiversity MeSH
• Biological Evolution * MeSH
• Phylogeny * MeSH
• Fresh Water MeSH
• Animals MeSH
• Check Tag
• Animals MeSH
• Publication type
• Journal Article MeSH
• Geographicals
• Asia MeSH
• Europe MeSH

Large animal families with unresolved taxonomy are notoriously difficult to handle with respect to their biodiversity, systematics, and evolutionary history. We approach a large and taxonomically unresolved family of freshwater fishes (Nemacheilidae, >600 species) by proposing, on the basis of morphologic data, a species group within the family and study its phylogeny with conclusions regarding its diversity, taxonomy, and biogeographic history. Phylogenetic analyses of two mitochondrial and three nuclear genes of 139 specimens, representing about 46 species (17 candidate species from the proposed species-group, plus 29 comparative species), revealed that the proposed species group does not form a distinct monophyletic lineage, but that the candidate and comparative species mixed in three different lineages. However, the results revealed more than 20% of undescribed species within the ingroup and showed that species do not cluster according to the presently recognised genera. At least one of the genetic clades shows signs of an eastward range expansion during the second half of Miocene from north India via Myanmar into Laos, western China, and western Thailand. We conclude that the approach of picking monophyletic lineages to study biodiversity, systematics, and evolutionary history helps to open the door to large animal families.

• Keywords
• biodiversity, evolutionary history, freshwater fish, molecular marker, pigmentation pattern, systematics,
• Publication type
• Journal Article MeSH