Two new families of tandem repeats isolated from genus Vicia using genomic self-priming PCR
Language English Country Germany Media print
Document type Comparative Study, Journal Article, Research Support, Non-U.S. Gov't
PubMed
10905342
DOI
10.1007/s004380000245
Knihovny.cz E-resources
- MeSH
- DNA Primers genetics MeSH
- DNA, Plant chemistry genetics isolation & purification MeSH
- Species Specificity MeSH
- Fabaceae genetics MeSH
- Genome, Plant MeSH
- In Situ Hybridization, Fluorescence MeSH
- Plants, Medicinal * MeSH
- Molecular Sequence Data MeSH
- Polymerase Chain Reaction methods MeSH
- Base Sequence MeSH
- Sequence Homology, Nucleic Acid MeSH
- Tandem Repeat Sequences * MeSH
- Base Composition MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Comparative Study MeSH
- Names of Substances
- DNA Primers MeSH
- DNA, Plant MeSH
A modified genomic self-priming technique was used for rapid isolation of tandem repeats from several Vicia species. Based on homologies of their nucleotide sequences the newly isolated clones were assigned to two repeat families named VicTR-A and VicTR-B. Both families are rich in AT (74%) and are organized as long blocks of tandemly repeated units. The VicTR-A repeats are characterized by a monomer size of 69 bp, whereas the VicTR-B repeat monomer is about 38 bp long, and the two families do not share significant sequence homology. VicTR sequences show different degrees of amplification (up to 10(6)-10(7) copies/haploid genome) in individual Vicia species and are not amplified in other legumes. The abundances of these repeats do not correlate with genome sizes but are similar in species that belong to the same taxonomic section within the genus Vicia. Primed in situ (PRINS) labeling of metaphase chromosomes of V. pannonica revealed that VicTR-A sequences are located predominantly in the telomeric regions of the short arms of all chromosomes. In contrast, labeling of VicTR-B repeats in V. sativa resulted in mainly intercalary bands of various intensities and only weak telomeric signals.
References provided by Crossref.org
Molecular analysis and genomic organization of major DNA satellites in banana (Musa spp.)
Survey of extrachromosomal circular DNA derived from plant satellite repeats
Karyotype analysis of four Vicia species using in situ hybridization with repetitive sequences
Microarray-based survey of repetitive genomic sequences in Vicia spp