Detail
Článek
Článek online
FT
Medvik - BMČ
  • Je něco špatně v tomto záznamu ?

Evaluation of DNA extraction methods for PCR-based detection of Listeria monocytogenes from vegetables

H. Vojkovska, I. Kubikova, P. Kralik,

. 2015 ; 60 (3) : 265-72. [pub] 20141229

Jazyk angličtina Země Anglie, Velká Británie

Typ dokumentu hodnotící studie, časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/bmc15031695

UNLABELLED: Epidemiological data indicate that raw vegetables are associated with outbreaks of Listeria monocytogenes. Therefore, there is a demand for the availability of rapid and sensitive methods, such as PCR assays, for the detection and accurate discrimination of L. monocytogenes. However, the efficiency of PCR methods can be negatively affected by inhibitory compounds commonly found in vegetable matrices that may cause false-negative results. Therefore, the sample processing and DNA isolation steps must be carefully evaluated prior to the introduction of such methods into routine practice. In this study, we compared the ability of three column-based and four magnetic bead-based commercial DNA isolation kits to extract DNA of the model micro-organism L. monocytogenes from raw vegetables. The DNA isolation efficiency of all isolation kits was determined using a triplex real-time qPCR assay designed to specifically detect L. monocytogenes. The kit with best performance, the PowerSoil(™) Microbial DNA Isolation Kit, is suitable for the extraction of amplifiable DNA from L. monocytogenes cells in vegetable with efficiencies ranging between 29.6 and 70.3%. Coupled with the triplex real-time qPCR assay, this DNA isolation kit is applicable to the samples with bacterial loads of 10(3) bacterial cells per gram of L. monocytogenes. SIGNIFICANCE AND IMPACT OF THE STUDY: Several recent outbreaks of Listeria monocytogenes have been associated with the consumption of fruits and vegetables. Real-time PCR assays allow fast detection and accurate quantification of microbes. However, the success of real-time PCR is dependent on the success with which template DNA can be extracted. The results of this study suggest that the PowerSoil(™) Microbial DNA Isolation Kit can be used for the extraction of amplifiable DNA from L. monocytogenes cells in vegetable with efficiencies ranging between 29.6 and 70.3%. This method is applicable to samples with bacterial loads of 10(3) bacterial cells per gram of L. monocytogenes.

Citace poskytuje Crossref.org

000      
00000naa a2200000 a 4500
001      
bmc15031695
003      
CZ-PrNML
005      
20170113091341.0
007      
ta
008      
151005s2015 enk f 000 0|eng||
009      
AR
024    7_
$a 10.1111/lam.12367 $2 doi
035    __
$a (PubMed)25431169
040    __
$a ABA008 $b cze $d ABA008 $e AACR2
041    0_
$a eng
044    __
$a enk
100    1_
$a Vojkovska, H $u Department of Food and Feed Safety, Veterinary Research Institute, Brno, Czech Republic.
245    10
$a Evaluation of DNA extraction methods for PCR-based detection of Listeria monocytogenes from vegetables / $c H. Vojkovska, I. Kubikova, P. Kralik,
520    9_
$a UNLABELLED: Epidemiological data indicate that raw vegetables are associated with outbreaks of Listeria monocytogenes. Therefore, there is a demand for the availability of rapid and sensitive methods, such as PCR assays, for the detection and accurate discrimination of L. monocytogenes. However, the efficiency of PCR methods can be negatively affected by inhibitory compounds commonly found in vegetable matrices that may cause false-negative results. Therefore, the sample processing and DNA isolation steps must be carefully evaluated prior to the introduction of such methods into routine practice. In this study, we compared the ability of three column-based and four magnetic bead-based commercial DNA isolation kits to extract DNA of the model micro-organism L. monocytogenes from raw vegetables. The DNA isolation efficiency of all isolation kits was determined using a triplex real-time qPCR assay designed to specifically detect L. monocytogenes. The kit with best performance, the PowerSoil(™) Microbial DNA Isolation Kit, is suitable for the extraction of amplifiable DNA from L. monocytogenes cells in vegetable with efficiencies ranging between 29.6 and 70.3%. Coupled with the triplex real-time qPCR assay, this DNA isolation kit is applicable to the samples with bacterial loads of 10(3) bacterial cells per gram of L. monocytogenes. SIGNIFICANCE AND IMPACT OF THE STUDY: Several recent outbreaks of Listeria monocytogenes have been associated with the consumption of fruits and vegetables. Real-time PCR assays allow fast detection and accurate quantification of microbes. However, the success of real-time PCR is dependent on the success with which template DNA can be extracted. The results of this study suggest that the PowerSoil(™) Microbial DNA Isolation Kit can be used for the extraction of amplifiable DNA from L. monocytogenes cells in vegetable with efficiencies ranging between 29.6 and 70.3%. This method is applicable to samples with bacterial loads of 10(3) bacterial cells per gram of L. monocytogenes.
650    _2
$a DNA bakterií $x genetika $x izolace a purifikace $7 D004269
650    _2
$a potravinářská mikrobiologie $x metody $7 D005516
650    _2
$a nemoci přenášené potravou $x prevence a kontrola $7 D005517
650    _2
$a lidé $7 D006801
650    _2
$a Listeria monocytogenes $x genetika $x izolace a purifikace $7 D008089
650    _2
$a listeriové infekce $x prevence a kontrola $7 D008088
650    _2
$a kvantitativní polymerázová řetězová reakce $7 D060888
650    _2
$a zelenina $x mikrobiologie $7 D014675
655    _2
$a hodnotící studie $7 D023362
655    _2
$a časopisecké články $7 D016428
655    _2
$a práce podpořená grantem $7 D013485
700    1_
$a Kubikova, I
700    1_
$a Králík, Petr $7 uzp2011673690
773    0_
$w MED00003137 $t Letters in applied microbiology $x 1472-765X $g Roč. 60, č. 3 (2015), s. 265-72
856    41
$u https://pubmed.ncbi.nlm.nih.gov/25431169 $y Pubmed
910    __
$a ABA008 $b sig $c sign $y a $z 0
990    __
$a 20151005 $b ABA008
991    __
$a 20170113091442 $b ABA008
999    __
$a ok $b bmc $g 1092571 $s 914821
BAS    __
$a 3
BAS    __
$a PreBMC
BMC    __
$a 2015 $b 60 $c 3 $d 265-72 $e 20141229 $i 1472-765X $m Letters in applied microbiology $n Lett Appl Microbiol $x MED00003137
LZP    __
$a Pubmed-20151005

Najít záznam

Citační ukazatele

Pouze přihlášení uživatelé

Možnosti archivace

Nahrávání dat ...